mRNA_M-pyrifera_M_contig90423.20962.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90423.20962.1
Unique NamemRNA_M-pyrifera_M_contig90423.20962.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90423.20962.1 vs. uniprot
Match: UPI00193A88B7 (YegP family protein n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=UPI00193A88B7)

HSP 1 Score: 56.2 bits (134), Expect = 7.760e-9
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    7 MSYPRFEIKRSTSVTQPFYFVLKAVNTETILTSETYTSKQGCENGITSV 153
            M  P+FEIK ST+    FYF LKA N E ILTS+ YTSKQGC++G+ SV
Sbjct:    1 MGQPKFEIKNSTN--DKFYFNLKAGNGEPILTSQMYTSKQGCKSGVNSV 47          
BLAST of mRNA_M-pyrifera_M_contig90423.20962.1 vs. uniprot
Match: A0A1J6XEK5_9MICO (DUF1508 domain-containing protein n=1 Tax=Microbacterium sp. AR7-10 TaxID=1891970 RepID=A0A1J6XEK5_9MICO)

HSP 1 Score: 54.7 bits (130), Expect = 9.410e-9
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1
Query:   25 EIKRSTSVTQPFYFVLKAVNTETILTSETYTSKQGCENGITSV 153
            ++KRSTS +QPFYF + A N +T++TSETYTSKQG  NG+ S+
Sbjct:    5 KLKRSTSASQPFYFTVVAGNGQTLVTSETYTSKQGAVNGMESL 47          
BLAST of mRNA_M-pyrifera_M_contig90423.20962.1 vs. uniprot
Match: UPI001B3A7015 (DUF1508 domain-containing protein n=1 Tax=Aquimarina sp. MMG016 TaxID=2822690 RepID=UPI001B3A7015)

HSP 1 Score: 52.8 bits (125), Expect = 5.320e-8
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    7 MSYPRFEIKRSTSVTQPFYFVLKAVNTETILTSETYTSKQGCENGITSV 153
            M+ P+FE+KRS++    +YF L A N + I TSE YTSKQ CENGI SV
Sbjct:    1 MANPKFELKRSSN--DQYYFTLHAGNGKVIATSEMYTSKQACENGIDSV 47          
BLAST of mRNA_M-pyrifera_M_contig90423.20962.1 vs. uniprot
Match: A6LT43_CLOB8 (DUF1508 domain-containing protein n=2 Tax=Clostridium beijerinckii TaxID=1520 RepID=A6LT43_CLOB8)

HSP 1 Score: 52.8 bits (125), Expect = 6.560e-8
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 EIMSYPRFEIKRSTSVTQPFYFVLKAVNTETILTSETYTSKQGCENGITSV 153
            E++   RFEIK+S++    +YFVLKA N + IL SETYTSKQ C N I S+
Sbjct:    8 EVLEMARFEIKKSSN--DQYYFVLKANNGQVILQSETYTSKQNCNNCIKSI 56          
BLAST of mRNA_M-pyrifera_M_contig90423.20962.1 vs. uniprot
Match: A0A5B1BEN8_9FLAO (DUF1508 domain-containing protein n=1 Tax=Aquimarina sp. RZ0 TaxID=2607730 RepID=A0A5B1BEN8_9FLAO)

HSP 1 Score: 53.5 bits (127), Expect = 8.990e-8
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 1
Query:    7 MSYPRFEIKRSTSVTQPFYFVLKAVNTETILTSETYTSKQGCENGITSV 153
            MS P+F+IK S++    F+F L A+N + ILTSE YT+KQGC+ GITSV
Sbjct:    1 MSNPKFQIKESSN--DQFFFNLHALNGQVILTSELYTTKQGCKGGITSV 47          
BLAST of mRNA_M-pyrifera_M_contig90423.20962.1 vs. uniprot
Match: UPI001E585B0A (YegP family protein n=1 Tax=Fictibacillus sp. 5RED26 TaxID=2745876 RepID=UPI001E585B0A)

HSP 1 Score: 52.8 bits (125), Expect = 1.620e-7
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   19 RFEIKRSTSVTQPFYFVLKAVNTETILTSETYTSKQGCENGITSV 153
            RFEIKRS +    ++FV KAVN ETI+TSE YT+KQ C NG+ SV
Sbjct:    4 RFEIKRSLNY--QYFFVFKAVNGETIITSEMYTTKQNCLNGVDSV 46          
BLAST of mRNA_M-pyrifera_M_contig90423.20962.1 vs. uniprot
Match: UPI000716F274 (YegP family protein n=1 Tax=Solibacillus cecembensis TaxID=459347 RepID=UPI000716F274)

HSP 1 Score: 50.8 bits (120), Expect = 3.530e-7
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    7 MSYPRFEIKRSTSVTQPFYFVLKAVNTETILTSETYTSKQGCENGITSV 153
            +S PRF I +S      FYFVLKA N + I  SETYT+KQ C+NGI+SV
Sbjct:    7 ISKPRFVISKSKD--GQFYFVLKAPNGQVIAQSETYTTKQSCQNGISSV 53          
BLAST of mRNA_M-pyrifera_M_contig90423.20962.1 vs. uniprot
Match: UPI0006BA2628 (YegP family protein n=1 Tax=Citrobacter sp. CtB7.12 TaxID=1696093 RepID=UPI0006BA2628)

