mRNA_M-pyrifera_M_contig90506.20983.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90506.20983.1
Unique NamemRNA_M-pyrifera_M_contig90506.20983.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90506.20983.1 vs. uniprot
Match: A0A7V9U5T3_9BACT (PKD domain-containing protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7V9U5T3_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 5.870e-12
Identity = 96/185 (51.89%), Postives = 121/185 (65.41%), Query Frame = 1 
Query:   85 TVTLQFSLSGLELNY------YSHNGRVIAYGGGGDDLLI--SEFLGDVEFDGGDGDDILIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGISTFTDNPGQEDLTPLYALRDEWTSTRTYEERVANIFDGSGAATRANGDYFLAPGATLFIDEDADILSGDDDLDWFI 615
            T+T+  S   +++N       Y+  G++   GG G+D L   S    DV  +GG GDD    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AG +++  N        L A+  EWTS RTY ERV+N+ +G+G+ATR NG+YF++P  T F D+  D LSG    DW++
Sbjct:  556 TITITRSGGNIDVNIGGQTTTYTVLGQIYVLGGDGNDALAVGSAVQNDVLLNGGAGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVAGTTSYDSN-----AIALNAIMAEWTSGRTYAERVSNVRNGTGSATRDNGNYFISPDVTAFDDDATDTLSGGGGRDWYV 735
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BLAST of mRNA_M-pyrifera_M_contig90506.20983.1 vs. uniprot
Match: A0A353BDK9_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A353BDK9_9PLAN)

HSP 1 Score: 68.6 bits (166), Expect = 1.130e-10
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:  394 FTDNPGQEDLTPLYALRDEWTSTRTYEERVANIFDGSGAATRANGDYFLAPGATLFIDEDADILSGDDDLDWF 612
            FTD+   ++   L A+RDEWTS R+ ++RV NI++GSG+A R NG YFL  G T+  D D D+L G   +DW+
Sbjct:  145 FTDHDDNDEA--LNAIRDEWTSDRSLQKRVRNIWNGSGSANRENGQYFLN-GQTISNDGDLDLLFGGFGIDWY 214
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BLAST of mRNA_M-pyrifera_M_contig90506.20983.1 vs. uniprot
Match: A0A7C5ZH01_9BACT (Calcium-binding protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C5ZH01_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 1.260e-10
Identity = 38/79 (48.10%), Postives = 47/79 (59.49%), Query Frame = 1 
Query:  385 ISTFTDNPGQEDLTPLYALRDEWTSTRTYEERVANIFDGSGAATRANGDYFL---APGATLFIDEDADILSGDDDLDWF 612
            I+ +T +    D   L A+  EWTSTRTY +RVANI DGSG A+RANG+ F     P  T+F D   D+L G    DWF
Sbjct:  145 IAGYTSHDADRDA--LLAIMAEWTSTRTYSQRVANIRDGSGTASRANGNAFFNPDGPSRTVFDDAATDLLFGGAGNDWF 221
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BLAST of mRNA_M-pyrifera_M_contig90506.20983.1 vs. uniprot
Match: UPI0019C0C932 (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019C0C932)

HSP 1 Score: 64.7 bits (156), Expect = 5.840e-9
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:  430 LYALRDEWTSTRTYEERVANIFDGSGAATRANGDYFLAPGATLFIDEDADILSGDDDLDWFI 615
            L A+ DEW S+RTY +RV N+ +GSG A+R NG  FL+  AT F D   D+L+G++  DW++
Sbjct:  192 LLAIMDEWNSSRTYSQRVNNLRNGSGTASRQNGSVFLSD-ATTFDDGVEDVLTGENGFDWYL 252
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BLAST of mRNA_M-pyrifera_M_contig90506.20983.1 vs. uniprot
Match: A0A7C3TLU6_9BACT (PKD domain-containing protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C3TLU6_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 3.550e-6
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:  418 DLTPLYALRDEWTSTRTYEERVANIFDGSGAATRANGDYFL------APGATLFIDEDADILSGDDDLDWF 612
            ++  L A+  EWTS R+Y +RVANI  G+G+  R NGDYFL      + G T+F D   D+L+G+  +D+F
Sbjct:  571 NIAALEAILAEWTSPRSYAQRVANI-RGTGSGERLNGDYFLDAEGASSGGRTVFDDGARDVLTGNQGIDFF 640
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BLAST of mRNA_M-pyrifera_M_contig90506.20983.1 vs. uniprot
Match: A0A517YA75_9BACT (Bifunctional hemolysin/adenylate cyclase n=2 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YA75_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 4.240e-6
Identity = 34/65 (52.31%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:  430 LYALRDEWTSTRTYEERVANIFDGSGAATRANGDYFLA--PGATLFIDED-ADILSGDDDLDWFI 615
            L+A+ +EW+STRTY  RVAN+  G+G  TR NG  FLA  P  T+F D   AD L G    DWFI
Sbjct: 4214 LFAILNEWSSTRTYPARVANL-RGTGTGTRVNGSTFLANSPADTIFGDSSTADRLVGGAGRDWFI 4277
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BLAST of mRNA_M-pyrifera_M_contig90506.20983.1 vs. uniprot
Match: A0A1P8WM76_9PLAN (Hemolysin, chromosomal n=2 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WM76_9PLAN)

