mRNA_M-pyrifera_M_contig90442.20973.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90442.20973.1
Unique NamemRNA_M-pyrifera_M_contig90442.20973.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90442.20973.1 vs. uniprot
Match: A0A7S1C845_9STRA (Deubiquitinating enzyme A (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C845_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.020e-32
Identity = 65/152 (42.76%), Postives = 90/152 (59.21%), Query Frame = 1
Query:    1 WLPRDSELLKPWGQGRGISVKAYRQPA---WQRTSNAGTRVLQAGSSPFERFRSALAKDNLRLVSIEGDGNCLFRSIAHQVYGTQTLHAVVRACCVRFIADNRDYFEPFCSLQGADGGFEGYIRLMARNGIWGGEPEIQAAATLYDRPIHVY 447
            WLPRD   +KPW     + +K YR  A   W+  + A  R +Q   S    +R  L +    L  ++GDGNCLFRS++HQVYG+   HAVVRA  VR++   RD+F PF +   A+  F+ Y+  MARNG WG +PEIQA   +Y+RP  ++
Sbjct:  177 WLPRDDPRIKPWCSHTAV-LKPYRPKARTYWRHHARA--RYVQNTDSRMHAYRRGLQRLGFALKPVDGDGNCLFRSVSHQVYGSDAHHAVVRAAAVRYMQAERDWFRPFVASDDAE--FDEYLERMARNGEWGDDPEIQAMCEIYNRPAAIF 323          
BLAST of mRNA_M-pyrifera_M_contig90442.20973.1 vs. uniprot
Match: F0X013_9STRA (Deubiquitinating enzyme A n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X013_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.100e-30
Identity = 59/149 (39.60%), Postives = 89/149 (59.73%), Query Frame = 1
Query:    1 WLPRDSELLKPWGQGRGISVKAYRQPAWQRTSNAGTRVLQAGSSPFERFRSALAKDNLRLVSIEGDGNCLFRSIAHQVYGTQTLHAVVRACCVRFIADNRDYFEPFCSLQGADGGFEGYIRLMARNGIWGGEPEIQAAATLYDRPIHVY 447
            W+P D   + P GQ       ++ + +   ++    R++QA +  F  +R +L + NL++ +++GDGNCLFRS++HQVYG    H VVR  CV ++   RDYFEP+  + G    F  Y++   +NG+WG +PEIQA   LYDRP  VY
Sbjct:  244 WVPIDPSRIAPVGQHSRRCTSSHSRLSSVESTLPRNRMIQAQNPRFLHYRESLLQHNLKIFTVDGDGNCLFRSVSHQVYGNDKYHEVVRRYCVDYMESERDYFEPY--VVGNMDDFLRYLKHKRKNGVWGDDPEIQALCELYDRPAEVY 390          
BLAST of mRNA_M-pyrifera_M_contig90442.20973.1 vs. uniprot
Match: A0A024GD58_9STRA (Deubiquitinating enzyme A n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024GD58_9STRA)

HSP 1 Score: 120 bits (302), Expect = 6.100e-29
Identity = 56/149 (37.58%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    1 WLPRDSELLKPWGQGRGISVKAYRQPAWQRTSNAGTRVLQAGSSPFERFRSALAKDNLRLVSIEGDGNCLFRSIAHQVYGTQTLHAVVRACCVRFIADNRDYFEPFCSLQGADGGFEGYIRLMARNGIWGGEPEIQAAATLYDRPIHVY 447
            W+P D   + P+GQ       ++ + +    +    R++QA +  F  +R +L + +L++ +++GDGNCLFRS++HQVYG    H VVR  C+ ++   +DYFEP+  + G    F  Y+    +NG+WG +PEIQA   LYDRP  VY
Sbjct:  215 WVPIDPSRIAPFGQHIRRRTSSHSRLSSVEPTLPRNRMIQAQNPRFLHYRDSLLQHDLKISTVDGDGNCLFRSVSHQVYGNDQFHEVVRRYCMDYMESEKDYFEPY--VVGNMDDFLRYLEHKRKNGVWGDDPEIQALCELYDRPAEVY 361          
