mRNA_M-pyrifera_M_contig90446.20976.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90446.20976.1
Unique NamemRNA_M-pyrifera_M_contig90446.20976.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90446.20976.1 vs. uniprot
Match: A0A7Y5S7L1_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Y5S7L1_9BACT)

HSP 1 Score: 125 bits (315), Expect = 8.320e-33
Identity = 59/101 (58.42%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    4 NFFSGGQMPSDSLLLYFQTRSLRIQHHWRLDGIHYAKTCDAWLAKLDRNYAKARQVLQEA-GETNVTKALSNWRLFFIACGETFRYNHGRDWAVSHYLFEK 303
            +FF+GG MPSD LLLYFQ   LR+  HWR+DG HY +T DAWLA LDRN A+A  +L    G  N  + L  WR FFIAC E + YN+GR+W VSHYLFE+
Sbjct:  246 HFFTGGIMPSDHLLLYFQDH-LRLLDHWRVDGTHYGRTSDAWLANLDRNRARALPILVATYGRENAIRWLHRWRTFFIACAELWNYNNGREWIVSHYLFER 345          
BLAST of mRNA_M-pyrifera_M_contig90446.20976.1 vs. uniprot
Match: A0A3C1WFX7_9BACT (SAM-dependent methyltransferase (Fragment) n=1 Tax=Fibrobacteres bacterium TaxID=2052160 RepID=A0A3C1WFX7_9BACT)

HSP 1 Score: 115 bits (289), Expect = 8.230e-31
Identity = 55/100 (55.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    7 FFSGGQMPSDSLLLYFQTRSLRIQHHWRLDGIHYAKTCDAWLAKLDRNYAKARQVLQEA-GETNVTKALSNWRLFFIACGETFRYNHGRDWAVSHYLFEK 303
            FF+GG MPSD LLLYFQ   L I  HWR++GIHY KT  AWL  LDRN A A ++  E  G     K  + WR+FF+AC E ++Y  G +W VSHYLFEK
Sbjct:   54 FFTGGNMPSDDLLLYFQD-DLAILEHWRVNGIHYGKTARAWLDNLDRNRASALRICAETYGPLQAAKWFNYWRIFFMACEELWKYAEGEEWLVSHYLFEK 152          
BLAST of mRNA_M-pyrifera_M_contig90446.20976.1 vs. uniprot
Match: A0A5A8EE65_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EE65_CAFRO)

HSP 1 Score: 121 bits (303), Expect = 1.160e-30
Identity = 57/104 (54.81%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 ENFFSGGQMPSDSLLLYFQTRSLRIQHHWRLDGIHYAKTCDAWLAKLDRNYAKARQVLQEAGETNVTKALSNWRLFFIACGETFRYNHGRDWAVSHYLFEKDKE 312
            E FF+GGQMPS+ L  YFQ R LR++  W L+G+HY KTCDAWL KLD N   A ++   A   N TK   +WRLFFI CGE+F Y  G +W VSHYLFE+ ++
Sbjct:  275 ERFFTGGQMPSNDLFAYFQ-RDLRLRDQWVLNGMHYKKTCDAWLDKLDSNKDAALRLF--ADSPNPTKEFVDWRLFFIVCGESFAYADGEEWQVSHYLFERPED 375          
BLAST of mRNA_M-pyrifera_M_contig90446.20976.1 vs. uniprot
Match: A0A0L0D8N9_THETB (Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D8N9_THETB)

HSP 1 Score: 119 bits (299), Expect = 1.730e-30
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    7 FFSGGQMPSDSLLLYFQTRSLRIQHHWRLDGIHYAKTCDAWLAKLDRNYAKARQVLQEAGETNVTKALSNWRLFFIACGETFRYNHGRDWAVSHYLFEKDK 309
            FF+GG MPSD LLLYFQ  ++ I  HWR+DG HYA TC+ WL  +D N A+ R++  +      TK  + WR+F++AC E F YN+G++W VSHYLF   K
Sbjct:  241 FFTGGTMPSDDLLLYFQD-AMAITQHWRVDGRHYAHTCEDWLRNMDNNAAEVREIFAQCYGDEATKFFNYWRVFYLACAELFAYNNGQEWFVSHYLFTNKK 340          
BLAST of mRNA_M-pyrifera_M_contig90446.20976.1 vs. uniprot
Match: A7RFL5_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RFL5_NEMVE)

