mRNA_M-pyrifera_M_contig9048.20979.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9048.20979.1
Unique NamemRNA_M-pyrifera_M_contig9048.20979.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9048.20979.1 vs. uniprot
Match: D7FQ07_ECTSI (Dolichol-phosphate mannosyltransferase subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ07_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.450e-23
Identity = 49/52 (94.23%), Postives = 52/52 (100.00%), Query Frame = 2
Query:    2 FQMEVIVRAKLKGYSVGEVPISFVDRIYGESKLGSGEIVAYLIGLVNLFLTT 157
            FQMEVIVRA+LKGYSVGEVPI+FVDRIYGESKLGSGEIV+YLIGLVNLFLTT
Sbjct:  230 FQMEVIVRARLKGYSVGEVPITFVDRIYGESKLGSGEIVSYLIGLVNLFLTT 281          
BLAST of mRNA_M-pyrifera_M_contig9048.20979.1 vs. uniprot
Match: A0A662WZ85_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WZ85_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.490e-19
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 2
Query:    2 FQMEVIVRAKLKGYSVGEVPISFVDRIYGESKLGSGEIVAYLIGLVNLFLTT 157
            FQME++VRA+ + Y++ EVPI+FVDRIYGESKLG+GEIVAYL GL+NLF TT
Sbjct:    1 FQMEILVRARQRHYAIAEVPITFVDRIYGESKLGAGEIVAYLQGLLNLFFTT 52          
BLAST of mRNA_M-pyrifera_M_contig9048.20979.1 vs. uniprot
Match: A0A2D4CIK6_PYTIN (Dolichol-phosphate mannosyltransferase subunit 1 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CIK6_PYTIN)

HSP 1 Score: 87.8 bits (216), Expect = 4.990e-19
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 2
Query:    2 FQMEVIVRAKLKGYSVGEVPISFVDRIYGESKLGSGEIVAYLIGLVNLFLTT 157
            FQME++VRA+LK YS+ EVPI+FVDRIYGESKLG+GEIVAYL GL  LFLTT
Sbjct:  188 FQMEILVRARLKNYSIAEVPITFVDRIYGESKLGAGEIVAYLKGLAQLFLTT 239          
BLAST of mRNA_M-pyrifera_M_contig9048.20979.1 vs. uniprot
Match: M4B7I2_HYAAE (Dolichol-phosphate mannosyltransferase subunit 1 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B7I2_HYAAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.140e-18
Identity = 40/52 (76.92%), Postives = 48/52 (92.31%), Query Frame = 2
Query:    2 FQMEVIVRAKLKGYSVGEVPISFVDRIYGESKLGSGEIVAYLIGLVNLFLTT 157
            FQME++VRA+ + YS+ EVPI+FVDRIYGESKLG+GEIVAYL GL+NLFLTT
Sbjct:  160 FQMEILVRARQRQYSIAEVPITFVDRIYGESKLGAGEIVAYLRGLLNLFLTT 211          
BLAST of mRNA_M-pyrifera_M_contig9048.20979.1 vs. uniprot
Match: A0A7S0PNS2_9CHLO (Dolichol-phosphate mannosyltransferase subunit 1 n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PNS2_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 6.710e-18
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 2
Query:    2 FQMEVIVRAKLKGYSVGEVPISFVDRIYGESKLGSGEIVAYLIGLVNLFLT 154
            FQME+IVRAK  G+SVGEVPISFVDR+YGESKLG+ EIVAYL GL+ LF T
Sbjct:  201 FQMEIIVRAKAMGFSVGEVPISFVDRVYGESKLGAAEIVAYLKGLIRLFFT 251          
BLAST of mRNA_M-pyrifera_M_contig9048.20979.1 vs. uniprot
Match: W2JPX9_PHYPR (Dolichol-phosphate mannosyltransferase subunit 1 n=9 Tax=Peronosporaceae TaxID=4777 RepID=W2JPX9_PHYPR)

