mRNA_M-pyrifera_M_contig90438.20971.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90438.20971.1
Unique NamemRNA_M-pyrifera_M_contig90438.20971.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90438.20971.1 vs. uniprot
Match: A0A7S0P8C9_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P8C9_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 1.150e-27
Identity = 63/134 (47.01%), Postives = 86/134 (64.18%), Query Frame = 1
Query:   16 AHRRSRERLQQVITTMAEMSTTEDHLDATKMILRAAYSLLQCQRVTLFSLDRARGRLVIRESRDAVGVMIPMNKGLAGAVAMSGSLLNVADAYEDERFDSSVDRQTGFRTQSVLCCAVRDASGHIIAVLQAVNR 417
            A RR+ E L  +    AE +  E      + I+R AY +L+C+RVTL   D     LVI+ES+DAVGV++P  KGLAG  A +G L+N+ADA++DERFD + DR+T FRT SVL   +R   G ++ VL A+NR
Sbjct:  242 AQRRAEEMLVLMRDIPAE-AAREGTSGVVRAIIRTAYRMLECERVTLLLEDPVTKNLVIQESKDAVGVVVPRGKGLAGFAAAAGRLINIADAHDDERFDPATDRRTHFRTGSVLAAPIRCEGGAVVGVLMAINR 374          
BLAST of mRNA_M-pyrifera_M_contig90438.20971.1 vs. uniprot
Match: A0A482R7I0_9ARCH (GAF domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482R7I0_9ARCH)

HSP 1 Score: 114 bits (286), Expect = 3.820e-27
Identity = 57/126 (45.24%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   40 LQQVITTMAEMSTTEDHLDATKMILRAAYSLLQCQRVTLFSLDRARGRLVIRESRDAVGVMIPMNKGLAGAVAMSGSLLNVADAYEDERFDSSVDRQTGFRTQSVLCCAVRDASGHIIAVLQAVNR 417
            L  ++  ++  S T    D    ++ +AY LL  QRVTL  +D +R  LV+  S+DA G+ IP+  GLAG  A +G  + + DAY+D RFD SVD  TGFRT+ VLC  +RDASG ++ V+QA+NR
Sbjct:   59 LSSLMRQISSASNTTRFTDVVATVIDSAYELLDVQRVTLLLVDESRRYLVLANSQDAEGIRIPLRSGLAGYCARTGKSIMIEDAYKDARFDKSVDAATGFRTRGVLCVPIRDASGDVLGVIQAINR 184          
BLAST of mRNA_M-pyrifera_M_contig90438.20971.1 vs. uniprot
Match: A0A5A8DZF5_CAFRO (Phosphodiesterase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DZF5_CAFRO)

HSP 1 Score: 114 bits (286), Expect = 6.700e-27
Identity = 63/134 (47.01%), Postives = 86/134 (64.18%), Query Frame = 1
Query:   16 AHRRSRERLQQVITTMAEMSTTEDHLDATKMILRAAYSLLQCQRVTLFSLDRARGRLVIRESRDAVGVMIPMNKGLAGAVAMSGSLLNVADAYEDERFDSSVDRQTGFRTQSVLCCAVRDASGHIIAVLQAVNR 417
            A RR+ E L  +    AE +  E      + I+R AY +L+C+RVTL   D     LVI+ES+DAVGV++P  KGLAG  A +G L+N+ADA++DERFD + DR+T FRT SVL   +R   G ++ VL A+NR
Sbjct:  226 AQRRAEEMLVLMRDIPAE-AAREGTSGVVRAIIRTAYRMLECERVTLLLEDPVTKNLVIQESKDAVGVVVPRGKGLAGFAAAAGRLINIADAHDDERFDPATDRRTHFRTGSVLAAPIRCEGGAVVGVLMAINR 358          
BLAST of mRNA_M-pyrifera_M_contig90438.20971.1 vs. uniprot
Match: A0A1V9ZE78_9STRA (Dual 3',5'-cyclic-AMP and-GMP phosphodiesterase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZE78_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.450e-25
Identity = 53/126 (42.06%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   40 LQQVITTMAEMSTTEDHLDATKMILRAAYSLLQCQRVTLFSLDRARGRLVIRESRDAVGVMIPMNKGLAGAVAMSGSLLNVADAYEDERFDSSVDRQTGFRTQSVLCCAVRDASGHIIAVLQAVNR 417
            L+++I     ++   D  +AT  I++    +L C+R TLF LD AR  L +  +  A  + +P+ KG+AG VA SG L+N+A+AY D  FDS  D QTG+ T+S+LC  VR+ +G+I+ V+QA+NR
Sbjct:  109 LEKLIQAFRIITMQLDPFEATNSIIKQTCKILNCERATLFKLDAARHVLNLSVAEGAAEISVPIGKGIAGIVASSGKLINIANAYADPNFDSQYDMQTGYHTRSILCVPVRNGNGNIVGVMQALNR 234          
BLAST of mRNA_M-pyrifera_M_contig90438.20971.1 vs. uniprot
Match: A0A067CR89_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CR89_SAPPC)

