mRNA_M-pyrifera_M_contig9043.20966.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9043.20966.1
Unique NamemRNA_M-pyrifera_M_contig9043.20966.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9043.20966.1 vs. uniprot
Match: A0A6H5K0I2_9PHAE (OB_NTP_bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.100e-23
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:  121 DWAQEAEDLSVDLAEFMLQTIGYDVKSLSPRHVEAMLVDSLRLTDPAEVRRILQGYPDLPEPNEVAEAPPP 333
            DWAQEAE L+VDLAEFMLQ+IGYDVKS+SPRHVEA+LVD+ RLTDPAEVRRIL G+P LP  ++  + P P
Sbjct:  430 DWAQEAEALAVDLAEFMLQSIGYDVKSVSPRHVEALLVDTHRLTDPAEVRRILGGHPSLPGEDQQNKEPCP 500
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BLAST of mRNA_M-pyrifera_M_contig9043.20966.1 vs. uniprot
Match: D8LEZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEZ4_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.710e-22
Identity = 51/71 (71.83%), Postives = 60/71 (84.51%), Query Frame = 1 
Query:  121 DWAQEAEDLSVDLAEFMLQTIGYDVKSLSPRHVEAMLVDSLRLTDPAEVRRILQGYPDLPEPNEVAEAPPP 333
            DWAQEAE L+VDLAEFMLQ+IGYDVKS+SPRHVEA+LVD+LRL DPAEVRR+L  YP LP  ++  + P P
Sbjct: 1391 DWAQEAEALAVDLAEFMLQSIGYDVKSVSPRHVEALLVDTLRLRDPAEVRRVLGEYPGLPGEDQQNKKPCP 1461
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9043.20966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0I2_9PHAE7.100e-2373.24OB_NTP_bind domain-containing protein n=1 Tax=Ecto... [more]
D8LEZ4_ECTSI2.710e-2271.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9043contigM-pyrifera_M_contig9043:7810..9523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue9.6e-20
Seed eggNOG ortholog2880.D8LEZ4
Preferred nameDHX34
KEGG koko:K20101
Hectar predicted targeting categoryother localisation
GOsGO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009056,GO:0009057,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0034641,GO:0034655,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0061013,GO:0065007,GO:0070035,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:2000622,GO:2000623
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0922@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Exons2
Model size530
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.2017214-CDS-M-pyrifera_M_contig9043:7810..81531622816816.2017214-CDS-M-pyrifera_M_contig9043:7810..8153Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9043 7811..8153 -
1692278195.278945-CDS-M-pyrifera_M_contig9043:7810..81531692278195.278945-CDS-M-pyrifera_M_contig9043:7810..8153Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9043 7811..8153 -
1622816816.2143993-CDS-M-pyrifera_M_contig9043:9338..95231622816816.2143993-CDS-M-pyrifera_M_contig9043:9338..9523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9043 9339..9523 -
1692278195.291911-CDS-M-pyrifera_M_contig9043:9338..95231692278195.291911-CDS-M-pyrifera_M_contig9043:9338..9523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9043 9339..9523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9043.20966.1prot_M-pyrifera_M_contig9043.20966.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9043 7811..9523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9043.20966.1

>prot_M-pyrifera_M_contig9043.20966.1 ID=prot_M-pyrifera_M_contig9043.20966.1|Name=mRNA_M-pyrifera_M_contig9043.20966.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
GGDENGGGGDPREAKRWQKQGQEQQWQEQGRQWQSQEKVVDWAQEAEDLS
VDLAEFMLQTIGYDVKSLSPRHVEAMLVDSLRLTDPAEVRRILQGYPDLP
EPNEVAEAPPPHQAGRWGNDDDNGSDNDHRHHHHEAAGRGDEDDDDDDDR
EAARDGARADERTGRVDRGASGRRGG
