mRNA_M-pyrifera_M_contig9039.20957.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9039.20957.1
Unique NamemRNA_M-pyrifera_M_contig9039.20957.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig9039.20957.1 vs. uniprot
Match: D7G5I4_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5I4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.140e-29
Identity = 60/68 (88.24%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:    1 FNDLDLAAVARSFCLLRLPKIAELSDPSIAQSFEKDKTVDFTAIKYADKLREKARQKQLVKQDEENKQ 204
            FNDLDLAAVAR+FCLLRLPKIAELS+P++A+SFEK+KTVDFTAIKYADK REKARQKQLV+QDEENKQ
Sbjct:  403 FNDLDLAAVARAFCLLRLPKIAELSNPAVAESFEKEKTVDFTAIKYADKAREKARQKQLVRQDEENKQ 470
[Close]
BLAST of mRNA_M-pyrifera_M_contig9039.20957.1 vs. uniprot
Match: A0A196S572_BLAHN (DEAD/DEAH box RNA helicase n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S572_BLAHN)

HSP 1 Score: 53.9 bits (128), Expect = 9.560e-7
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 FNDLDLAAVARSFCLLRLPKIAELSDPSIAQSFEKDKTVDFTAIKYADKLREKARQKQLVKQD 189
            F D+D+AA+ARSF L+RLP+++EL    +A  FE D  VD  +I Y +  REKARQ++L K++
Sbjct:  443 FEDVDVAALARSFALVRLPRVSELKGRKVA--FE-DMDVDVRSIPYLNAEREKARQERLKKEE 502
[Close]
BLAST of mRNA_M-pyrifera_M_contig9039.20957.1 vs. uniprot
Match: A0A673CHJ7_9TELE (DEAD-box helicase 55 n=6 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673CHJ7_9TELE)

HSP 1 Score: 53.5 bits (127), Expect = 1.310e-6
Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    4 NDLDLAAVARSFCLLRLPKIAELSDPSIAQSFEKDKTVDFTAIKYADKLREKARQKQLVKQ 186
             DLD AA+AR F LLRLPK+ EL   ++    E +  VD   I+Y DK REK RQK L +Q
Sbjct:  449 KDLDFAALARGFALLRLPKMPELRGKTLPDFIETN--VDTNTIRYKDKNREKQRQKMLAEQ 507
[Close]
BLAST of mRNA_M-pyrifera_M_contig9039.20957.1 vs. uniprot
Match: A0A4P9XW60_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XW60_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 2.450e-6
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    4 NDLDLAAVARSFCLLRLPKIAELSDPSIAQSFEKDKTVDFTAIKYADKLREKARQKQL 177
             DLD+   A  + LL+LPK+ E+ D       E D  VD  +IKYADK+REKARQK+L
Sbjct:  449 KDLDICRAAMGYALLKLPKMPEMKDRDATAFIEYDVNVD--SIKYADKVREKARQKRL 504
[Close]
BLAST of mRNA_M-pyrifera_M_contig9039.20957.1 vs. uniprot
Match: A0A667YG26_9TELE (RNA helicase n=6 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667YG26_9TELE)

HSP 1 Score: 52.4 bits (124), Expect = 3.340e-6
Identity = 31/61 (50.82%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    4 NDLDLAAVARSFCLLRLPKIAELSDPSIAQSFEKDKTVDFTAIKYADKLREKARQKQLVKQ 186
             DLD AA+AR F LLR+PK+ EL   +     E   TVD   I+Y DK REK RQK L +Q
Sbjct:  422 KDLDFAALARGFALLRMPKMPELRGKTFPDFTET--TVDTDTIRYKDKNREKQRQKMLAEQ 480
[Close]
BLAST of mRNA_M-pyrifera_M_contig9039.20957.1 vs. uniprot
Match: A0A166BNY0_EXIGL (DEAD-domain-containing protein n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A166BNY0_EXIGL)