HSP 1 Score: 84.3 bits (207), Expect = 1.080e-17
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 2
Query:    2 FQMEVIVRAKLKGYSVGEVPISFVDRIYGESKLGSGEIVAYLIGLVNLFLTT 157
            FQME++VRA+ + YS+ EVPI+FVDRIYGESKLG+GEIVAYL GL+NLF TT
Sbjct:  189 FQMEILVRARQRQYSIDEVPITFVDRIYGESKLGAGEIVAYLKGLLNLFFTT 240          
BLAST of mRNA_M-pyrifera_M_contig9048.20979.1 vs. uniprot
Match: A0A5D6XFF6_9STRA (Dolichol-phosphate mannosyltransferase subunit 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFF6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.930e-17
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 2
Query:    2 FQMEVIVRAKLKGYSVGEVPISFVDRIYGESKLGSGEIVAYLIGLVNLFLTT 157
            FQME++VRA+ + Y++ EVPI+FVDRIYGESKLG+GEIVAYL GL+NLF TT
Sbjct:  188 FQMEILVRARERRYTIAEVPITFVDRIYGESKLGAGEIVAYLKGLLNLFFTT 239          
BLAST of mRNA_M-pyrifera_M_contig9048.20979.1 vs. uniprot
Match: H3G934_PHYRM (Dolichol-phosphate mannosyltransferase subunit 1 n=16 Tax=Oomycota TaxID=4762 RepID=H3G934_PHYRM)

HSP 1 Score: 83.2 bits (204), Expect = 2.980e-17
Identity = 38/52 (73.08%), Postives = 47/52 (90.38%), Query Frame = 2
Query:    2 FQMEVIVRAKLKGYSVGEVPISFVDRIYGESKLGSGEIVAYLIGLVNLFLTT 157
            FQME++VRA+ + +S+ EVPI+FVDRIYGESKLG+GEIVAYL GL+NLF TT
Sbjct:  189 FQMEILVRARQRQFSIAEVPITFVDRIYGESKLGAGEIVAYLKGLLNLFFTT 240          
BLAST of mRNA_M-pyrifera_M_contig9048.20979.1 vs. uniprot
Match: A0A7L3ZF62_FREGA (DPM1 mannosyltransferase (Fragment) n=1 Tax=Fregetta grallaria TaxID=79628 RepID=A0A7L3ZF62_FREGA)

HSP 1 Score: 80.1 bits (196), Expect = 4.660e-17
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 FQMEVIVRAKLKGYSVGEVPISFVDRIYGESKLGSGEIVAYLIGLVNLFLTT 157
            FQME+IVRA+  GY++GEVPISFVDR+YGESKLG  EIV++L GL+ LF TT
Sbjct:   81 FQMEMIVRARQLGYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 132          
BLAST of mRNA_M-pyrifera_M_contig9048.20979.1 vs. uniprot
Match: A0A8C4SFH1_ERPCA (Dolichol-phosphate mannosyltransferase subunit 1 n=4 Tax=Polypteridae TaxID=8289 RepID=A0A8C4SFH1_ERPCA)

HSP 1 Score: 82.8 bits (203), Expect = 4.770e-17
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 2
Query:    2 FQMEVIVRAKLKGYSVGEVPISFVDRIYGESKLGSGEIVAYLIGLVNLFLTT 157
            FQME+IVRAK  GYSVGEVPISFVDR+YGESKLG  EIV++L GL+ LF TT
Sbjct:  197 FQMEMIVRAKQLGYSVGEVPISFVDRVYGESKLGGNEIVSFLKGLMTLFATT 248          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9048.20979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ07_ECTSI1.450e-2394.23Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
A0A662WZ85_9STRA2.490e-1973.08Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A2D4CIK6_PYTIN4.990e-1978.85Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
M4B7I2_HYAAE1.140e-1876.92Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
A0A7S0PNS2_9CHLO6.710e-1878.43Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
W2JPX9_PHYPR1.080e-1775.00Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
A0A5D6XFF6_9STRA2.930e-1773.08Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
H3G934_PHYRM2.980e-1773.08Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
A0A7L3ZF62_FREGA4.660e-1771.15DPM1 mannosyltransferase (Fragment) n=1 Tax=Freget... [more]
A0A8C4SFH1_ERPCA4.770e-1776.92Dolichol-phosphate mannosyltransferase subunit 1 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9048contigM-pyrifera_M_contig9048:8401..8726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.8010368-CDS-M-pyrifera_M_contig9048:8400..87241622816816.8010368-CDS-M-pyrifera_M_contig9048:8400..8724Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9048 8401..8724 +
1692278195.5383108-CDS-M-pyrifera_M_contig9048:8400..87241692278195.5383108-CDS-M-pyrifera_M_contig9048:8400..8724Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9048 8401..8724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9048.20979.1prot_M-pyrifera_M_contig9048.20979.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9048 8401..8724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9048.20979.1