HSP 1 Score: 106 bits (265), Expect = 2.420e-24
Identity = 52/126 (41.27%), Postives = 79/126 (62.70%), Query Frame = 1
Query:   40 LQQVITTMAEMSTTEDHLDATKMILRAAYSLLQCQRVTLFSLDRARGRLVIRESRDAVGVMIPMNKGLAGAVAMSGSLLNVADAYEDERFDSSVDRQTGFRTQSVLCCAVRDASGHIIAVLQAVNR 417
            L+++I     ++   D L+AT  I++    +L C+R TLF LD AR  L +  +     + +P+ KG+AG VA +G L+N+A+AY D  FDS  D QTG+ T+S+LC  VR+  G I+ V+QA+NR
Sbjct:  111 LEKLIQAFRVITMQLDPLEATNSIIKQTCKILNCERSTLFKLDAARQTLNLSVAEGVAEISVPVGKGIAGVVASTGKLVNIANAYADPNFDSQYDMQTGYHTRSILCVPVRNGHGAIVGVMQALNR 236          
BLAST of mRNA_M-pyrifera_M_contig90438.20971.1 vs. uniprot
Match: A0A4P9X3P9_9FUNG (Uncharacterized protein n=2 Tax=Caulochytrium protostelioides TaxID=1555241 RepID=A0A4P9X3P9_9FUNG)

HSP 1 Score: 107 bits (266), Expect = 3.260e-24
Identity = 56/126 (44.44%), Postives = 82/126 (65.08%), Query Frame = 1
Query:   40 LQQVITTMAEMSTTEDHLDATKMILRAAYSLLQCQRVTLFSLDRARGRLVIRESRDAVGVMIPMNKGLAGAVAMSGSLLNVADAYEDERFDSSVDRQTGFRTQSVLCCAVRDASGHIIAVLQAVNR 417
            +Q ++ T   MS+  D       +++ A  LLQ +R TLF LDR + +L    +  +V + IPM  G+AG VA +G+ LN+ DAY D+RFD SVD +TGFRT+++LC A+RDASG I+ V Q +N+
Sbjct:  438 IQMLLGTANLMSSDMDTGGMLTAVMQTAKELLQAERSTLFLLDREQQQLWSTVAGGSVQIRIPMTAGIAGHVAQTGTTLNIPDAYNDKRFDRSVDARTGFRTRTILCMALRDASGQIMGVCQVINK 563          
BLAST of mRNA_M-pyrifera_M_contig90438.20971.1 vs. uniprot
Match: A0A2D4CBY7_PYTIN (Dual 3',5'-cyclic-AMP and-GMP phosphodiesterase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBY7_PYTIN)

HSP 1 Score: 105 bits (263), Expect = 4.770e-24
Identity = 51/126 (40.48%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   40 LQQVITTMAEMSTTEDHLDATKMILRAAYSLLQCQRVTLFSLDRARGRLVIRESRDAVGVMIPMNKGLAGAVAMSGSLLNVADAYEDERFDSSVDRQTGFRTQSVLCCAVRDASGHIIAVLQAVNR 417
            L++ I     ++   D  +AT MI++ A  +L  +R TLF  D+A   LV++ S  A  +++P  KG+AG VA +G  +N+ADAY D  FDS  D+QTG++T+S+LC  VR+    I+AV+Q +N+
Sbjct:  121 LEKAINACRLINMQLDPAEATAMIIKQACVVLNAERATLFIYDKATDSLVLKVSEGASDLVVPFGKGIAGTVAATGKAVNIADAYSDPTFDSQYDKQTGYKTRSILCAPVRNGDNRIVAVIQVLNK 246          
BLAST of mRNA_M-pyrifera_M_contig90438.20971.1 vs. uniprot
Match: A0A5A8DPW6_CAFRO (Phosphodiesterase n=5 Tax=Sar TaxID=2698737 RepID=A0A5A8DPW6_CAFRO)

