mRNA_M-pyrifera_M_contig90495.20981.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90495.20981.1
Unique NamemRNA_M-pyrifera_M_contig90495.20981.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90495.20981.1 vs. uniprot
Match: A0A7S4NTT7_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NTT7_9EUKA)

HSP 1 Score: 80.1 bits (196), Expect = 2.590e-13
Identity = 69/216 (31.94%), Postives = 108/216 (50.00%), Query Frame = 1 
Query:    1 LARQEKLFSLNKQFNSEADELEAWAAEKEAYLAAAEEVSTLDDARLKIMHLDVFDEDMNASLSRVENIKGQRDEIVGLNYHKSDDVNARVAAIEALWEKLSGLAKGKRETLDA--ARSAQQDKEGLRLDYASKADKYVAFAKNSVDNLDDHFGTTLEDVEAHKAKMDADSEALKSSSTEQKAAAVXXXXXXXXAGVEDNRHTTTTASDLDASEQAL 642
            L RQE LF+L  +FN++AD +E+W  EK+AYL   EEV+T+  AR+ +  LD +D++ +A  +++  +K    EI G NY  S  V  R+AA+E     L   +  KR  L+A   R  Q+ KE     +  KA  ++AF +    +++   G   E  E   +      EA  S +  Q               + +N HTT + +DL A+ +AL
Sbjct:  828 LKRQENLFNLVNRFNADADRIESWQQEKDAYLQTDEEVNTIIVARVLVKALDSYDKEYDAFQAKMAALKELCGEITGDNYVDSQTVQDRLAALEGTNAGLVDKSAEKRNRLNAHLERFEQKCKE-----FGEKAQAHLAFLEKIRADINALEGEPQELTEKINSTYQDGQEAKDSLAAMQ----ALDDELVLQMNITENEHTTASMADLKAANRAL 1034
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BLAST of mRNA_M-pyrifera_M_contig90495.20981.1 vs. uniprot
Match: A0A0D8XXU2_DICVI (Uncharacterized protein n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8XXU2_DICVI)

HSP 1 Score: 59.3 bits (142), Expect = 2.240e-6
Identity = 72/266 (27.07%), Postives = 121/266 (45.49%), Query Frame = 1 
Query:    1 LARQEKLFSLNKQFNSEADELEAWAAEKEAYLAAAEEVST-LDDARLKIMHLDVFDEDMNASLSRVENIKGQRDEIVGLNYHKSDDVNARVAAIEALWEKLSGLAKGKRETLDAARSAQQDKEGLRLDYASKADKYVAFAKNSVDNLDD----HFGTTLEDV-EAH---KAKM-DADSEALKSSSTEQKAAAVXXXXXXXXAGVEDNRHTTTTASDLDASEQALNDALSKRDAAYEEELKRQQANDEERKKFAEMANGFVSFLDEQ 768
            + R E+L  L ++F  +    E W+  KE  L + +  S  L   +      + F+ D+ A   RVE I     E+  L Y     +NAR  +I + W++L  LA  +R  L  A    +  +   LD+A +A  +  +   + ++L D    H  + +E++  AH   K+ + DAD E +  S  EQ+   +          +  N +T   AS +      +  A+ +RDA  + EL+RQQ N+  R  FAE AN    +L+ +
Sbjct:  410 IMRLERLEHLAEKFRRKCTLHEEWSLGKEEALRSQDWKSCGLYKIKALRKRHEAFESDLGAHQDRVEQIALIARELNNLRYQDIAPINARCQSICSQWDRLGQLATQRRSALQEAERVAELLDAFYLDFAKRAAPFNNWLDGAREDLADFVIVHEMSEIEELCSAHDKFKSTLGDADKEFVSISGIEQEIERLVETHGFDRELLR-NPYTDLVASVIRRKWSEVQQAVPRRDAQLQTELRRQQNNERLRTVFAEKANQIGPWLERE 674
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90495.20981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4NTT7_9EUKA2.590e-1331.94Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A0D8XXU2_DICVI2.240e-627.07Uncharacterized protein n=1 Tax=Dictyocaulus vivip... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90495contigM-pyrifera_M_contig90495:7..786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue1.6e-23
Seed eggNOG ortholog529818.AMSG_02268T0