HSP 1 Score: 52.4 bits (124), Expect = 3.350e-6
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    4 NDLDLAAVARSFCLLRLPKIAELSDPSIAQSFEKDKTVDFTAIKYADKLREKARQKQL 177
             DLDL  VARSF LLRLPK+ EL +     S   D  +D+    YADK REKAR ++L
Sbjct:  487 KDLDLVGVARSFGLLRLPKMPELKERPEGHSTWLDVDIDWDTYAYADKTREKARLQEL 544
[Close]
BLAST of mRNA_M-pyrifera_M_contig9039.20957.1 vs. uniprot
Match: UPI001B7E15DE (ATP-dependent RNA helicase DDX55 isoform X1 n=4 Tax=Galeoidea TaxID=119195 RepID=UPI001B7E15DE)

HSP 1 Score: 51.2 bits (121), Expect = 8.550e-6
Identity = 30/63 (47.62%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    4 NDLDLAAVARSFCLLRLPKIAELSDPSIAQSFEKDKTVDFTAIKYADKLREKARQKQLVKQDE 192
             DLD AAVAR F LL+LPK+ EL   S      ++  +D  +I+Y DK REK RQK+L +Q +
Sbjct:  442 KDLDFAAVARGFGLLKLPKMPELRGKSFPGFIPEN--IDTNSIRYKDKNREKQRQKKLTEQQQ 502
[Close]
BLAST of mRNA_M-pyrifera_M_contig9039.20957.1 vs. uniprot
Match: UPI001C4AA315 (ATP-dependent RNA helicase DDX55 n=1 Tax=Thunnus maccoyii TaxID=8240 RepID=UPI001C4AA315)

HSP 1 Score: 50.8 bits (120), Expect = 1.170e-5
Identity = 32/62 (51.61%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    4 NDLDLAAVARSFCLLRLPKIAELSD---PSIAQSFEKDKTVDFTAIKYADKLREKARQKQLV 180
             DLD AA+AR F LLRLPK+ EL     P  AQ+     TVD   I+Y DK REK R+K L 
Sbjct:  444 KDLDFAALARGFALLRLPKMPELRGKTFPDFAQT-----TVDTETIRYKDKHREKQRRKMLA 500
[Close]
BLAST of mRNA_M-pyrifera_M_contig9039.20957.1 vs. uniprot
Match: A0A401SZC7_CHIPU (RNA helicase n=2 Tax=Chiloscyllium TaxID=34767 RepID=A0A401SZC7_CHIPU)