HSP 1 Score: 104 bits (260), Expect = 2.150e-23
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 1
Query:   52 ITTMAEMSTTEDHL-DATKMILRAAYSLLQCQRVTLFSLDRARGRLVIRESRDAVGVMIPMNKGLAGAVAMSGSLLNVADAYEDERFDSSVDRQTGFRTQSVLCCAVRDASGHIIAVLQAVNR 417
            + +M   + +ED L +  K I+   Y L+   RV++F +DR    LV+  S DA G  +P+  G+AGAVA SG + NVADAY D RF+ S D+QT +RT+SVL   V  A G +IAV+QA+NR
Sbjct:  676 LLSMTRHALSEDDLGNVVKRIVETGYDLIPADRVSVFLVDREAEELVLIVSEDAAGYHMPIGAGIAGAVATSGQVENVADAYTDVRFNQSFDKQTNYRTRSVLAVPVHKAKGDVIAVIQAINR 798          
BLAST of mRNA_M-pyrifera_M_contig90438.20971.1 vs. uniprot
Match: A0A2R5GEK1_9STRA (cGMP-specific 3',5'-cyclic phosphodiesterase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GEK1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.670e-23
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 1
Query:   34 ERLQQVITTMAEMSTTEDHLDATKMILRAAYSLLQCQRVTLFSLDRARGRLVIRESRDAVGVMIPMNKGLAGAVAMSGSLLNVADAYEDERFDSSVDRQTGFRTQSVLCCAVRDASGHIIAVLQAVNR 417
            E L+Q I +   ++   D  DAT++I++    LL C R +LF+LD     L +  ++ A  + +P+ +G+AG+VA +G   N+ADAY+D RF+S  D  TG+RT+S+L   V+DA   +I VLQA+NR
Sbjct:  120 EILEQAIASSRAIAGQLDPYDATEVIIKETCELLHCDRASLFTLDEGSRELQLMVAKGAKSIRLPIGQGVAGSVAATGVRCNIADAYDDSRFNSEHDANTGYRTKSILAVPVQDADSKVIGVLQAINR 247          
BLAST of mRNA_M-pyrifera_M_contig90438.20971.1 vs. uniprot
Match: A0A813BXV4_9DINO (Pde11 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BXV4_9DINO)

HSP 1 Score: 102 bits (255), Expect = 2.690e-23
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   85 DHLDATKMILRAAYSLLQCQRVTLFSLDRARGRLVIRESRDAVGVMIPMNKGLAGAVAMSGSLLNVADAYEDERFDSSVDRQTGFRTQSVLCCAVRDASGHIIAVLQAVNR 417
            D + AT  I+  A  +L   R T+F +D    +L I  +  A G+ +P+ KG+AG VA SG L N+ DAYED RFDS+ D+++G+RT+SVL   VRD  G I+ VLQ +N+
Sbjct:    4 DPIKATVNIISEACGILSADRATIFKMDETGEQLEIMVAEGASGIRVPVGKGIAGTVAASGELENIKDAYEDARFDSTFDKKSGYRTESVLAAPVRDGQGAIVGVLQVINK 114          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90438.20971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0P8C9_CAFRO1.150e-2747.01Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A482R7I0_9ARCH3.820e-2745.24GAF domain-containing protein (Fragment) n=1 Tax=a... [more]
A0A5A8DZF5_CAFRO6.700e-2747.01Phosphodiesterase n=4 Tax=Cafeteria roenbergensis ... [more]
A0A1V9ZE78_9STRA2.450e-2542.06Dual 3',5'-cyclic-AMP and-GMP phosphodiesterase n=... [more]
A0A067CR89_SAPPC2.420e-2441.27Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A4P9X3P9_9FUNG3.260e-2444.44Uncharacterized protein n=2 Tax=Caulochytrium prot... [more]
A0A2D4CBY7_PYTIN4.770e-2440.48Dual 3',5'-cyclic-AMP and-GMP phosphodiesterase, p... [more]
A0A5A8DPW6_CAFRO2.150e-2345.53Phosphodiesterase n=5 Tax=Sar TaxID=2698737 RepID=... [more]
A0A2R5GEK1_9STRA2.670e-2340.63cGMP-specific 3',5'-cyclic phosphodiesterase n=1 T... [more]
A0A813BXV4_9DINO2.690e-2345.05Pde11 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90438contigM-pyrifera_M_contig90438:1..417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog112098.XP_008613245.1
KEGG rclassRC00296
KEGG koko:K13294
KEGG ReactionR00191
KEGG Pathwayko00230,map00230
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3',5'-cyclic-nucleotide phosphodiesterase activity
EggNOG OGsKOG3689@1,KOG3689@2759
EC3.1.4.53
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.5059402-CDS-M-pyrifera_M_contig90438:0..4171622816816.5059402-CDS-M-pyrifera_M_contig90438:0..417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90438 1..417 -
1692278195.4275434-CDS-M-pyrifera_M_contig90438:0..4171692278195.4275434-CDS-M-pyrifera_M_contig90438:0..417Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90438 1..417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90438.20971.1prot_M-pyrifera_M_contig90438.20971.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90438 1..417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90438.20971.1

