mRNA_M-pyrifera_M_contig9053.20992.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9053.20992.1
Unique NamemRNA_M-pyrifera_M_contig9053.20992.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9053.20992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9053contigM-pyrifera_M_contig9053:7164..7978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size815
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9053.20992.1prot_M-pyrifera_M_contig9053.20992.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9053 7198..7668 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.29047-UTR-M-pyrifera_M_contig9053:7163..71971622816817.29047-UTR-M-pyrifera_M_contig9053:7163..7197Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9053 7164..7197 +
1692278195.7936497-UTR-M-pyrifera_M_contig9053:7163..71971692278195.7936497-UTR-M-pyrifera_M_contig9053:7163..7197Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9053 7164..7197 +
1622816817.316379-UTR-M-pyrifera_M_contig9053:7668..79781622816817.316379-UTR-M-pyrifera_M_contig9053:7668..7978Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9053 7669..7978 +
1692278195.8238912-UTR-M-pyrifera_M_contig9053:7668..79781692278195.8238912-UTR-M-pyrifera_M_contig9053:7668..7978Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9053 7669..7978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816817.303392-CDS-M-pyrifera_M_contig9053:7197..76681622816817.303392-CDS-M-pyrifera_M_contig9053:7197..7668Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9053 7198..7668 +
1692278195.809011-CDS-M-pyrifera_M_contig9053:7197..76681692278195.809011-CDS-M-pyrifera_M_contig9053:7197..7668Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9053 7198..7668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9053.20992.1

>prot_M-pyrifera_M_contig9053.20992.1 ID=prot_M-pyrifera_M_contig9053.20992.1|Name=mRNA_M-pyrifera_M_contig9053.20992.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
MLDLAWLGLTCPRRQALEGSRHDGLLGTWGGDSERFKDVTSRHATLTMLI
GDLLSLGTRLVEAIGRAVDQSNASFGMYLAYHCLTCHTGALTQQAAWTLR
AFAHAGRDYLFSFTPPSLWAFGRALFLLIFEGWVTSPSQTSYNLPGTPTG
IMLQQR*
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mRNA from alignment at M-pyrifera_M_contig9053:7164..7978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9053.20992.1 ID=mRNA_M-pyrifera_M_contig9053.20992.1|Name=mRNA_M-pyrifera_M_contig9053.20992.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=815bp|location=Sequence derived from alignment at M-pyrifera_M_contig9053:7164..7978+ (Macrocystis pyrifera P11B4 male)
TCCTCCCTCCATCCCGCCGTCAACCGTAGGCAGCATGCTTGATTTGGCTT
GGCTTGGCTTGACCTGCCCACGGCGTCAAGCATTGGAGGGTTCCAGGCAT
GATGGCTTGTTGGGTACGTGGGGTGGAGACTCGGAACGGTTTAAGGACGT
GACAAGCCGTCATGCCACCTTAACGATGTTGATCGGTGATCTCTTGAGCC
TCGGCACGAGGTTGGTAGAGGCCATCGGCCGTGCAGTTGACCAATCCAAT
GCTTCCTTTGGTATGTACTTGGCTTACCATTGTCTTACTTGTCATACTGG
CGCTTTGACGCAGCAGGCGGCATGGACTTTAAGAGCTTTTGCTCACGCAG
GGCGCGATTATTTGTTTTCGTTCACTCCTCCCTCATTATGGGCGTTTGGG
CGTGCGCTTTTTTTGTTGATTTTTGAAGGATGGGTCACAAGCCCGTCCCA
AACAAGTTATAACCTACCTGGTACACCGACTGGTATAATGCTACAGCAGC
GGTAAAATGGGTTTTCAACCACCATGGATGGAGGCGGAATCCCCTCATGT
CGGGGTTGACTGGTTTGATTTATTTGTTGCAACAGGCGCCCGAAATGCTG
CACCCGCAGTATGCCCTTTGCCGAGATAGAATCGGATGCAACAGCCTGCT
TTGCTTTGTCTCGTGCAGCTTAAAAACGTGAACGATACCGTGTCGTACGC
CATCACCCAGTAGTTTCATGGACTCGAACCTGAATGAAACCAGGCCATAA
TCCTTGATCAGTTACTCGCGGTAATTTTTGTGAATTTTGAAGCATGGGTC
AAACCCATTCCAAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9053:7164..7978+

>mRNA_M-pyrifera_M_contig9053.20992.1 ID=mRNA_M-pyrifera_M_contig9053.20992.1|Name=mRNA_M-pyrifera_M_contig9053.20992.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig9053:7164..7978+ (Macrocystis pyrifera P11B4 male)
ATGCTTGATTTGGCTTGGCTTGGCTTGACCTGCCCACGGCGTCAAGCATT
GGAGGGTTCCAGGCATGATGGCTTGTTGGGTACGTGGGGTGGAGACTCGG
AACGGTTTAAGGACGTGACAAGCCGTCATGCCACCTTAACGATGTTGATC
GGTGATCTCTTGAGCCTCGGCACGAGGTTGGTAGAGGCCATCGGCCGTGC
AGTTGACCAATCCAATGCTTCCTTTGGTATGTACTTGGCTTACCATTGTC
TTACTTGTCATACTGGCGCTTTGACGCAGCAGGCGGCATGGACTTTAAGA
GCTTTTGCTCACGCAGGGCGCGATTATTTGTTTTCGTTCACTCCTCCCTC
ATTATGGGCGTTTGGGCGTGCGCTTTTTTTGTTGATTTTTGAAGGATGGG
TCACAAGCCCGTCCCAAACAAGTTATAACCTACCTGGTACACCGACTGGT
ATAATGCTACAGCAGCGGTAAATGCTTGATTTGGCTTGGCTTGGCTTGAC
CTGCCCACGGCGTCAAGCATTGGAGGGTTCCAGGCATGATGGCTTGTTGG
GTACGTGGGGTGGAGACTCGGAACGGTTTAAGGACGTGACAAGCCGTCAT
GCCACCTTAACGATGTTGATCGGTGATCTCTTGAGCCTCGGCACGAGGTT
GGTAGAGGCCATCGGCCGTGCAGTTGACCAATCCAATGCTTCCTTTGGTA
TGTACTTGGCTTACCATTGTCTTACTTGTCATACTGGCGCTTTGACGCAG
CAGGCGGCATGGACTTTAAGAGCTTTTGCTCACGCAGGGCGCGATTATTT
GTTTTCGTTCACTCCTCCCTCATTATGGGCGTTTGGGCGTGCGCTTTTTT
TGTTGATTTTTGAAGGATGGGTCACAAGCCCGTCCCAAACAAGTTATAAC
CTACCTGGTACACCGACTGGTATAATGCTACAGCAGCGGTAA
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