HSP 1 Score: 50.4 bits (119), Expect = 1.590e-5
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:    4 NDLDLAAVARSFCLLRLPKIAELSDPSIAQSFEKDKTVDFTAIKYADKLREKARQKQLVKQDEENKQ 204
             DLD AAVAR F LL+LP + EL   S      ++  +D  +I+Y DK REK RQK L KQ ++ +Q
Sbjct:  378 KDLDFAAVARGFGLLKLPTMPELRGKSFPDFIPEN--IDTNSIRYRDKNREKQRQKILAKQQQDRQQ 442
[Close]
BLAST of mRNA_M-pyrifera_M_contig9039.20957.1 vs. uniprot
Match: A0A4P9YUE0_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YUE0_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 1.590e-5
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    4 NDLDLAAVARSFCLLRLPKIAELSDPSIAQSFEKDKTVDFTAIKYADKLREKARQKQL 177
             DL+L  +A S+ LL++PK+ EL D   ++    D  VD  AI YADK+REKARQK++
Sbjct:  343 KDLNLCQMAMSYALLKMPKMPELKDKDTSEFVAFDVNVD--AIPYADKVREKARQKRI 398
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9039.20957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5I4_ECTSI2.140e-2988.24DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A196S572_BLAHN9.560e-749.21DEAD/DEAH box RNA helicase n=1 Tax=Blastocystis sp... [more]
A0A673CHJ7_9TELE1.310e-650.82DEAD-box helicase 55 n=6 Tax=Sphaeramia orbiculari... [more]
A0A4P9XW60_9FUNG2.450e-650.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A667YG26_9TELE3.340e-650.82RNA helicase n=6 Tax=Myripristis murdjan TaxID=586... [more]
A0A166BNY0_EXIGL3.350e-651.72DEAD-domain-containing protein n=1 Tax=Exidia glan... [more]
UPI001B7E15DE8.550e-647.62ATP-dependent RNA helicase DDX55 isoform X1 n=4 Ta... [more]
UPI001C4AA3151.170e-551.61ATP-dependent RNA helicase DDX55 n=1 Tax=Thunnus m... [more]
A0A401SZC7_CHIPU1.590e-546.27RNA helicase n=2 Tax=Chiloscyllium TaxID=34767 Rep... [more]
A0A4P9YUE0_9FUNG1.590e-548.28P-loop containing nucleoside triphosphate hydrolas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9039contigM-pyrifera_M_contig9039:482..2376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.5e-24
Seed eggNOG ortholog2880.D7G5I4
Preferred nameDDX55
KEGG koko:K14809,ko:K16833
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003727,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008187,GO:0008266,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902626,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0345@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03009,ko03036
Exons2
Model size205
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816815.7749927-CDS-M-pyrifera_M_contig9039:481..5511622816815.7749927-CDS-M-pyrifera_M_contig9039:481..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9039 482..551 -
1692278195.001878-CDS-M-pyrifera_M_contig9039:481..5511692278195.001878-CDS-M-pyrifera_M_contig9039:481..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9039 482..551 -
1622816815.7863655-CDS-M-pyrifera_M_contig9039:2242..23761622816815.7863655-CDS-M-pyrifera_M_contig9039:2242..2376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9039 2243..2376 -
1692278195.0156937-CDS-M-pyrifera_M_contig9039:2242..23761692278195.0156937-CDS-M-pyrifera_M_contig9039:2242..2376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9039 2243..2376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9039.20957.1prot_M-pyrifera_M_contig9039.20957.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9039 482..2376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9039.20957.1

>prot_M-pyrifera_M_contig9039.20957.1 ID=prot_M-pyrifera_M_contig9039.20957.1|Name=mRNA_M-pyrifera_M_contig9039.20957.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
FNDLDLAAVARSFCLLRLPKIAELSDPSIAQSFEKDKTVDFTAIKYADKL
REKARQKQLVKQDEENKQ
back to top