>prot_M-pyrifera_M_contig9048.20979.1 ID=prot_M-pyrifera_M_contig9048.20979.1|Name=mRNA_M-pyrifera_M_contig9048.20979.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
FPDGGDSAGEAEGLQRRGGADLVCRPNLRRIEARIRGDRGVLDRTRKSLP
HDLSFRLSVVERAVSKLDVWYHVCRRSLSRVVKVVVRYGGACALFLRVFI
LKRSDLDV
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mRNA from alignment at M-pyrifera_M_contig9048:8401..8726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9048.20979.1 ID=mRNA_M-pyrifera_M_contig9048.20979.1|Name=mRNA_M-pyrifera_M_contig9048.20979.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=326bp|location=Sequence derived from alignment at M-pyrifera_M_contig9048:8401..8726+ (Macrocystis pyrifera P11B4 male)
TTTCCAGATGGAGGTGATAGTGCGGGCGAAGCTGAAGGGCTACAGCGTAG GGGAGGTGCCGATCTCGTTTGTCGACCGAATCTACGGAGAATCGAAGCTC GGATCAGGGGAGATCGTGGCGTACTTGATCGGACTCGTAAATCTCTTCCT CACGACTTGAGCTTCCGTTTGTCCGTCGTTGAAAGGGCGGTTTCTAAGTT AGATGTTTGGTATCATGTGTGCCGGCGTTCTTTGAGTAGAGTAGTAAAAG TGGTTGTGCGTTACGGTGGCGCTTGTGCCCTTTTCCTCCGTGTTTTTATC TTGAAGCGGAGCGATCTCGATGTCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9048:8401..8726+

>mRNA_M-pyrifera_M_contig9048.20979.1 ID=mRNA_M-pyrifera_M_contig9048.20979.1|Name=mRNA_M-pyrifera_M_contig9048.20979.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig9048:8401..8726+ (Macrocystis pyrifera P11B4 male)
TTTCCAGATGGAGGTGATAGTGCGGGCGAAGCTGAAGGGCTACAGCGTAG
GGGAGGTGCCGATCTCGTTTGTCGACCGAATCTACGGAGAATCGAAGCTC
GGATCAGGGGAGATCGTGGCGTACTTGATCGGACTCGTAAATCTCTTCCT
CACGACTTGAGCTTCCGTTTGTCCGTCGTTGAAAGGGCGGTTTCTAAGTT
AGATGTTTGGTATCATGTGTGCCGGCGTTCTTTGAGTAGAGTAGTAAAAG
TGGTTGTGCGTTACGGTGGCGCTTGTGCCCTTTTCCTCCGTGTTTTTATC
TTGAAGCGGAGCGATCTCGATGTCTTTCCAGATGGAGGTGATAGTGCGGG
CGAAGCTGAAGGGCTACAGCGTAGGGGAGGTGCCGATCTCGTTTGTCGAC
CGAATCTACGGAGAATCGAAGCTCGGATCAGGGGAGATCGTGGCGTACTT
GATCGGACTCGTAAATCTCTTCCTCACGACTTGAGCTTCCGTTTGTCCGT
CGTTGAAAGGGCGGTTTCTAAGTTAGATGTTTGGTATCATGTGTGCCGGC
GTTCTTTGAGTAGAGTAGTAAAAGTGGTTGTGCGTTACGGTGGCGCTTGT
GCCCTTTTCCTCCGTGTTTTTATCTTGAAGCGGAGCGATCTCGATGTC
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