>prot_M-pyrifera_M_contig90438.20971.1 ID=prot_M-pyrifera_M_contig90438.20971.1|Name=mRNA_M-pyrifera_M_contig90438.20971.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
SIALAAHRRSRERLQQVITTMAEMSTTEDHLDATKMILRAAYSLLQCQRV
TLFSLDRARGRLVIRESRDAVGVMIPMNKGLAGAVAMSGSLLNVADAYED
ERFDSSVDRQTGFRTQSVLCCAVRDASGHIIAVLQAVNR
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mRNA from alignment at M-pyrifera_M_contig90438:1..417-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90438.20971.1 ID=mRNA_M-pyrifera_M_contig90438.20971.1|Name=mRNA_M-pyrifera_M_contig90438.20971.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig90438:1..417- (Macrocystis pyrifera P11B4 male)
TCTATCGCGCTGGCAGCGCACCGTCGTTCGCGGGAGCGGCTGCAACAGGT GATCACGACCATGGCGGAGATGAGCACGACGGAAGACCACCTGGACGCGA CGAAAATGATCCTCCGCGCCGCTTACTCGCTGTTGCAGTGCCAGCGGGTG ACGCTGTTCAGCCTGGACCGGGCGAGGGGCAGGCTGGTGATCCGTGAGAG TCGCGACGCCGTCGGAGTGATGATCCCAATGAACAAAGGTCTCGCTGGAG CGGTGGCCATGTCAGGCAGTCTGCTCAATGTGGCCGACGCATACGAGGAT GAGCGCTTCGATTCTTCCGTGGACCGGCAAACCGGCTTCCGAACACAGAG CGTGCTGTGTTGCGCAGTGCGAGATGCAAGTGGCCACATCATCGCAGTGC TACAGGCTGTAAACCGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90438:1..417-

>mRNA_M-pyrifera_M_contig90438.20971.1 ID=mRNA_M-pyrifera_M_contig90438.20971.1|Name=mRNA_M-pyrifera_M_contig90438.20971.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig90438:1..417- (Macrocystis pyrifera P11B4 male)
TCTATCGCGCTGGCAGCGCACCGTCGTTCGCGGGAGCGGCTGCAACAGGT
GATCACGACCATGGCGGAGATGAGCACGACGGAAGACCACCTGGACGCGA
CGAAAATGATCCTCCGCGCCGCTTACTCGCTGTTGCAGTGCCAGCGGGTG
ACGCTGTTCAGCCTGGACCGGGCGAGGGGCAGGCTGGTGATCCGTGAGAG
TCGCGACGCCGTCGGAGTGATGATCCCAATGAACAAAGGTCTCGCTGGAG
CGGTGGCCATGTCAGGCAGTCTGCTCAATGTGGCCGACGCATACGAGGAT
GAGCGCTTCGATTCTTCCGTGGACCGGCAAACCGGCTTCCGAACACAGAG
CGTGCTGTGTTGCGCAGTGCGAGATGCAAGTGGCCACATCATCGCAGTGC
TACAGGCTGTAAACCGGTCTATCGCGCTGGCAGCGCACCGTCGTTCGCGG
GAGCGGCTGCAACAGGTGATCACGACCATGGCGGAGATGAGCACGACGGA
AGACCACCTGGACGCGACGAAAATGATCCTCCGCGCCGCTTACTCGCTGT
TGCAGTGCCAGCGGGTGACGCTGTTCAGCCTGGACCGGGCGAGGGGCAGG
CTGGTGATCCGTGAGAGTCGCGACGCCGTCGGAGTGATGATCCCAATGAA
CAAAGGTCTCGCTGGAGCGGTGGCCATGTCAGGCAGTCTGCTCAATGTGG
CCGACGCATACGAGGATGAGCGCTTCGATTCTTCCGTGGACCGGCAAACC
GGCTTCCGAACACAGAGCGTGCTGTGTTGCGCAGTGCGAGATGCAAGTGG
CCACATCATCGCAGTGCTACAGGCTGTAAACCGG
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