mRNA from alignment at M-pyrifera_M_contig9039:482..2376-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9039.20957.1 ID=mRNA_M-pyrifera_M_contig9039.20957.1|Name=mRNA_M-pyrifera_M_contig9039.20957.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1895bp|location=Sequence derived from alignment at M-pyrifera_M_contig9039:482..2376- (Macrocystis pyrifera P11B4 male)
TTCAACGATCTCGACCTTGCGGCGGTGGCGCGGTCGTTCTGCCTCCTCCG
GCTGCCAAAGATCGCCGAGCTGAGCGACCCAAGCATAGCGCAGAGCTTCG
AGAAGGATAAAACGGTCGACTTCACGGCTATCAAGTGAGTGGCAGGAGCA
TACGAATAACATGAACACATACAGCCGGCGTCCCCGGTGGCTTGATAACC
GCGTGCCTACTAAGATCAATTTCGTGGGTTCAAGTCTCACCGAGCGCATA
CTCGTAAGGACATTTTCTTGCATACAAGTTGATTAGCGGAAAGCGCGAAA
GCGTGAGTTAGCTGCATTCGATGAAAATCGAAGAGCAGTGGGAATGCTGA
ACCCTATGCGCGATAAAAATGAAGGCACGTACCGGGGGGAAGACGGGACG
ACACCTGTGATCACGGCTTGTCCAGAGAAAGACCGCTGAGGGTAAAACCT
CCTACGAGTGGGCTGGAAAGTAAAAGTGCTGACATGAACGTGGATATTTG
GAGATGGTTATGAAAAGTTTAATATAGATAGTATTATTGTATAAGAACAT
GACCTATCAAGAGCATGGTATTCATATCATGAACAGGGTACCATGAACTA
TGGTAGCGTGAACATAGTATCACAATGTCCATGAAAACATGGTATCACGG
AACATGAGCGCGGCGTATGAGCACGCGAATATCACACCAAGGAGCATGGA
AACATGTACCGAGGGAATATTAACATGATAACATGACATATCATGAACAT
GGTATGCAACCTCGAGCATGATACCAGGGGTATCATGTCGTGAACGTGAC
TGCATGGACATGAGCGCATGCCTATGAGCAGGGACACAACGGTCAAGCAA
CTTGAGTTGTCCTCCGCCTCCGCGTGACCACTGCTGTCGTGTGCCGAACG
CCTGTCTCGTAGCATGTTACTACACTGTTTTTTGTGTAGGGGCGGTCAGT
CAAGGGGTCAAACCGCGGTCTCGTAGCATCTTACTATAGTGGCTTTAGTG
TAGGGGGCGGTCAGTCAAGGGGTCAAACCGCGGTCTCCTGGCATATTTAT
ACTGTTTTAGTGTAGGGGGCGGTCGGTCAAGGGGTCAAACAACGGTCTCG
GAGCATGTTACTATACTATTTTAATGTAGGGAGGGTGAGTCAAGGCGTCA
AACTGCGATCTCGTAGTATTTTATGTTGTATGTAGTGTAGAAAAGCGGCC
ATTCGATGCGTCAAAGTGCGTTGTTCTAGAATCGTATTATACTGGTTTTA
GTGTTGGAGGCCGTCAGTCAAGAGGTCAAACTGGGGTCTCCTAGCTGAAG
AGGATAGGTTTTCAGGAAGAGGACAAAAGAGTGAGAGCGCTCCGCGACTG
CTGTAGGTTCGATATGCAAAGAGCTCGGTCTCTCTCGGGCCGGCGTGTTT
TCCGCGTTTCCGTCTGCCTCTAGACTCGGGAGGCAGACGGTCGGTTCCCA
CTCCATGATGTAGATCTTTTGGAAGCAGATATGCTCCTCGTCTTTGTGAT
CTACTGTATATATCTAGCTCATGCTGCCGGGTGGGAGCCGTATCGCCTGC
ACGATGTAGCACATATTTCCTCGGGTTTGATCTTTACTTACTTACTTATA
TACATACAGATCCTGCACAGTCTCTCACAACAGATGGTGATGGACTCGAT
GATCTACAGTAGACAGATAGATCATGATCTATCTCTCTGCACGCAAGACA
GGCGAAAACGCCAACGAGGGCAGAAGCCGTAAAAAACTACCCTTGGCCGA
TTGCACGACTGTGTGTGTCTTTGTTTTCGCCTTCTTTTTTTGCATTCCTT
TTTCTTTTGCTGCTGGACCGAACAGGTACGCTGATAAGCTTCGCGAGAAG
GCCAGGCAGAAACAGCTGGTCAAGCAAGACGAGGAAAACAAGCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig9039:482..2376-

>mRNA_M-pyrifera_M_contig9039.20957.1 ID=mRNA_M-pyrifera_M_contig9039.20957.1|Name=mRNA_M-pyrifera_M_contig9039.20957.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig9039:482..2376- (Macrocystis pyrifera P11B4 male)
TTCAACGATCTCGACCTTGCGGCGGTGGCGCGGTCGTTCTGCCTCCTCCG
GCTGCCAAAGATCGCCGAGCTGAGCGACCCAAGCATAGCGCAGAGCTTCG
AGAAGGATAAAACGGTCGACTTCACGGCTATCAATTCAACGATCTCGACC
TTGCGGCGGTGGCGCGGTCGTTCTGCCTCCTCCGGCTGCCAAAGATCGCC
GAGCTGAGCGACCCAAGCATAGCGCAGAGCTTCGAGAAGGATAAAACGGT
CGACTTCACGGCTATCAAGTACGCTGATAAGCTTCGCGAGAAGGCCAGGC
AGAAACAGCTGGTCAAGCAAGACGAGGAAAACAAGCAGGTACGCTGATAA
GCTTCGCGAGAAGGCCAGGCAGAAACAGCTGGTCAAGCAAGACGAGGAAA
ACAAGCAG
back to top