Preferred nameMICALL2
KEGG koko:K03038,ko:K05699,ko:K10382,ko:K13978,ko:K18620,ko:K19948,ko:K21068
KEGG Pathwayko03050,ko04510,ko04520,ko04530,ko04670,ko04810,ko05146,ko05169,ko05203,ko05322,map03050,map04510,map04520,map04530,map04670,map04810,map05146,map05169,map05203,map05322
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005886,GO:0005911,GO:0005923,GO:0006810,GO:0006996,GO:0007010,GO:0007015,GO:0007043,GO:0007155,GO:0007275,GO:0007399,GO:0008092,GO:0008150,GO:0008154,GO:0009653,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016197,GO:0022008,GO:0022607,GO:0022610,GO:0030029,GO:0030030,GO:0030036,GO:0030041,GO:0030054,GO:0030154,GO:0030182,GO:0031005,GO:0031175,GO:0031410,GO:0031532,GO:0031589,GO:0031982,GO:0032456,GO:0032501,GO:0032502,GO:0032989,GO:0034329,GO:0034330,GO:0034446,GO:0034622,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043296,GO:0043297,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045216,GO:0046907,GO:0048468,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0051015,GO:0051179,GO:0051234,GO:0051258,GO:0051641,GO:0051649,GO:0055037,GO:0065003,GO:0070160,GO:0070830,GO:0071840,GO:0071944,GO:0097435,GO:0097458,GO:0097708,GO:0120025,GO:0120036
EggNOG free text desc.actin binding
EggNOG OGsCOG5069@1,KOG0035@2759,KOG0517@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051,ko04131,ko04147,ko04812
Exons1
Model size780
Cds size780
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.8821084-CDS-M-pyrifera_M_contig90495:6..7861622816816.8821084-CDS-M-pyrifera_M_contig90495:6..786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90495 7..786 -
1692278195.5774083-CDS-M-pyrifera_M_contig90495:6..7861692278195.5774083-CDS-M-pyrifera_M_contig90495:6..786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90495 7..786 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90495.20981.1prot_M-pyrifera_M_contig90495.20981.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90495 7..786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90495.20981.1

>prot_M-pyrifera_M_contig90495.20981.1 ID=prot_M-pyrifera_M_contig90495.20981.1|Name=mRNA_M-pyrifera_M_contig90495.20981.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=260bp
LARQEKLFSLNKQFNSEADELEAWAAEKEAYLAAAEEVSTLDDARLKIMH
LDVFDEDMNASLSRVENIKGQRDEIVGLNYHKSDDVNARVAAIEALWEKL
SGLAKGKRETLDAARSAQQDKEGLRLDYASKADKYVAFAKNSVDNLDDHF
GTTLEDVEAHKAKMDADSEALKSSSTEQKAAAVAAAEALKAAGVEDNRHT
TTTASDLDASEQALNDALSKRDAAYEEELKRQQANDEERKKFAEMANGFV
SFLDEQGTAM
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mRNA from alignment at M-pyrifera_M_contig90495:7..786-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90495.20981.1 ID=mRNA_M-pyrifera_M_contig90495.20981.1|Name=mRNA_M-pyrifera_M_contig90495.20981.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig90495:7..786- (Macrocystis pyrifera P11B4 male)