BLAST of mRNA_M-pyrifera_M_contig90442.20973.1 vs. uniprot
Match: A0A5D6YD11_9STRA (Deubiquitinating enzyme A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YD11_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.400e-28
Identity = 61/150 (40.67%), Postives = 87/150 (58.00%), Query Frame = 1
Query:    1 WLPRDSELLKPWGQG-RGISVKAYRQPAWQRTSNAGTRVLQAGSSPFERFRSALAKDNLRLVSIEGDGNCLFRSIAHQVYGTQTLHAVVRACCVRFIADNRDYFEPFCSLQGADGGFEGYIRLMARNGIWGGEPEIQAAATLYDRPIHVY 447
            W+P   + + P G+  R  S  A RQ +     +A  RV +  +  F+ +R AL +  LR+  I+GDGNCLFRS++HQVYG    HA VRA C+ ++   ++YFEP+  + G    F  Y+    R G+WG +PE+QA   LYDRP  VY
Sbjct:  420 WIPFSPDTVAPLGEHTRHRSFAAQRQLSVA-PKHAHHRVFETRNPRFQHYREALERHGLRICPIDGDGNCLFRSVSHQVYGDDRHHAAVRAMCMDYMESEKEYFEPY--VVGDMAAFVRYLNYKRRAGVWGDDPELQAMCELYDRPAEVY 566          
BLAST of mRNA_M-pyrifera_M_contig90442.20973.1 vs. uniprot
Match: A0A5A8DQR2_CAFRO (Deubiquitinating enzyme A n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DQR2_CAFRO)

HSP 1 Score: 119 bits (299), Expect = 1.840e-28
Identity = 58/116 (50.00%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  112 VLQAGSSPFERFRSALAKDNLRLVSIEGDGNCLFRSIAHQVYGTQTLHAVVRACCVRFIADNRDYFEPFCSLQGADGGFEGYIRLMARNGIWGGEPEIQAAATLYDRPIHVYGPAP 459
             LQ+G++ F+RF + LA+  LR+   EGDGNCLFRSIAHQVYG   LHA  R   V ++A N ++   F  ++  D G   Y+R MARN +WGGEPE+ A   LY RPI V+  AP
Sbjct:  231 ALQSGTTDFDRFEAGLARSGLRIAPQEGDGNCLFRSIAHQVYGAPELHARCRQAAVDYLAANSEWLRGF--VEDGDEGVAAYLRSMARNAVWGGEPELVAFHELYRRPIEVWSGAP 344          
BLAST of mRNA_M-pyrifera_M_contig90442.20973.1 vs. uniprot
Match: A0A3M6VJM3_9STRA (Deubiquitinating enzyme A n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJM3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.990e-28
Identity = 62/155 (40.00%), Postives = 92/155 (59.35%), Query Frame = 1
Query:    1 WLPRDSELLKPWGQ-----GRGISVKAYRQPAWQRTSNAGTRVLQAGSSPFERFR-SALAKDNLRLVSIEGDGNCLFRSIAHQVYGTQTLHAVVRACCVRFIADNRDYFEPFCSLQGADGGFEGYIRLMARNGIWGGEPEIQAAATLYDRPIHVY 447
            W+P     + P G+     GRG +++  R+ A    +    RV+QA +  F  +R S L    LR+  IEGDGNCLFRS++HQ+YG  + HA+VRA C+ ++   ++YFEP+  + G    F  Y+R   R+G+WG +PE+QA   LYDRP  V+
Sbjct:  158 WIPFTPATVAPAGEHLQLRGRGSTLE-QRKMAVTAPNVTHRRVIQAQNPRFTHYRDSLLGTLGLRIYDIEGDGNCLFRSVSHQIYGNDSHHALVRAACMDYMESEKEYFEPY--VVGDMAAFMRYLRHKRRDGVWGDDPELQAMCELYDRPAEVF 309          
BLAST of mRNA_M-pyrifera_M_contig90442.20973.1 vs. uniprot
Match: G4Z036_PHYSP (Deubiquitinating enzyme A n=6 Tax=Phytophthora TaxID=4783 RepID=G4Z036_PHYSP)