HSP 1 Score: 49.3 bits (116), Expect = 1.310e-6
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   22 FEIKRST-SVTQPFYFVLKAVNTETILTSETYTSKQGCENGITSV 153
            F IK+S  + +QP+YF+LKA N ETI TSE Y+SK+ C+ GI SV
Sbjct:    4 FVIKKSEKNNSQPYYFLLKAANHETIATSEMYSSKEACKKGIASV 48          
BLAST of mRNA_M-pyrifera_M_contig90423.20962.1 vs. uniprot
Match: A0A1V2BCP3_9BACT (Uncharacterized protein n=1 Tax=[Flexibacter] sp. ATCC 35208 TaxID=1936242 RepID=A0A1V2BCP3_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 3.590e-6
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    7 MSYPRFEIKRSTSVTQPFYFVLKAVNTETILTSETYTSKQGCENGITSV 153
            M+ P+F++ +S+     FYF LKA N++TIL+SE Y SKQG ENGI SV
Sbjct:    1 MANPKFDLFKSSG---EFYFHLKAENSQTILSSEGYISKQGAENGIKSV 46          
BLAST of mRNA_M-pyrifera_M_contig90423.20962.1 vs. uniprot
Match: A0A5C8LZ90_9FLAO (DUF1508 domain-containing protein n=1 Tax=Mesonia sp. K4-1 TaxID=2602760 RepID=A0A5C8LZ90_9FLAO)

HSP 1 Score: 48.9 bits (115), Expect = 4.980e-6
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1
Query:   58 FYFVLKAVNTETILTSETYTSKQGCENGITSV 153
            FYF L+A N+E ILTSE YTSKQGC NGI SV
Sbjct:   14 FYFTLRAANSEIILTSEGYTSKQGCINGINSV 45          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90423.20962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00193A88B77.760e-961.22YegP family protein n=2 Tax=Flavobacteriaceae TaxI... [more]
A0A1J6XEK5_9MICO9.410e-960.47DUF1508 domain-containing protein n=1 Tax=Microbac... [more]
UPI001B3A70155.320e-857.14DUF1508 domain-containing protein n=1 Tax=Aquimari... [more]
A6LT43_CLOB86.560e-854.90DUF1508 domain-containing protein n=2 Tax=Clostrid... [more]
A0A5B1BEN8_9FLAO8.990e-857.14DUF1508 domain-containing protein n=1 Tax=Aquimari... [more]
UPI001E585B0A1.620e-762.22YegP family protein n=1 Tax=Fictibacillus sp. 5RED... [more]
UPI000716F2743.530e-757.14YegP family protein n=1 Tax=Solibacillus cecembens... [more]
UPI0006BA26281.310e-657.78YegP family protein n=1 Tax=Citrobacter sp. CtB7.1... [more]
A0A1V2BCP3_9BACT3.590e-655.10Uncharacterized protein n=1 Tax=[Flexibacter] sp. ... [more]
A0A5C8LZ90_9FLAO4.980e-675.00DUF1508 domain-containing protein n=1 Tax=Mesonia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90423contigM-pyrifera_M_contig90423:1..153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size147
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.0825062-CDS-M-pyrifera_M_contig90423:0..1471622816816.0825062-CDS-M-pyrifera_M_contig90423:0..147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90423 1..147 -
1692278195.2217143-CDS-M-pyrifera_M_contig90423:0..1471692278195.2217143-CDS-M-pyrifera_M_contig90423:0..147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90423 1..147 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816816.1002188-UTR-M-pyrifera_M_contig90423:147..1531622816816.1002188-UTR-M-pyrifera_M_contig90423:147..153Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90423 148..153 -
1692278195.2343037-UTR-M-pyrifera_M_contig90423:147..1531692278195.2343037-UTR-M-pyrifera_M_contig90423:147..153Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90423 148..153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90423.20962.1prot_M-pyrifera_M_contig90423.20962.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90423 1..147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90423.20962.1

>prot_M-pyrifera_M_contig90423.20962.1 ID=prot_M-pyrifera_M_contig90423.20962.1|Name=mRNA_M-pyrifera_M_contig90423.20962.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
MSYPRFEIKRSTSVTQPFYFVLKAVNTETILTSETYTSKQGCENGITSV
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mRNA from alignment at M-pyrifera_M_contig90423:1..153-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90423.20962.1 ID=mRNA_M-pyrifera_M_contig90423.20962.1|Name=mRNA_M-pyrifera_M_contig90423.20962.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig90423:1..153- (Macrocystis pyrifera P11B4 male)
GAAATTATGAGTTATCCAAGATTTGAAATCAAACGAAGTACTTCAGTCAC ACAACCCTTTTATTTTGTGCTCAAAGCAGTAAACACAGAAACCATACTTA CTAGTGAAACCTATACTTCCAAACAAGGGTGTGAGAATGGAATAACTTCA GTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90423:1..153-

>mRNA_M-pyrifera_M_contig90423.20962.1 ID=mRNA_M-pyrifera_M_contig90423.20962.1|Name=mRNA_M-pyrifera_M_contig90423.20962.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig90423:1..153- (Macrocystis pyrifera P11B4 male)
ATGAGTTATCCAAGATTTGAAATCAAACGAAGTACTTCAGTCACACAACC
CTTTTATTTTGTGCTCAAAGCAGTAAACACAGAAACCATACTTACTAGTG
AAACCTATACTTCCAAACAAGGGTGTGAGAATGGAATAACTTCAGTAATG
AGTTATCCAAGATTTGAAATCAAACGAAGTACTTCAGTCACACAACCCTT
TTATTTTGTGCTCAAAGCAGTAAACACAGAAACCATACTTACTAGTGAAA
CCTATACTTCCAAACAAGGGTGTGAGAATGGAATAACTTCAGTA
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