HSP 1 Score: 56.2 bits (134), Expect = 1.030e-5
Identity = 26/67 (38.81%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  415 EDLTPLYALRDEWTSTRTYEERVANIFDGSGAATRANGDYFLAPGATLFI--DEDADILSGDDDLDW 609
            +D   L  L+ EWTS R+ ++R+AN+++GSG+  R N D FL  G    +  D++ D+L G   +DW
Sbjct: 2962 QDSAALRKLQAEWTSERSVQQRIANLYNGSGSTNRLNEDNFLTVGTEGSVQDDDERDLLFGGGSMDW 3028
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90506.20983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7V9U5T3_9BACT5.870e-1251.89PKD domain-containing protein n=1 Tax=Gemmatimonad... [more]
A0A353BDK9_9PLAN1.130e-1047.95Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A7C5ZH01_9BACT1.260e-1048.10Calcium-binding protein n=1 Tax=Phycisphaerae bact... [more]
UPI0019C0C9325.840e-948.39Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
A0A7C3TLU6_9BACT3.550e-643.66PKD domain-containing protein n=1 Tax=Phycisphaera... [more]
A0A517YA75_9BACT4.240e-652.31Bifunctional hemolysin/adenylate cyclase n=2 Tax=A... [more]
A0A1P8WM76_9PLAN1.030e-538.81Hemolysin, chromosomal n=2 Tax=Fuerstiella marisge... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90506contigM-pyrifera_M_contig90506:73..714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size615
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.9675379-CDS-M-pyrifera_M_contig90506:72..3321622816816.9675379-CDS-M-pyrifera_M_contig90506:72..332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90506 73..332 -
1692278195.6192162-CDS-M-pyrifera_M_contig90506:72..3321692278195.6192162-CDS-M-pyrifera_M_contig90506:72..332Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90506 73..332 -
1622816816.9810638-CDS-M-pyrifera_M_contig90506:359..7141622816816.9810638-CDS-M-pyrifera_M_contig90506:359..714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90506 360..714 -
1692278195.629991-CDS-M-pyrifera_M_contig90506:359..7141692278195.629991-CDS-M-pyrifera_M_contig90506:359..714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90506 360..714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90506.20983.1prot_M-pyrifera_M_contig90506.20983.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90506 73..714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90506.20983.1