HSP 1 Score: 117 bits (293), Expect = 7.960e-28
Identity = 62/155 (40.00%), Postives = 92/155 (59.35%), Query Frame = 1
Query:    1 WLPRDSELLKPWG-----QGRGISVKAYRQPAWQRTSNAGTRVLQAGSSPFERFRSAL-AKDNLRLVSIEGDGNCLFRSIAHQVYGTQTLHAVVRACCVRFIADNRDYFEPFCSLQGADGGFEGYIRLMARNGIWGGEPEIQAAATLYDRPIHVY 447
            W+P     + P G     +GRG +++  R+      +    RV+QA +  F  +R +L A   LR+  IEGDGNCLFRS++HQVYG  + HA+VRA C+ ++   ++YFEP+  + G    F  Y+R   R+G+WG +PE+QA   LYDRP  V+
Sbjct:  141 WIPFTPATVAPAGDHLQLRGRGSALE-QRKMVVDAPNVTHRRVIQAQNPRFTHYRDSLQATLGLRIHDIEGDGNCLFRSVSHQVYGDDSHHALVRAACMDYMESEKEYFEPY--VVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVF 292          
BLAST of mRNA_M-pyrifera_M_contig90442.20973.1 vs. uniprot
Match: A0A0P1AKP3_PLAHL (Deubiquitinating enzyme A n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AKP3_PLAHL)

HSP 1 Score: 117 bits (293), Expect = 1.210e-27
Identity = 62/155 (40.00%), Postives = 92/155 (59.35%), Query Frame = 1
Query:    1 WLPRDSELLKPWGQ-----GRGISVKAYRQPAWQRTSNAGTRVLQAGSSPFERFRSAL-AKDNLRLVSIEGDGNCLFRSIAHQVYGTQTLHAVVRACCVRFIADNRDYFEPFCSLQGADGGFEGYIRLMARNGIWGGEPEIQAAATLYDRPIHVY 447
            W+    E + P G+     GRG S+   R+     +++   RV+QA +  F  +R +L A   LR+  I GDGNCLFRS++HQVYG  + HA+VRA C+ ++   ++YFEP+  + G    F  Y+R   R+G+WG +PE+QA   LYDRP  V+
Sbjct:  374 WIQFTPERVAPAGEHLRLRGRG-SLLEQRKMELNASNSPHRRVIQAQNPRFTHYRDSLHAALGLRIFDIAGDGNCLFRSVSHQVYGNDSHHALVRAACMDYMESEKEYFEPY--VVGDMAAFMRYLRYKRRDGVWGDDPELQALCELYDRPAEVF 525          
BLAST of mRNA_M-pyrifera_M_contig90442.20973.1 vs. uniprot
Match: A0A2D4BI13_PYTIN (Deubiquitinating enzyme A n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI13_PYTIN)

HSP 1 Score: 116 bits (290), Expect = 1.620e-27
Identity = 59/150 (39.33%), Postives = 87/150 (58.00%), Query Frame = 1
Query:    1 WLPRDSELLKPWGQG-RGISVKAYRQPAWQRTSNAGTRVLQAGSSPFERFRSALAKDNLRLVSIEGDGNCLFRSIAHQVYGTQTLHAVVRACCVRFIADNRDYFEPFCSLQGADGGFEGYIRLMARNGIWGGEPEIQAAATLYDRPIHVY 447
            W+P   E + P G   R  +    R+ +     N  +RV++A +  F+ +R ALA   L + ++EGDGNCLFRS++HQ+YG    H +VR  C+ ++   ++YFEP+     AD  F  Y+    R+G+WG +PEIQA   LYDRP  VY
Sbjct:  109 WIPFSXETIAPAGXHIRTRTCSITRRLSVTPNVNR-SRVIEAQNPRFQHYRQALAAQGLSIFAVEGDGNCLFRSVSHQIYGDDRHHGLVRRLCMDYMESEKEYFEPYVVGDMAD--FLRYLAHKRRDGVWGDDPEIQAMCELYDRPAEVY 255          
BLAST of mRNA_M-pyrifera_M_contig90442.20973.1 vs. uniprot
Match: A0A3F2RFP2_9STRA (Deubiquitinating enzyme A n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RFP2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.630e-27
Identity = 62/155 (40.00%), Postives = 89/155 (57.42%), Query Frame = 1