HSP 1 Score: 117 bits (294), Expect = 1.060e-29
Identity = 51/102 (50.00%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 ENFFSGGQMPSDSLLLYFQTRSLRIQHHWRLDGIHYAKTCDAWLAKLDRNYAKARQVLQEA-GETNVTKALSNWRLFFIACGETFRYNHGRDWAVSHYLFEK 303
            +NFF+GG MPS  L  YFQ + L ++ HW ++G HY+KT +AWL ++  N  K ++V   + G  NVT+ + NWR+FFI C ETF +N+G DW VSHYLF+K
Sbjct:  243 KNFFTGGTMPSSDLFFYFQ-KDLFVKDHWHVNGKHYSKTLEAWLGRMYENLDKVKEVFSASYGSNNVTQQVFNWRMFFIYCSETFGFNNGNDWLVSHYLFKK 343          
BLAST of mRNA_M-pyrifera_M_contig90446.20976.1 vs. uniprot
Match: UPI001AF168FA (cyclopropane-fatty-acyl-phospholipid synthase family protein n=1 Tax=Luteitalea sp. TBR-22 TaxID=2802971 RepID=UPI001AF168FA)

HSP 1 Score: 116 bits (291), Expect = 2.690e-29
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    7 FFSGGQMPSDSLLLYFQTRSLRIQHHWRLDGIHYAKTCDAWLAKLDRNYAKARQVLQEA-GETNVTKALSNWRLFFIACGETFRYNHGRDWAVSHYLFEK 303
            FF+GGQMPSD L LYFQ   +RI  HWR++G HYA+TC+AWLA++D    + RQ+  +  G    T+  + WR+FF+AC E F Y  G +W VSHY F K
Sbjct:  245 FFTGGQMPSDDLFLYFQD-DMRIDAHWRVNGTHYARTCEAWLARMDAAAPRVRQIFADTYGAGEATRWWARWRIFFMACAELFAYRGGNEWMVSHYRFSK 343          
BLAST of mRNA_M-pyrifera_M_contig90446.20976.1 vs. uniprot
Match: A0A6I7PLB7_9BACT (Class I SAM-dependent methyltransferase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6I7PLB7_9BACT)

HSP 1 Score: 115 bits (289), Expect = 5.840e-29
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    4 NFFSGGQMPSDSLLLYFQTRSLRIQHHWRLDGIHYAKTCDAWLAKLDRNYAKARQVLQEAGETNVTKALSNWRLFFIACGETFRYNHGRDWAVSHYLFEK 303
            +FF+GG MPSD LLLYFQ   +R++ HWR+ G+HY KT +AWL  LD N A+A   L+EA   +    L  WR+FFIAC E +  ++G +W VSHYLFEK
Sbjct:  251 HFFTGGTMPSDDLLLYFQDH-VRLREHWRVCGVHYEKTANAWLTNLDANRAEALAALREAYGDDAPAWLQRWRVFFIACAELWGLHNGTEWIVSHYLFEK 349          
BLAST of mRNA_M-pyrifera_M_contig90446.20976.1 vs. uniprot
Match: A0A7W1JZU0_9ACTN (Class I SAM-dependent methyltransferase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1JZU0_9ACTN)

