mRNA_M-pyrifera_M_contig9057.21002.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9057.21002.1
Unique NamemRNA_M-pyrifera_M_contig9057.21002.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9057.21002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9057contigM-pyrifera_M_contig9057:6319..6828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size511
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.8467264-CDS-M-pyrifera_M_contig9057:6318..67501622816817.8467264-CDS-M-pyrifera_M_contig9057:6318..6750Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9057 6319..6750 +
1692278196.1476238-CDS-M-pyrifera_M_contig9057:6318..67501692278196.1476238-CDS-M-pyrifera_M_contig9057:6318..6750Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9057 6319..6750 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.8589528-UTR-M-pyrifera_M_contig9057:6750..68281622816817.8589528-UTR-M-pyrifera_M_contig9057:6750..6828Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9057 6751..6828 +
1692278196.1648228-UTR-M-pyrifera_M_contig9057:6750..68281692278196.1648228-UTR-M-pyrifera_M_contig9057:6750..6828Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9057 6751..6828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9057.21002.1prot_M-pyrifera_M_contig9057.21002.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9057 6319..6750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9057.21002.1

>prot_M-pyrifera_M_contig9057.21002.1 ID=prot_M-pyrifera_M_contig9057.21002.1|Name=mRNA_M-pyrifera_M_contig9057.21002.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
VSIKIKRSKYLRPECTRYLASFTGFPTSCLFLSQFLEEANKPHRVISVHN
RITGSKVSVRPSVRPSSPCHSLPPQKRRKCLITHDRLFRYALAWLTRTQY
TTPAYTLLPNAAPMLYGETKHAQIMRPNRLEKEKNNKQTKKRR*
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mRNA from alignment at M-pyrifera_M_contig9057:6319..6828+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9057.21002.1 ID=mRNA_M-pyrifera_M_contig9057.21002.1|Name=mRNA_M-pyrifera_M_contig9057.21002.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig9057:6319..6828+ (Macrocystis pyrifera P11B4 male)
GTTAGCATCAAGATTAAACGGTCTAAATATTTGCGTCCAGAGTGTACACG
CTATCTTGCGAGCTTCACCGGATTTCCCACGTCTTGTTTGTTTCTCTCTC
AATTTCTCGAAGAGGCGAATAAACCACATCGAGTTATATCAGTACACAAC
AGAATAACAGGGTCAAAGGTGTCCGTCCGTCCGTCCGTCCGTCCGTCCTC
TCCTTGCCACTCACTCCCGCCGCAAAAGCGACGCAAATGCCTCATCACCC
ACGACCGACTTTTTCGCTACGCGCTTGCATGGCTCACTCGGACGCAATAT
ACGACACCTGCATATACGCTCCTGCCAAATGCTGCCCCCATGCTCTATGG
AGAAACGAAACATGCACAAATCATGAGACCGAACAGATTGGAAAAGGAGA
AGAATAACAAACAAACAAAAAAAAGGAGATAAAAACGAGAAACAAAAATG
ACCAGCATGTGCTCTGACGATCCCGCACAATGCGGGGCTGGGTTTATTTT
TTTCACTTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9057:6319..6828+

>mRNA_M-pyrifera_M_contig9057.21002.1 ID=mRNA_M-pyrifera_M_contig9057.21002.1|Name=mRNA_M-pyrifera_M_contig9057.21002.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig9057:6319..6828+ (Macrocystis pyrifera P11B4 male)
GTTAGCATCAAGATTAAACGGTCTAAATATTTGCGTCCAGAGTGTACACG
CTATCTTGCGAGCTTCACCGGATTTCCCACGTCTTGTTTGTTTCTCTCTC
AATTTCTCGAAGAGGCGAATAAACCACATCGAGTTATATCAGTACACAAC
AGAATAACAGGGTCAAAGGTGTCCGTCCGTCCGTCCGTCCGTCCGTCCTC
TCCTTGCCACTCACTCCCGCCGCAAAAGCGACGCAAATGCCTCATCACCC
ACGACCGACTTTTTCGCTACGCGCTTGCATGGCTCACTCGGACGCAATAT
ACGACACCTGCATATACGCTCCTGCCAAATGCTGCCCCCATGCTCTATGG
AGAAACGAAACATGCACAAATCATGAGACCGAACAGATTGGAAAAGGAGA
AGAATAACAAACAAACAAAAAAAAGGAGATAAGTTAGCATCAAGATTAAA
CGGTCTAAATATTTGCGTCCAGAGTGTACACGCTATCTTGCGAGCTTCAC
CGGATTTCCCACGTCTTGTTTGTTTCTCTCTCAATTTCTCGAAGAGGCGA
ATAAACCACATCGAGTTATATCAGTACACAACAGAATAACAGGGTCAAAG
GTGTCCGTCCGTCCGTCCGTCCGTCCGTCCTCTCCTTGCCACTCACTCCC
GCCGCAAAAGCGACGCAAATGCCTCATCACCCACGACCGACTTTTTCGCT
ACGCGCTTGCATGGCTCACTCGGACGCAATATACGACACCTGCATATACG
CTCCTGCCAAATGCTGCCCCCATGCTCTATGGAGAAACGAAACATGCACA
AATCATGAGACCGAACAGATTGGAAAAGGAGAAGAATAACAAACAAACAA
AAAAAAGGAGATAA
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