Query:    1 WLPRDSELLKPWGQ-----GRGISVKAYRQPAWQRTSNAGTRVLQAGSSPFERFRSALAKD-NLRLVSIEGDGNCLFRSIAHQVYGTQTLHAVVRACCVRFIADNRDYFEPFCSLQGADGGFEGYIRLMARNGIWGGEPEIQAAATLYDRPIHVY 447
            W+P     + P G+     GRG +++  RQ      +    RV+QA +  F  +R +L     LR+  IEGDGNCLFRS++HQVYG    HA+VRA C+ ++   ++YFEP+  + G    F  YI    R+G+WG +PE+QA   LYDRP  V+
Sbjct:  337 WIPFTPVTVAPAGEHLQLRGRGNTLQ-QRQIVVDAPNTTHRRVIQAQNPRFTHYRDSLQSTLGLRIFDIEGDGNCLFRSVSHQVYGDDRHHALVRAACMDYMESEKEYFEPY--VVGDMAAFMRYINHKRRDGVWGDDPELQAMCELYDRPAEVF 488          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90442.20973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C845_9STRA2.020e-3242.76Deubiquitinating enzyme A (Fragment) n=1 Tax=Bicos... [more]
F0X013_9STRA1.100e-3039.60Deubiquitinating enzyme A n=1 Tax=Albugo laibachii... [more]
A0A024GD58_9STRA6.100e-2937.58Deubiquitinating enzyme A n=3 Tax=Albugo candida T... [more]
A0A5D6YD11_9STRA1.400e-2840.67Deubiquitinating enzyme A n=1 Tax=Pythium brassicu... [more]
A0A5A8DQR2_CAFRO1.840e-2850.00Deubiquitinating enzyme A n=4 Tax=Cafeteria roenbe... [more]
A0A3M6VJM3_9STRA4.990e-2840.00Deubiquitinating enzyme A n=1 Tax=Peronospora effu... [more]
G4Z036_PHYSP7.960e-2840.00Deubiquitinating enzyme A n=6 Tax=Phytophthora Tax... [more]
A0A0P1AKP3_PLAHL1.210e-2740.00Deubiquitinating enzyme A n=1 Tax=Plasmopara halst... [more]
A0A2D4BI13_PYTIN1.620e-2739.33Deubiquitinating enzyme A n=1 Tax=Pythium insidios... [more]
A0A3F2RFP2_9STRA1.630e-2740.00Deubiquitinating enzyme A n=4 Tax=Phytophthora ker... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90442contigM-pyrifera_M_contig90442:256..714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue4.6e-26
Seed eggNOG ortholog653948.CCA27095
KEGG koko:K12655
KEGG Pathwayko04622,map04622
Hectar predicted targeting categoryother localisation
EggNOG free text desc.thiol-dependent ubiquitin-specific protease activity
EggNOG OGsKOG2605@1,KOG2605@2759
EC3.4.19.12
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons1
Model size459
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.5712757-CDS-M-pyrifera_M_contig90442:255..7141622816816.5712757-CDS-M-pyrifera_M_contig90442:255..714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90442 256..714 +
1692278195.4502697-CDS-M-pyrifera_M_contig90442:255..7141692278195.4502697-CDS-M-pyrifera_M_contig90442:255..714Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90442 256..714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90442.20973.1prot_M-pyrifera_M_contig90442.20973.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90442 256..714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90442.20973.1