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mRNA from alignment at M-pyrifera_M_contig9043:7810..9523-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9043.20966.1 ID=mRNA_M-pyrifera_M_contig9043.20966.1|Name=mRNA_M-pyrifera_M_contig9043.20966.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1714bp|location=Sequence derived from alignment at M-pyrifera_M_contig9043:7810..9523- (Macrocystis pyrifera P11B4 male)
GGTGGAGACGAGAACGGTGGCGGCGGTGATCCGAGGGAAGCGAAGCGCTG
GCAGAAGCAGGGACAGGAACAGCAGTGGCAGGAACAGGGACGGCAGTGGC
AGAGTCAGGAGAAGGTCGTTGATTGGGCGCAGGAGGCGGAAGACCTGTCG
GTGGATCTGGCCGAGTTCATGCTCCAGACGATCGGGTACATATATTACGC
GCTGAGTAACAAAACACGCCACGCACCGCATTTTATTTGTTTTTGTTCCT
TGTCATCGCTTTCACTTTACAACTTGCTCGTGGGAGGTGTGTGTCGACAC
ACGCACCATCTACTGACTTGTATCGTACATACGAGTACTACGTTTTTGTT
TTTTTCTTGTGTCTCCAGTTTTTGCTTGCCAGCGTTTAGTTTCGGGGGGT
TGCCCTCAGTGGCCTTCTGGTGTAGCCGTGGTCACTGGTGTCGTTCCCCT
CTCACACGCGGTACTTGTCTTCGTATTTTGTCGTGCCGAGGGTTCAGCAT
TCCCACTGCTCGTCGTTTTTCATCGATTTTCGCCGACTCGCGCTCCCGTG
CCTTCGACGGCTCGAGAGAAAGGTACCGAAAGTACCTGTTTTGGTTTTTG
AGCCCGCTGCGGGCATAGAACCAAGACCCTCAAACCAGCAGAAGTGATAG
TGTGCCTGTTGACATATAGTACAGCACGACCATGGCACGCGTTGCCGCGC
TGTTCCCTCAGGCGTTGCCATGTTGACATATTGCCATATTACGTGTGTAC
AGTATGGCGATCGGGGTGGTAGTGGTCGGTGTCAGGGTGAAGGTTAGAGT
TCGGCCGGGAATTGCCGAACCGAACAGTCAAAAGTGACAACCAACTTGAG
TTTGGTTGTAGCATACCCCCCCCCCCCCCCCCGGTCCACGCCTCCGAAAT
AGGGTTAACCTTTTAAATCAATGCTGCCTCTGTTGCTGCTGCTACTCCTG
CTTCTGCTGTGTACACCAGTCTGATGGTATGTATGAGGAACATTCAGATT
GCCACAACAGGTCCGAGTGCACCTCATGATGTTTATGAACAGACTGCTAC
GCTTCAATGTGCTGTCACCAGTCTATTACGGGGGTTCATAGTTAATAGGA
CCTATGGTATAAATAAAAACCCATATATTTACCTATTTTTACTAGCAATA
TTTGGTCCTATTTACTATGGTCCCCCGTAAAAGCCCTATTTCGTGATATC
TGCGGTACGCCCTACCAATCGACTCGAAACGATTGATCTCTCGACTCGCG
CGCGGACGCGGATGCGCTCTTGTCTCACTAGTTTTTTGTACACCAGCGAT
ACACCCCTCCCCGCCTTGCGCCCTCCCCTATCCATTCCCGTGCTTCTGCT
CCGCGGCTGCGCGCCGAAAGGTACGACGTAAAGTCGCTCTCTCCGCGACA
CGTGGAGGCCATGCTCGTCGACAGCCTGCGCCTTACAGACCCCGCAGAGG
TCCGGCGCATTCTGCAGGGGTATCCGGATCTGCCGGAGCCGAACGAAGTA
GCAGAAGCACCGCCGCCACACCAGGCGGGGAGGTGGGGCAACGATGACGA
CAATGGCAGCGACAACGACCACCGCCATCACCACCACGAGGCCGCGGGGA
GAGGGGACGAAGACGACGACGACGACGACGACCGTGAGGCCGCGCGCGAT
GGTGCCAGGGCGGATGAACGAACGGGAAGAGTCGATCGCGGGGCCAGCGG
CAGAAGAGGCGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9043:7810..9523-

>mRNA_M-pyrifera_M_contig9043.20966.1 ID=mRNA_M-pyrifera_M_contig9043.20966.1|Name=mRNA_M-pyrifera_M_contig9043.20966.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig9043:7810..9523- (Macrocystis pyrifera P11B4 male)
GGTGGAGACGAGAACGGTGGCGGCGGTGATCCGAGGGAAGCGAAGCGCTG
GCAGAAGCAGGGACAGGAACAGCAGTGGCAGGAACAGGGACGGCAGTGGC
AGAGTCAGGAGAAGGTCGTTGATTGGGCGCAGGAGGCGGAAGACCTGTCG
GTGGATCTGGCCGAGTTCATGCTCCAGACGATCGGGGTGGAGACGAGAAC
GGTGGCGGCGGTGATCCGAGGGAAGCGAAGCGCTGGCAGAAGCAGGGACA
GGAACAGCAGTGGCAGGAACAGGGACGGCAGTGGCAGAGTCAGGAGAAGG
TCGTTGATTGGGCGCAGGAGGCGGAAGACCTGTCGGTGGATCTGGCCGAG
TTCATGCTCCAGACGATCGGGTACGACGTAAAGTCGCTCTCTCCGCGACA
CGTGGAGGCCATGCTCGTCGACAGCCTGCGCCTTACAGACCCCGCAGAGG
TCCGGCGCATTCTGCAGGGGTATCCGGATCTGCCGGAGCCGAACGAAGTA
GCAGAAGCACCGCCGCCACACCAGGCGGGGAGGTGGGGCAACGATGACGA
CAATGGCAGCGACAACGACCACCGCCATCACCACCACGAGGCCGCGGGGA
GAGGGGACGAAGACGACGACGACGACGACGACCGTGAGGCCGCGCGCGAT
GGTGCCAGGGCGGATGAACGAACGGGAAGAGTCGATCGCGGGGCCAGCGG
CAGAAGAGGCGGCGTACGACGTAAAGTCGCTCTCTCCGCGACACGTGGAG
GCCATGCTCGTCGACAGCCTGCGCCTTACAGACCCCGCAGAGGTCCGGCG
CATTCTGCAGGGGTATCCGGATCTGCCGGAGCCGAACGAAGTAGCAGAAG
CACCGCCGCCACACCAGGCGGGGAGGTGGGGCAACGATGACGACAATGGC
AGCGACAACGACCACCGCCATCACCACCACGAGGCCGCGGGGAGAGGGGA
CGAAGACGACGACGACGACGACGACCGTGAGGCCGCGCGCGATGGTGCCA
GGGCGGATGAACGAACGGGAAGAGTCGATCGCGGGGCCAGCGGCAGAAGA
GGCGGC
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