>prot_M-pyrifera_M_contig90506.20983.1 ID=prot_M-pyrifera_M_contig90506.20983.1|Name=mRNA_M-pyrifera_M_contig90506.20983.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=205bp
DTLPGVTNLVYGGSDSADILGIFGVPAFTVTLQFSLSGLELNYYSHNGRV
IAYGGGGDDLLISEFLGDVEFDGGDGDDILIGGNGNDILRGGAGADILLG
RLGADLLLGGAGRDLLFGGAGEDLLVAGISTFTDNPGQEDLTPLYALRDE
WTSTRTYEERVANIFDGSGAATRANGDYFLAPGATLFIDEDADILSGDDD
LDWFI
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mRNA from alignment at M-pyrifera_M_contig90506:73..714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90506.20983.1 ID=mRNA_M-pyrifera_M_contig90506.20983.1|Name=mRNA_M-pyrifera_M_contig90506.20983.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig90506:73..714- (Macrocystis pyrifera P11B4 male)
GATACCTTGCCGGGCGTTACCAATCTGGTTTACGGCGGTAGCGACTCGGC
CGATATCCTCGGCATCTTTGGCGTGCCGGCATTCACCGTCACGCTGCAGT
TCTCACTTTCAGGGCTCGAGCTCAATTATTACTCCCACAACGGCCGAGTC
ATCGCCTACGGAGGCGGTGGGGACGACTTGCTCATCTCCGAGTTCCTCGG
AGACGTCGAATTCGACGGTGGTGATGGCGACGATATCTTGATCGGCGGTA
ATGGCAACGACATTCTTCGCGGCGGTGCCGGGGCCGATATTCTTCTCGGC
CGCCTCGGGGCCGACCTGCTGCTAGGTGGGGCAGGGCGAGACCTGCTGTT
TGGCGGTGCGGGAGTCGACGAACTCGGGGGAGGGGCAGGCGAGGACCTGC
TGGTCGCCGGTATCTCAACCTTTACCGATAACCCAGGTCAAGAAGACTTG
ACCCCGCTGTATGCCCTGCGAGACGAATGGACCTCCACGCGGACCTACGA
AGAGCGGGTGGCCAACATCTTCGACGGCTCGGGCGCTGCCACGCGTGCCA
ACGGAGACTACTTCCTCGCACCCGGCGCAACCCTCTTCATCGACGAAGAT
GCCGATATCCTCTCGGGAGACGATGACCTCGATTGGTTCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90506:73..714-

>mRNA_M-pyrifera_M_contig90506.20983.1 ID=mRNA_M-pyrifera_M_contig90506.20983.1|Name=mRNA_M-pyrifera_M_contig90506.20983.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1230bp|location=Sequence derived from alignment at M-pyrifera_M_contig90506:73..714- (Macrocystis pyrifera P11B4 male)
GATACCTTGCCGGGCGTTACCAATCTGGTTTACGGCGGTAGCGACTCGGC
CGATATCCTCGGCATCTTTGGCGTGCCGGCATTCACCGTCACGCTGCAGT
TCTCACTTTCAGGGCTCGAGCTCAATTATTACTCCCACAACGGCCGAGTC
ATCGCCTACGGAGGCGGTGGGGACGACTTGCTCATCTCCGAGTTCCTCGG
AGACGTCGAATTCGACGGTGGTGATGGCGACGATATCTTGATCGGCGGTA
ATGGCAACGACATTCTTCGCGGCGGTGCCGGGGCCGATATTCTTCTCGGC
CGCCTCGGGGCCGACCTGCTGCTAGGTGGGGCAGGGCGAGACCTGCTGTT
TGGCGGATACCTTGCCGGGCGTTACCAATCTGGTTTACGGCGGTAGCGAC
TCGGCCGATATCCTCGGCATCTTTGGCGTGCCGGCATTCACCGTCACGCT
GCAGTTCTCACTTTCAGGGCTCGAGCTCAATTATTACTCCCACAACGGCC
GAGTCATCGCCTACGGAGGCGGTGGGGACGACTTGCTCATCTCCGAGTTC
CTCGGAGACGTCGAATTCGACGGTGGTGATGGCGACGATATCTTGATCGG
CGGTAATGGCAACGACATTCTTCGCGGCGGTGCCGGGGCCGATATTCTTC
TCGGCCGCCTCGGGGCCGACCTGCTGCTAGGTGGGGCAGGGCGAGACCTG
CTGTTTGGCGGGGCAGGCGAGGACCTGCTGGTCGCCGGTATCTCAACCTT
TACCGATAACCCAGGTCAAGAAGACTTGACCCCGCTGTATGCCCTGCGAG
ACGAATGGACCTCCACGCGGACCTACGAAGAGCGGGTGGCCAACATCTTC
GACGGCTCGGGCGCTGCCACGCGTGCCAACGGAGACTACTTCCTCGCACC
CGGCGCAACCCTCTTCATCGACGAAGATGCCGATATCCTCTCGGGAGACG
ATGACCTCGATTGGTTCATCGGGCAGGCGAGGACCTGCTGGTCGCCGGTA
TCTCAACCTTTACCGATAACCCAGGTCAAGAAGACTTGACCCCGCTGTAT
GCCCTGCGAGACGAATGGACCTCCACGCGGACCTACGAAGAGCGGGTGGC
CAACATCTTCGACGGCTCGGGCGCTGCCACGCGTGCCAACGGAGACTACT
TCCTCGCACCCGGCGCAACCCTCTTCATCGACGAAGATGCCGATATCCTC
TCGGGAGACGATGACCTCGATTGGTTCATC
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