mRNA_M-pyrifera_M_contig90380.20956.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90380.20956.1
Unique NamemRNA_M-pyrifera_M_contig90380.20956.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90380.20956.1 vs. uniprot
Match: A0A5A8DX42_CAFRO (40S ribosomal protein S3a n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8DX42_CAFRO)

HSP 1 Score: 143 bits (361), Expect = 2.800e-40
Identity = 70/102 (68.63%), Postives = 86/102 (84.31%), Query Frame = 1 
Query:    4 VDPFTRKEWYGVRVPALFEKRDVGRTPINKTAGKRIASEDIKGRIFEISLGDLNEDSEEKAFRKMRFIVEDVRGKDVLLNFHGMDFTRDKLASLLRKWQSLI 309
            VDPFTRKEWY V+VP+LF  R  G+TPIN+TAG++IASE++KGR+FEISLGDLN+ S+   FRKMR +VE+V+GKD L NF+GMD TRDKLASL RK Q+ I
Sbjct:   42 VDPFTRKEWYDVKVPSLFTNRVAGKTPINRTAGQKIASEEMKGRVFEISLGDLNKSSDAD-FRKMRLVVEEVQGKDALCNFYGMDTTRDKLASLFRKCQTTI 142
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BLAST of mRNA_M-pyrifera_M_contig90380.20956.1 vs. uniprot
Match: A0A0N8EFA4_9CRUS (40S ribosomal protein S3a n=4 Tax=Eukaryota TaxID=2759 RepID=A0A0N8EFA4_9CRUS)

HSP 1 Score: 141 bits (356), Expect = 8.610e-40
Identity = 62/103 (60.19%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    1 SVDPFTRKEWYGVRVPALFEKRDVGRTPINKTAGKRIASEDIKGRIFEISLGDLNEDSEEKAFRKMRFIVEDVRGKDVLLNFHGMDFTRDKLASLLRKWQSLI 309
            +VDPFTRK+WY ++ PA+F +R+ G+T +N+TAG +IASE +KGR+FE+SLGDLN+D EE++FRK++   E+++G  ++  FHGMDFTRDKL SL+RKWQSLI
Sbjct:   20 AVDPFTRKDWYDLKAPAIFSERNFGKTLVNRTAGTKIASEGLKGRVFEVSLGDLNKD-EEQSFRKIKLCAEEIQGTQIVTGFHGMDFTRDKLCSLIRKWQSLI 121
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BLAST of mRNA_M-pyrifera_M_contig90380.20956.1 vs. uniprot
Match: A0A812YDV0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YDV0_9DINO)

HSP 1 Score: 140 bits (352), Expect = 1.790e-39
Identity = 64/102 (62.75%), Postives = 84/102 (82.35%), Query Frame = 1 
Query:    4 VDPFTRKEWYGVRVPALFEKRDVGRTPINKTAGKRIASEDIKGRIFEISLGDLNEDSEEKAFRKMRFIVEDVRGKDVLLNFHGMDFTRDKLASLLRKWQSLI 309
            VDPFTRKEWY ++VPA+F+ R  G+TP+ KT G +IASE +KGR+FEISLGDLN+ +E+  FRK+R + E+V+G  VL NF+GM FTRDKL SL+RK+Q+LI
Sbjct:   21 VDPFTRKEWYDIKVPAIFQNRLCGKTPVTKTIGTKIASEQLKGRVFEISLGDLNKQAEDAEFRKIRLVCEEVQGSAVLCNFYGMTFTRDKLCSLVRKFQTLI 122
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BLAST of mRNA_M-pyrifera_M_contig90380.20956.1 vs. uniprot
Match: A0A485L1N2_9STRA (40S ribosomal protein S3a n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485L1N2_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.430e-39
Identity = 61/103 (59.22%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    1 SVDPFTRKEWYGVRVPALFEKRDVGRTPINKTAGKRIASEDIKGRIFEISLGDLNEDSEEKAFRKMRFIVEDVRGKDVLLNFHGMDFTRDKLASLLRKWQSLI 309
            +VDPFTRK+WY +RVP +F++R +G+T +N+T+G +IASE +KGR+ E+ L DLN+D E+++FRK+R  VEDV+G  V+ NFHGMDFTRDK+ SL++KWQ+LI
Sbjct:   20 AVDPFTRKDWYDIRVPGIFQQRTIGKTLVNRTSGTKIASEGLKGRVIEVCLADLNKD-EDQSFRKVRLAVEDVQGTQVITNFHGMDFTRDKVCSLIKKWQTLI 121
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BLAST of mRNA_M-pyrifera_M_contig90380.20956.1 vs. uniprot
Match: A0A0L0FUS5_9EUKA (40S ribosomal protein S3a n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FUS5_9EUKA)