>prot_M-pyrifera_M_contig90442.20973.1 ID=prot_M-pyrifera_M_contig90442.20973.1|Name=mRNA_M-pyrifera_M_contig90442.20973.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
WLPRDSELLKPWGQGRGISVKAYRQPAWQRTSNAGTRVLQAGSSPFERFR
SALAKDNLRLVSIEGDGNCLFRSIAHQVYGTQTLHAVVRACCVRFIADNR
DYFEPFCSLQGADGGFEGYIRLMARNGIWGGEPEIQAAATLYDRPIHVYG
PAP
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mRNA from alignment at M-pyrifera_M_contig90442:256..714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90442.20973.1 ID=mRNA_M-pyrifera_M_contig90442.20973.1|Name=mRNA_M-pyrifera_M_contig90442.20973.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig90442:256..714+ (Macrocystis pyrifera P11B4 male)
TGGCTGCCCCGTGATTCGGAGCTGCTCAAGCCCTGGGGCCAAGGCAGAGG CATCTCGGTCAAGGCCTACCGCCAGCCGGCGTGGCAACGGACCTCAAACG CAGGCACAAGGGTGCTGCAAGCAGGGTCTTCTCCGTTCGAGCGATTTCGA TCTGCGCTCGCAAAGGACAACCTGCGGCTTGTGAGCATCGAAGGAGACGG AAACTGCCTCTTCCGCTCCATCGCACACCAAGTCTACGGCACGCAGACGC TCCATGCCGTCGTGAGGGCCTGCTGTGTGCGGTTCATCGCCGACAACAGA GACTACTTTGAGCCGTTTTGCTCCCTCCAAGGCGCTGACGGAGGCTTCGA AGGCTACATCCGACTCATGGCCAGGAACGGAATCTGGGGCGGAGAACCCG AAATCCAGGCAGCCGCCACCCTATACGACAGACCCATCCACGTCTACGGA CCTGCTCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90442:256..714+

>mRNA_M-pyrifera_M_contig90442.20973.1 ID=mRNA_M-pyrifera_M_contig90442.20973.1|Name=mRNA_M-pyrifera_M_contig90442.20973.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig90442:256..714+ (Macrocystis pyrifera P11B4 male)
TGGCTGCCCCGTGATTCGGAGCTGCTCAAGCCCTGGGGCCAAGGCAGAGG
CATCTCGGTCAAGGCCTACCGCCAGCCGGCGTGGCAACGGACCTCAAACG
CAGGCACAAGGGTGCTGCAAGCAGGGTCTTCTCCGTTCGAGCGATTTCGA
TCTGCGCTCGCAAAGGACAACCTGCGGCTTGTGAGCATCGAAGGAGACGG
AAACTGCCTCTTCCGCTCCATCGCACACCAAGTCTACGGCACGCAGACGC
TCCATGCCGTCGTGAGGGCCTGCTGTGTGCGGTTCATCGCCGACAACAGA
GACTACTTTGAGCCGTTTTGCTCCCTCCAAGGCGCTGACGGAGGCTTCGA
AGGCTACATCCGACTCATGGCCAGGAACGGAATCTGGGGCGGAGAACCCG
AAATCCAGGCAGCCGCCACCCTATACGACAGACCCATCCACGTCTACGGA
CCTGCTCCGTGGCTGCCCCGTGATTCGGAGCTGCTCAAGCCCTGGGGCCA
AGGCAGAGGCATCTCGGTCAAGGCCTACCGCCAGCCGGCGTGGCAACGGA
CCTCAAACGCAGGCACAAGGGTGCTGCAAGCAGGGTCTTCTCCGTTCGAG
CGATTTCGATCTGCGCTCGCAAAGGACAACCTGCGGCTTGTGAGCATCGA
AGGAGACGGAAACTGCCTCTTCCGCTCCATCGCACACCAAGTCTACGGCA
CGCAGACGCTCCATGCCGTCGTGAGGGCCTGCTGTGTGCGGTTCATCGCC
GACAACAGAGACTACTTTGAGCCGTTTTGCTCCCTCCAAGGCGCTGACGG
AGGCTTCGAAGGCTACATCCGACTCATGGCCAGGAACGGAATCTGGGGCG
GAGAACCCGAAATCCAGGCAGCCGCCACCCTATACGACAGACCCATCCAC
GTCTACGGACCTGCTCCG
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