mRNA_M-pyrifera_M_contig90533.20994.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90533.20994.1
Unique NamemRNA_M-pyrifera_M_contig90533.20994.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90533.20994.1 vs. uniprot
Match: A0A517PI49_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517PI49_9PLAN)

HSP 1 Score: 154 bits (390), Expect = 7.590e-46
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 QIRAGYIDLFYKNLDTLLIHPTVHVTMKVLPATPAQRIEVTGGQSNPFDFFSGIELAAIKFYSEEWIATARKP 219
            QIRAGYIDLFYKNLDTLLIHPTVHVTMKVLPATPAQRIEVTGGQSNPFDFFSGIELAAIKFYSEEWIATARKP
Sbjct:  155 QIRAGYIDLFYKNLDTLLIHPTVHVTMKVLPATPAQRIEVTGGQSNPFDFFSGIELAAIKFYSEEWIATARKP 227
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BLAST of mRNA_M-pyrifera_M_contig90533.20994.1 vs. uniprot
Match: A0A517W792_9PLAN (Uncharacterized protein n=2 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517W792_9PLAN)

HSP 1 Score: 148 bits (373), Expect = 2.840e-43
Identity = 70/73 (95.89%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    1 QIRAGYIDLFYKNLDTLLIHPTVHVTMKVLPATPAQRIEVTGGQSNPFDFFSGIELAAIKFYSEEWIATARKP 219
            +IRAGYIDL YKNLDTLLIHPT HVTMKVLPATPAQRIEVTGGQSNPFDFFSGIELAAIKFYSEEWIATARKP
Sbjct:  155 RIRAGYIDLLYKNLDTLLIHPTDHVTMKVLPATPAQRIEVTGGQSNPFDFFSGIELAAIKFYSEEWIATARKP 227
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BLAST of mRNA_M-pyrifera_M_contig90533.20994.1 vs. uniprot
Match: A0A518FPP8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FPP8_9PLAN)

HSP 1 Score: 127 bits (318), Expect = 5.790e-35
Identity = 57/73 (78.08%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:    1 QIRAGYIDLFYKNLDTLLIHPTVHVTMKVLPATPAQRIEVTGGQSNPFDFFSGIELAAIKFYSEEWIATARKP 219
            +IRAGYI+L YKNLD LLIHPT HVT+KVLPATPA RIEVT GQ NPFDFFSGIELA +K YSE+W+  ARKP
Sbjct:  155 RIRAGYINLLYKNLDALLIHPTDHVTLKVLPATPADRIEVTEGQPNPFDFFSGIELAVVKIYSEDWVVAARKP 227
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90533.20994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A517PI49_9PLAN7.590e-46100.00Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A517W792_9PLAN2.840e-4395.89Uncharacterized protein n=2 Tax=Gimesia chilikensi... [more]
A0A518FPP8_9PLAN5.790e-3578.08Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90533contigM-pyrifera_M_contig90533:3..224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.4541628-CDS-M-pyrifera_M_contig90533:2..2241622816817.4541628-CDS-M-pyrifera_M_contig90533:2..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90533 3..224 +
1692278195.9081073-CDS-M-pyrifera_M_contig90533:2..2241692278195.9081073-CDS-M-pyrifera_M_contig90533:2..224Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90533 3..224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90533.20994.1prot_M-pyrifera_M_contig90533.20994.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90533 3..224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90533.20994.1

>prot_M-pyrifera_M_contig90533.20994.1 ID=prot_M-pyrifera_M_contig90533.20994.1|Name=mRNA_M-pyrifera_M_contig90533.20994.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
QIRAGYIDLFYKNLDTLLIHPTVHVTMKVLPATPAQRIEVTGGQSNPFDF
FSGIELAAIKFYSEEWIATARKP*
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mRNA from alignment at M-pyrifera_M_contig90533:3..224+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90533.20994.1 ID=mRNA_M-pyrifera_M_contig90533.20994.1|Name=mRNA_M-pyrifera_M_contig90533.20994.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig90533:3..224+ (Macrocystis pyrifera P11B4 male)
CAGATTCGTGCGGGTTACATCGACCTGTTTTATAAAAACCTGGATACCCT
GCTGATTCATCCCACAGTTCACGTCACGATGAAAGTGCTGCCAGCAACGC
CTGCACAGCGGATCGAGGTTACCGGAGGGCAGTCAAATCCGTTTGATTTC
TTCAGTGGGATCGAACTGGCTGCGATCAAATTCTATTCAGAGGAATGGAT
AGCCACAGCGAGGAAACCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90533:3..224+

>mRNA_M-pyrifera_M_contig90533.20994.1 ID=mRNA_M-pyrifera_M_contig90533.20994.1|Name=mRNA_M-pyrifera_M_contig90533.20994.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig90533:3..224+ (Macrocystis pyrifera P11B4 male)
CAGATTCGTGCGGGTTACATCGACCTGTTTTATAAAAACCTGGATACCCT
GCTGATTCATCCCACAGTTCACGTCACGATGAAAGTGCTGCCAGCAACGC
CTGCACAGCGGATCGAGGTTACCGGAGGGCAGTCAAATCCGTTTGATTTC
TTCAGTGGGATCGAACTGGCTGCGATCAAATTCTATTCAGAGGAATGGAT
AGCCACAGCGAGGAAACCATAACAGATTCGTGCGGGTTACATCGACCTGT
TTTATAAAAACCTGGATACCCTGCTGATTCATCCCACAGTTCACGTCACG
ATGAAAGTGCTGCCAGCAACGCCTGCACAGCGGATCGAGGTTACCGGAGG
GCAGTCAAATCCGTTTGATTTCTTCAGTGGGATCGAACTGGCTGCGATCA
AATTCTATTCAGAGGAATGGATAGCCACAGCGAGGAAACCATAA
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