HSP 1 Score: 139 bits (351), Expect = 4.620e-39
Identity = 61/103 (59.22%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 SVDPFTRKEWYGVRVPALFEKRDVGRTPINKTAGKRIASEDIKGRIFEISLGDLNEDSEEKAFRKMRFIVEDVRGKDVLLNFHGMDFTRDKLASLLRKWQSLI 309
            +VDPF++K+WY ++ P++F KR+VG+T +N+T G +IAS+ + GR+FE+SL DLN+D E++A+RKMR +VEDV+GK+V+ NFHGMDFT DKL SL++KW SLI
Sbjct:   20 TVDPFSKKDWYDIKAPSVFTKRNVGKTLVNRTQGTKIASDGLMGRVFEVSLADLNDD-EDQAYRKMRLVVEDVQGKNVITNFHGMDFTTDKLHSLVKKWHSLI 121
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BLAST of mRNA_M-pyrifera_M_contig90380.20956.1 vs. uniprot
Match: RS3A_ARTSF (40S ribosomal protein S3a n=1 Tax=Artemia franciscana TaxID=6661 RepID=RS3A_ARTSF)

HSP 1 Score: 138 bits (348), Expect = 1.640e-38
Identity = 63/103 (61.17%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:    4 VDPFTRKEWYGVRVPALFEKRDVGRTPINKTAGKRIASEDIKGRIFEISLGDLNEDSE-EKAFRKMRFIVEDVRGKDVLLNFHGMDFTRDKLASLLRKWQSLI 309
            VDPFTRK+WY V+ P+LF  RD+G+T +N+TAG +IAS+ +KGR+FE+SL DL  +SE E++FRK R I E+V+G+ +L NFHGMDFT DKL SL++KWQ+LI
Sbjct:   22 VDPFTRKDWYDVKAPSLFTNRDIGKTLVNRTAGTKIASDSLKGRVFEVSLADLQGESEAERSFRKFRLIAEEVQGRYLLTNFHGMDFTTDKLRSLVKKWQTLI 124
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BLAST of mRNA_M-pyrifera_M_contig90380.20956.1 vs. uniprot
Match: A0A0B6YSH2_9EUPU (40S ribosomal protein S3a n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YSH2_9EUPU)

HSP 1 Score: 138 bits (347), Expect = 1.760e-38
Identity = 64/102 (62.75%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:    4 VDPFTRKEWYGVRVPALFEKRDVGRTPINKTAGKRIASEDIKGRIFEISLGDLNEDSEEKAFRKMRFIVEDVRGKDVLLNFHGMDFTRDKLASLLRKWQSLI 309
            VDPFTRKEWY ++ P +F  R VG+T INKT G +IASE +KGR+FE+SLGDLN+   E  FRK R I EDV+G++VL NFHGM FTRDKL+S+++KW +LI
Sbjct:   19 VDPFTRKEWYDIKAPGMFTTRQVGKTFINKTQGTKIASEGLKGRVFEVSLGDLNKS--ESTFRKFRLICEDVQGRNVLTNFHGMSFTRDKLSSIVKKWHTLI 118
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BLAST of mRNA_M-pyrifera_M_contig90380.20956.1 vs. uniprot
Match: M9V9B3_9BILA (Small subunit ribosomal protein 1 (Fragment) n=2 Tax=Pristionchus TaxID=54125 RepID=M9V9B3_9BILA)