HSP 1 Score: 114 bits (285), Expect = 1.780e-28
Identity = 53/100 (53.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    7 FFSGGQMPSDSLLLYFQTRSLRIQHHWRLDGIHYAKTCDAWLAKLDRNYAKARQVLQEA-GETNVTKALSNWRLFFIACGETFRYNHGRDWAVSHYLFEK 303
            FFSGG MPSD LLL+FQ R L +  HWR+ GIHYA+T +AWL ++D+N     +VL E  G        SNWR+FF+AC E + + +G +W VSHYLFEK
Sbjct:  235 FFSGGTMPSDDLLLHFQ-RDLVLNDHWRVSGIHYARTAEAWLERMDQNEVAVLRVLAEQYGADRAAAWWSNWRVFFLACSELWGFRNGSEWLVSHYLFEK 333          
BLAST of mRNA_M-pyrifera_M_contig90446.20976.1 vs. uniprot
Match: A0A3N5KQU9_9GAMM (Class I SAM-dependent methyltransferase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5KQU9_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 1.800e-28
Identity = 54/100 (54.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    7 FFSGGQMPSDSLLLYFQTRSLRIQHHWRLDGIHYAKTCDAWLAKLDRNYAKARQVLQEA-GETNVTKALSNWRLFFIACGETFRYNHGRDWAVSHYLFEK 303
            FF+GG MPSD LLLYFQ R LR   HW++DG HY KT +AWLA +DR   +   VL+   G  +V +    WR+FF++C E F Y  GR+W VSHYLFEK
Sbjct:  247 FFTGGIMPSDDLLLYFQ-RDLRAAEHWQVDGTHYQKTAEAWLANMDRERERVMPVLEATYGAHDVRRWWVYWRVFFMSCAELFGYRDGREWIVSHYLFEK 345          
BLAST of mRNA_M-pyrifera_M_contig90446.20976.1 vs. uniprot
Match: A0A835YH28_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH28_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.830e-28
Identity = 55/100 (55.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    7 FFSGGQMPSDSLLLYFQTRSLRIQHHWRLDGIHYAKTCDAWLAKLDRNYAKARQVLQEA-GETNVTKALSNWRLFFIACGETFRYNHGRDWAVSHYLFEK 303
            FF+GG MPSD LLLYFQ   LRI+ HWR++G HYA+T +AWL ++D N A    +L +  G  + TK    WRLFFIAC E F Y +G+ W VSHYLF K
Sbjct:  259 FFTGGTMPSDDLLLYFQD-DLRIEGHWRVNGTHYARTSEAWLRQMDDNKAALLPLLADIYGAGSETKWFVYWRLFFIACAELFNYENGQQWMVSHYLFNK 357          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90446.20976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y5S7L1_9BACT8.320e-3358.42Class I SAM-dependent methyltransferase n=1 Tax=Ph... [more]
A0A3C1WFX7_9BACT8.230e-3155.00SAM-dependent methyltransferase (Fragment) n=1 Tax... [more]
A0A5A8EE65_CAFRO1.160e-3054.81Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A0L0D8N9_THETB1.730e-3050.50Cyclopropane-fatty-acyl-phospholipid synthase n=1 ... [more]
A7RFL5_NEMVE1.060e-2950.00Predicted protein n=1 Tax=Nematostella vectensis T... [more]
UPI001AF168FA2.690e-2951.00cyclopropane-fatty-acyl-phospholipid synthase fami... [more]
A0A6I7PLB7_9BACT5.840e-2953.00Class I SAM-dependent methyltransferase n=1 Tax=Ph... [more]
A0A7W1JZU0_9ACTN1.780e-2853.00Class I SAM-dependent methyltransferase n=1 Tax=Ac... [more]
A0A3N5KQU9_9GAMM1.800e-2854.00Class I SAM-dependent methyltransferase n=1 Tax=Xa... [more]
A0A835YH28_9STRA1.830e-2855.00S-adenosyl-L-methionine-dependent methyltransferas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90446contigM-pyrifera_M_contig90446:477..791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue4.3e-22
Seed eggNOG ortholog529818.AMSG_00524T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mycolic acid cyclopropane synthetase
EggNOG OGs2QQW3@2759,COG2230@1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size315
Cds size291
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.6798594-CDS-M-pyrifera_M_contig90446:476..7671622816816.6798594-CDS-M-pyrifera_M_contig90446:476..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90446 477..767 -
1692278195.490542-CDS-M-pyrifera_M_contig90446:476..7671692278195.490542-CDS-M-pyrifera_M_contig90446:476..767Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90446 477..767 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.6945233-UTR-M-pyrifera_M_contig90446:767..7911622816816.6945233-UTR-M-pyrifera_M_contig90446:767..791Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90446 768..791 -
1692278195.5034773-UTR-M-pyrifera_M_contig90446:767..7911692278195.5034773-UTR-M-pyrifera_M_contig90446:767..791Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90446 768..791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90446.20976.1prot_M-pyrifera_M_contig90446.20976.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90446 477..767 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90446.20976.1

