mRNA_M-pyrifera_M_contig9043.20964.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9043.20964.1
Unique NamemRNA_M-pyrifera_M_contig9043.20964.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9043.20964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9043contigM-pyrifera_M_contig9043:4374..4831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size458
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.2461736-CDS-M-pyrifera_M_contig9043:4373..47841622816816.2461736-CDS-M-pyrifera_M_contig9043:4373..4784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9043 4374..4784 +
1692278195.3063998-CDS-M-pyrifera_M_contig9043:4373..47841692278195.3063998-CDS-M-pyrifera_M_contig9043:4373..4784Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9043 4374..4784 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.2580504-UTR-M-pyrifera_M_contig9043:4784..48311622816816.2580504-UTR-M-pyrifera_M_contig9043:4784..4831Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9043 4785..4831 +
1692278195.3162363-UTR-M-pyrifera_M_contig9043:4784..48311692278195.3162363-UTR-M-pyrifera_M_contig9043:4784..4831Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9043 4785..4831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9043.20964.1prot_M-pyrifera_M_contig9043.20964.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9043 4374..4784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9043.20964.1

>prot_M-pyrifera_M_contig9043.20964.1 ID=prot_M-pyrifera_M_contig9043.20964.1|Name=mRNA_M-pyrifera_M_contig9043.20964.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MVLLWSLCWGGSVDSPRAKESKKADRCNRGNALVASVRWLEGRHANQQLR
RARHDSATESLKKSVSLLRLVRYFQATAAQRECLPHQCLRGSDMYRTAPR
KSAASYRNNQQSLWRSLCRCGCQCRCRGKCCWRGRC*
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mRNA from alignment at M-pyrifera_M_contig9043:4374..4831+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9043.20964.1 ID=mRNA_M-pyrifera_M_contig9043.20964.1|Name=mRNA_M-pyrifera_M_contig9043.20964.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=458bp|location=Sequence derived from alignment at M-pyrifera_M_contig9043:4374..4831+ (Macrocystis pyrifera P11B4 male)
ATGGTGCTGTTGTGGTCCCTGTGTTGGGGCGGTAGCGTCGACTCCCCAAG
AGCAAAAGAGAGCAAGAAGGCGGACCGATGCAACCGGGGAAACGCACTCG
TGGCGTCGGTACGCTGGCTGGAGGGACGACATGCCAATCAACAATTAAGA
CGAGCGCGGCACGACTCCGCGACAGAGTCTCTCAAGAAATCTGTGTCCCT
CCTCCGGCTGGTGCGGTACTTTCAAGCGACCGCCGCTCAACGAGAATGCC
TACCGCACCAGTGTCTCCGCGGATCAGACATGTATAGAACGGCTCCGCGT
AAGTCGGCGGCCTCGTACAGAAACAACCAGCAGTCTCTGTGGCGTAGCCT
CTGTCGGTGTGGGTGCCAGTGTCGTTGCCGAGGTAAATGTTGTTGGCGAG
GTCGATGTTGATTGAATCAGGGAGGGGGGAAAAGGCATATGACAGCAGCC
ACGTTGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9043:4374..4831+

>mRNA_M-pyrifera_M_contig9043.20964.1 ID=mRNA_M-pyrifera_M_contig9043.20964.1|Name=mRNA_M-pyrifera_M_contig9043.20964.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig9043:4374..4831+ (Macrocystis pyrifera P11B4 male)
ATGGTGCTGTTGTGGTCCCTGTGTTGGGGCGGTAGCGTCGACTCCCCAAG
AGCAAAAGAGAGCAAGAAGGCGGACCGATGCAACCGGGGAAACGCACTCG
TGGCGTCGGTACGCTGGCTGGAGGGACGACATGCCAATCAACAATTAAGA
CGAGCGCGGCACGACTCCGCGACAGAGTCTCTCAAGAAATCTGTGTCCCT
CCTCCGGCTGGTGCGGTACTTTCAAGCGACCGCCGCTCAACGAGAATGCC
TACCGCACCAGTGTCTCCGCGGATCAGACATGTATAGAACGGCTCCGCGT
AAGTCGGCGGCCTCGTACAGAAACAACCAGCAGTCTCTGTGGCGTAGCCT
CTGTCGGTGTGGGTGCCAGTGTCGTTGCCGAGGTAAATGTTGTTGGCGAG
GTCGATGTTGAATGGTGCTGTTGTGGTCCCTGTGTTGGGGCGGTAGCGTC
GACTCCCCAAGAGCAAAAGAGAGCAAGAAGGCGGACCGATGCAACCGGGG
AAACGCACTCGTGGCGTCGGTACGCTGGCTGGAGGGACGACATGCCAATC
AACAATTAAGACGAGCGCGGCACGACTCCGCGACAGAGTCTCTCAAGAAA
TCTGTGTCCCTCCTCCGGCTGGTGCGGTACTTTCAAGCGACCGCCGCTCA
ACGAGAATGCCTACCGCACCAGTGTCTCCGCGGATCAGACATGTATAGAA
CGGCTCCGCGTAAGTCGGCGGCCTCGTACAGAAACAACCAGCAGTCTCTG
TGGCGTAGCCTCTGTCGGTGTGGGTGCCAGTGTCGTTGCCGAGGTAAATG
TTGTTGGCGAGGTCGATGTTGA
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