HSP 1 Score: 136 bits (342), Expect = 2.340e-38
Identity = 60/103 (58.25%), Postives = 81/103 (78.64%), Query Frame = 1 
Query:    1 SVDPFTRKEWYGVRVPALFEKRDVGRTPINKTAGKRIASEDIKGRIFEISLGDLNEDSEEKAFRKMRFIVEDVRGKDVLLNFHGMDFTRDKLASLLRKWQSLI 309
            +VDPFTRKEWY ++ P++F  R VG+T +N+T G +IAS+ +KGR+FE+SLGDLN    E  FRK R I EDV+GK+VL NFHGM FTRDKL S+++KW +++
Sbjct:   12 AVDPFTRKEWYDIKAPSMFTNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLGDLN--GSESDFRKFRLICEDVQGKNVLTNFHGMSFTRDKLCSIVKKWHTMV 112
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BLAST of mRNA_M-pyrifera_M_contig90380.20956.1 vs. uniprot
Match: A0A090MYY9_STRRB (40S ribosomal protein S3a n=5 Tax=Strongyloididae TaxID=6246 RepID=A0A090MYY9_STRRB)

HSP 1 Score: 137 bits (345), Expect = 3.510e-38
Identity = 63/102 (61.76%), Postives = 82/102 (80.39%), Query Frame = 1 
Query:    4 VDPFTRKEWYGVRVPALFEKRDVGRTPINKTAGKRIASEDIKGRIFEISLGDLNEDSEEKAFRKMRFIVEDVRGKDVLLNFHGMDFTRDKLASLLRKWQSLI 309
            +DPFTRKEWY ++ P++F  R VG+T INKT G +IASE +KGR+FE+SLGDLN+   E  FRK R I EDV+G++VL NFHGM+FTRDKL S+++KW +LI
Sbjct:   19 IDPFTRKEWYDIKAPSMFTTRQVGKTFINKTQGTKIASEGLKGRVFEVSLGDLNKS--ESDFRKFRLICEDVQGRNVLTNFHGMNFTRDKLCSIVKKWHTLI 118
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BLAST of mRNA_M-pyrifera_M_contig90380.20956.1 vs. uniprot
Match: A0A1Y3EU80_9BILA (40S ribosomal protein S3a n=1 Tax=Trichinella nativa TaxID=6335 RepID=A0A1Y3EU80_9BILA)

HSP 1 Score: 136 bits (342), Expect = 4.650e-38
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    4 VDPFTRKEWYGVRVPALFEKRDVGRTPINKTAGKRIASEDIKGRIFEISLGDLNEDSEEKAFRKMRFIVEDVRGKDVLLNFHGMDFTRDKLASLLRKWQSLI 309
            VDPFTRKEWY V+ PALF  RD+G+T +N+T G +IASE +KGR++E+SLGDLN D  E  FRK R I E V+G   L NFHGM+FTRDKL SL++KWQ+LI
Sbjct:   22 VDPFTRKEWYNVKAPALFMHRDIGQTCVNRTQGTKIASEGLKGRVYEVSLGDLNND--EADFRKFRLICEYVQGDTCLTNFHGMNFTRDKLCSLVKKWQTLI 121
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90380.20956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DX42_CAFRO2.800e-4068.6340S ribosomal protein S3a n=3 Tax=Sar TaxID=269873... [more]
A0A0N8EFA4_9CRUS8.610e-4060.1940S ribosomal protein S3a n=4 Tax=Eukaryota TaxID=... [more]
A0A812YDV0_9DINO1.790e-3962.75Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A485L1N2_9STRA2.430e-3959.2240S ribosomal protein S3a n=11 Tax=Saprolegniaceae... [more]
A0A0L0FUS5_9EUKA4.620e-3959.2240S ribosomal protein S3a n=1 Tax=Sphaeroforma arc... [more]
RS3A_ARTSF1.640e-3861.1740S ribosomal protein S3a n=1 Tax=Artemia francisc... [more]
A0A0B6YSH2_9EUPU1.760e-3862.7540S ribosomal protein S3a n=1 Tax=Arion vulgaris T... [more]
M9V9B3_9BILA2.340e-3858.25Small subunit ribosomal protein 1 (Fragment) n=2 T... [more]
A0A090MYY9_STRRB3.510e-3861.7640S ribosomal protein S3a n=5 Tax=Strongyloididae ... [more]
A0A1Y3EU80_9BILA4.650e-3863.7340S ribosomal protein S3a n=1 Tax=Trichinella nati... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90380contigM-pyrifera_M_contig90380:485..793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue8.4e-32
Seed eggNOG ortholog157072.XP_008872125.1
Preferred nameRS3A
KEGG rclassRC00434
KEGG koko:K01807,ko:K02984
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03010,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map03010
KEGG ModuleM00004,M00007,M00165,M00167,M00177,M00179,M00580
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG1890@1,KOG1628@2759
EC5.3.1.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816815.7447016-CDS-M-pyrifera_M_contig90380:484..7931622816815.7447016-CDS-M-pyrifera_M_contig90380:484..793Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90380 485..793 +
1692278194.9871488-CDS-M-pyrifera_M_contig90380:484..7931692278194.9871488-CDS-M-pyrifera_M_contig90380:484..793Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90380 485..793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90380.20956.1prot_M-pyrifera_M_contig90380.20956.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90380 485..793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90380.20956.1