CTCGCTCGCCAGGAGAAGCTCTTCTCCCTCAACAAGCAGTTCAACTCCGA
GGCCGACGAGCTTGAGGCTTGGGCCGCCGAGAAGGAGGCTTACCTCGCTG
CGGCAGAGGAGGTCAGCACTCTGGACGACGCTCGCCTGAAGATCATGCAC
CTCGACGTCTTCGACGAGGACATGAACGCCAGCCTCTCTCGCGTGGAGAA
CATCAAGGGCCAGCGCGACGAGATTGTTGGACTTAACTACCACAAGTCCG
ACGATGTCAACGCTCGCGTTGCAGCGATCGAGGCTCTCTGGGAGAAGCTC
AGCGGCCTTGCCAAGGGCAAGCGCGAGACTCTCGACGCTGCCCGCAGCGC
CCAGCAGGACAAGGAGGGTCTTCGCCTCGACTACGCCTCGAAGGCAGACA
AGTACGTCGCCTTTGCCAAGAACAGCGTGGACAACCTTGACGACCACTTC
GGCACCACGCTGGAGGACGTTGAGGCCCACAAGGCCAAGATGGACGCCGA
CTCTGAGGCTCTCAAGAGCAGCAGCACCGAGCAGAAGGCTGCCGCCGTGG
CCGCCGCCGAGGCCCTGAAGGCTGCTGGTGTGGAGGACAACCGCCACACC
ACCACCACCGCGAGCGACCTCGACGCCAGCGAGCAGGCTCTGAATGACGC
CCTCTCCAAGCGCGACGCCGCCTACGAGGAGGAGTTGAAGCGCCAGCAGG
CCAACGACGAAGAGCGCAAGAAGTTTGCCGAGATGGCCAACGGATTCGTG
AGCTTCTTGGACGAGCAGGGCACCGCCATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90495:7..786-

>mRNA_M-pyrifera_M_contig90495.20981.1 ID=mRNA_M-pyrifera_M_contig90495.20981.1|Name=mRNA_M-pyrifera_M_contig90495.20981.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1560bp|location=Sequence derived from alignment at M-pyrifera_M_contig90495:7..786- (Macrocystis pyrifera P11B4 male)
CTCGCTCGCCAGGAGAAGCTCTTCTCCCTCAACAAGCAGTTCAACTCCGA
GGCCGACGAGCTTGAGGCTTGGGCCGCCGAGAAGGAGGCTTACCTCGCTG
CGGCAGAGGAGGTCAGCACTCTGGACGACGCTCGCCTGAAGATCATGCAC
CTCGACGTCTTCGACGAGGACATGAACGCCAGCCTCTCTCGCGTGGAGAA
CATCAAGGGCCAGCGCGACGAGATTGTTGGACTTAACTACCACAAGTCCG
ACGATGTCAACGCTCGCGTTGCAGCGATCGAGGCTCTCTGGGAGAAGCTC
AGCGGCCTTGCCAAGGGCAAGCGCGAGACTCTCGACGCTGCCCGCAGCGC
CCAGCAGGACAAGGAGGGTCTTCGCCTCGACTACGCCTCGAAGGCAGACA
AGTACGTCGCCTTTGCCAAGAACAGCGTGGACAACCTTGACGACCACTTC
GGCACCACGCTGGAGGACGTTGAGGCCCACAAGGCCAAGATGGACGCCGA
CTCTGAGGCTCTCAAGAGCAGCAGCACCGAGCAGAAGGCTGCCGCCGTGG
CCGCCGCCGAGGCCCTGAAGGCTGCTGGTGTGGAGGACAACCGCCACACC
ACCACCACCGCGAGCGACCTCGACGCCAGCGAGCAGGCTCTGAATGACGC
CCTCTCCAAGCGCGACGCCGCCTACGAGGAGGAGTTGAAGCGCCAGCAGG
CCAACGACGAAGAGCGCAAGAAGTTTGCCGAGATGGCCAACGGATTCGTG
AGCTTCTTGGACGAGCAGGGCACCGCCATGCTCGCTCGCCAGGAGAAGCT
CTTCTCCCTCAACAAGCAGTTCAACTCCGAGGCCGACGAGCTTGAGGCTT
GGGCCGCCGAGAAGGAGGCTTACCTCGCTGCGGCAGAGGAGGTCAGCACT
CTGGACGACGCTCGCCTGAAGATCATGCACCTCGACGTCTTCGACGAGGA
CATGAACGCCAGCCTCTCTCGCGTGGAGAACATCAAGGGCCAGCGCGACG
AGATTGTTGGACTTAACTACCACAAGTCCGACGATGTCAACGCTCGCGTT
GCAGCGATCGAGGCTCTCTGGGAGAAGCTCAGCGGCCTTGCCAAGGGCAA
GCGCGAGACTCTCGACGCTGCCCGCAGCGCCCAGCAGGACAAGGAGGGTC
TTCGCCTCGACTACGCCTCGAAGGCAGACAAGTACGTCGCCTTTGCCAAG
AACAGCGTGGACAACCTTGACGACCACTTCGGCACCACGCTGGAGGACGT
TGAGGCCCACAAGGCCAAGATGGACGCCGACTCTGAGGCTCTCAAGAGCA
GCAGCACCGAGCAGAAGGCTGCCGCCGTGGCCGCCGCCGAGGCCCTGAAG
GCTGCTGGTGTGGAGGACAACCGCCACACCACCACCACCGCGAGCGACCT
CGACGCCAGCGAGCAGGCTCTGAATGACGCCCTCTCCAAGCGCGACGCCG
CCTACGAGGAGGAGTTGAAGCGCCAGCAGGCCAACGACGAAGAGCGCAAG
AAGTTTGCCGAGATGGCCAACGGATTCGTGAGCTTCTTGGACGAGCAGGG
CACCGCCATG
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