>prot_M-pyrifera_M_contig90446.20976.1 ID=prot_M-pyrifera_M_contig90446.20976.1|Name=mRNA_M-pyrifera_M_contig90446.20976.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MPSDSLLLYFQTRSLRIQHHWRLDGIHYAKTCDAWLAKLDRNYAKARQVL
QEAGETNVTKALSNWRLFFIACGETFRYNHGRDWAVSHYLFEKDKE*
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mRNA from alignment at M-pyrifera_M_contig90446:477..791-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90446.20976.1 ID=mRNA_M-pyrifera_M_contig90446.20976.1|Name=mRNA_M-pyrifera_M_contig90446.20976.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig90446:477..791- (Macrocystis pyrifera P11B4 male)
GAGAACTTTTTCAGCGGAGGACAAATGCCTTCCGATTCTCTACTCCTCTA CTTTCAAACGCGTTCCTTGCGCATCCAACACCACTGGAGGCTTGATGGCA TTCACTACGCTAAAACTTGTGATGCCTGGCTTGCAAAACTCGACAGAAAC TACGCCAAAGCACGCCAAGTGCTGCAAGAAGCTGGAGAAACAAATGTCAC CAAAGCGCTCTCCAACTGGAGGCTTTTCTTCATCGCATGTGGAGAAACCT TTCGCTACAATCATGGCAGAGACTGGGCTGTCTCCCACTATCTTTTTGAA AAAGATAAGGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90446:477..791-

>mRNA_M-pyrifera_M_contig90446.20976.1 ID=mRNA_M-pyrifera_M_contig90446.20976.1|Name=mRNA_M-pyrifera_M_contig90446.20976.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig90446:477..791- (Macrocystis pyrifera P11B4 male)
ATGCCTTCCGATTCTCTACTCCTCTACTTTCAAACGCGTTCCTTGCGCAT
CCAACACCACTGGAGGCTTGATGGCATTCACTACGCTAAAACTTGTGATG
CCTGGCTTGCAAAACTCGACAGAAACTACGCCAAAGCACGCCAAGTGCTG
CAAGAAGCTGGAGAAACAAATGTCACCAAAGCGCTCTCCAACTGGAGGCT
TTTCTTCATCGCATGTGGAGAAACCTTTCGCTACAATCATGGCAGAGACT
GGGCTGTCTCCCACTATCTTTTTGAAAAAGATAAGGAGTAGATGCCTTCC
GATTCTCTACTCCTCTACTTTCAAACGCGTTCCTTGCGCATCCAACACCA
CTGGAGGCTTGATGGCATTCACTACGCTAAAACTTGTGATGCCTGGCTTG
CAAAACTCGACAGAAACTACGCCAAAGCACGCCAAGTGCTGCAAGAAGCT
GGAGAAACAAATGTCACCAAAGCGCTCTCCAACTGGAGGCTTTTCTTCAT
CGCATGTGGAGAAACCTTTCGCTACAATCATGGCAGAGACTGGGCTGTCT
CCCACTATCTTTTTGAAAAAGATAAGGAGTAG
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