>prot_M-pyrifera_M_contig90380.20956.1 ID=prot_M-pyrifera_M_contig90380.20956.1|Name=mRNA_M-pyrifera_M_contig90380.20956.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
SVDPFTRKEWYGVRVPALFEKRDVGRTPINKTAGKRIASEDIKGRIFEIS
LGDLNEDSEEKAFRKMRFIVEDVRGKDVLLNFHGMDFTRDKLASLLRKWQ
SLI
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mRNA from alignment at M-pyrifera_M_contig90380:485..793+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90380.20956.1 ID=mRNA_M-pyrifera_M_contig90380.20956.1|Name=mRNA_M-pyrifera_M_contig90380.20956.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig90380:485..793+ (Macrocystis pyrifera P11B4 male)
AGCGTTGATCCTTTCACTCGCAAGGAGTGGTATGGCGTTCGGGTGCCAGC
CTTGTTCGAGAAGCGCGATGTTGGGCGTACTCCGATCAACAAGACTGCCG
GGAAGCGCATTGCGTCGGAGGACATCAAGGGCCGCATTTTCGAGATTTCT
CTGGGCGATTTGAACGAGGACAGCGAGGAGAAGGCGTTCCGCAAGATGCG
CTTCATCGTGGAGGACGTTCGCGGCAAGGACGTGTTGCTCAACTTCCACG
GGATGGACTTTACGCGCGACAAGCTGGCGTCGCTGCTGCGCAAGTGGCAG
AGTCTGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90380:485..793+

>mRNA_M-pyrifera_M_contig90380.20956.1 ID=mRNA_M-pyrifera_M_contig90380.20956.1|Name=mRNA_M-pyrifera_M_contig90380.20956.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig90380:485..793+ (Macrocystis pyrifera P11B4 male)
AGCGTTGATCCTTTCACTCGCAAGGAGTGGTATGGCGTTCGGGTGCCAGC
CTTGTTCGAGAAGCGCGATGTTGGGCGTACTCCGATCAACAAGACTGCCG
GGAAGCGCATTGCGTCGGAGGACATCAAGGGCCGCATTTTCGAGATTTCT
CTGGGCGATTTGAACGAGGACAGCGAGGAGAAGGCGTTCCGCAAGATGCG
CTTCATCGTGGAGGACGTTCGCGGCAAGGACGTGTTGCTCAACTTCCACG
GGATGGACTTTACGCGCGACAAGCTGGCGTCGCTGCTGCGCAAGTGGCAG
AGTCTGATCAGCGTTGATCCTTTCACTCGCAAGGAGTGGTATGGCGTTCG
GGTGCCAGCCTTGTTCGAGAAGCGCGATGTTGGGCGTACTCCGATCAACA
AGACTGCCGGGAAGCGCATTGCGTCGGAGGACATCAAGGGCCGCATTTTC
GAGATTTCTCTGGGCGATTTGAACGAGGACAGCGAGGAGAAGGCGTTCCG
CAAGATGCGCTTCATCGTGGAGGACGTTCGCGGCAAGGACGTGTTGCTCA
ACTTCCACGGGATGGACTTTACGCGCGACAAGCTGGCGTCGCTGCTGCGC
AAGTGGCAGAGTCTGATC
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