mRNA_M-pyrifera_M_contig90376.20954.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90376.20954.1
Unique NamemRNA_M-pyrifera_M_contig90376.20954.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90376.20954.1 vs. uniprot
Match: A0A812MXX2_9DINO (PAA1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812MXX2_9DINO)

HSP 1 Score: 94.4 bits (233), Expect = 7.810e-22
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    7 MGYRAVAAGVKEQEATNNLEKKVKAEEMDLTSEDVVTRESIDTLQTVLGADFKPTDVEVVVATPDGVKILAESDIDTHLTAIAEAD 264
            MGY+A AAGVKEQEA NNLEKK+K++    T E+V TR ++DTLQ VLG DFK  D+EV V T     +L ++++D HLTAIAEAD
Sbjct:  156 MGYKAAAAGVKEQEAVNNLEKKIKSDTAPRTREEV-TRATVDTLQAVLGEDFKARDIEVAVVTAKDAIVLDDAEVDAHLTAIAEAD 240          
BLAST of mRNA_M-pyrifera_M_contig90376.20954.1 vs. uniprot
Match: A0A5A8DTC8_CAFRO (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DTC8_CAFRO)

HSP 1 Score: 94.4 bits (233), Expect = 8.280e-22
Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    7 MGYRAVAAGVKEQEATNNLEKKVKAEEMDLTSEDVVTRESIDTLQTVLGADFKPTDVEVVVATPDGVKILAESDIDTHLTAIAEAD 264
            MGY+A AAGVKEQEA NNLEKK+K++    T E+V TR ++DTLQ VLG DFK  D+EV V T     +L ++++D HLTAIAEAD
Sbjct:  159 MGYKAAAAGVKEQEAVNNLEKKIKSDTAPRTREEV-TRATVDTLQAVLGEDFKARDIEVAVVTAKDAIVLDDAEVDAHLTAIAEAD 243          
BLAST of mRNA_M-pyrifera_M_contig90376.20954.1 vs. uniprot
Match: A0A7S3HIL7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIL7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.690e-16
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    4 YMGYRAVAAGVKEQEATNNLEKKVKAEEMDLTSEDVVTRESIDTLQTVLGADFKPTDVEVVVATPD--GVKILAESDIDTHLTAIAEAD 264
            Y GY+A AAG K+QE+ N LEK +K +++ LT  + + +++I  LQ VLG DFKP D+EV V   +  GV  L+E +IDTHLTAIAE D
Sbjct:  141 YYGYKACAAGTKDQESMNALEKIIKKKDLKLTETETI-QQAIGCLQAVLGMDFKPADIEVAVVCKNRHGVIRLSEEEIDTHLTAIAEKD 228          
BLAST of mRNA_M-pyrifera_M_contig90376.20954.1 vs. uniprot
Match: A0A0V0QWW2_PSEPJ (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QWW2_PSEPJ)

HSP 1 Score: 77.0 bits (188), Expect = 3.610e-15
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    4 YMGYRAVAAGVKEQEATNNLEKKVKAEEMDLT-SEDVVTRESIDTLQTVLGADFKPTDVEV-VVATPDGV-KILAESDIDTHLTAIAEAD 264
            Y+GYRAVA+GVKEQE+ N LEK+ K  + +L  S D   + +I TLQ+V+G DFKP+D+E+ +V T D V + L+  +IDTHL AIA  D
Sbjct:  155 YLGYRAVASGVKEQESINYLEKQFKKGDGNLKLSHDETIQMAIQTLQSVIGVDFKPSDIEIGIVTTQDPVFRNLSSQEIDTHLNAIANRD 244          
BLAST of mRNA_M-pyrifera_M_contig90376.20954.1 vs. uniprot
Match: A0A0G4GHR3_9ALVE (PROTEASOME_ALPHA_1 domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GHR3_9ALVE)

HSP 1 Score: 77.0 bits (188), Expect = 3.720e-15
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    1 NYMGYRAVAAGVKEQEATNNLEKKVKAEEMDLTSEDVVTRESIDTLQTVLGADFKPTDVEVVVATPDGVKI--LAESDIDTHLTAIAEAD 264
            +++GY+A A+G KEQEATN LEK V+    +   E V  + +++ LQTVLG DFKP D+EV V T +  K   LA+S+++ HLTAIAE D
Sbjct:  159 HFVGYKACASGAKEQEATNALEKVVRKTAPNNCDETV--QAAVECLQTVLGVDFKPADIEVAVVTAENPKFRRLADSEVEDHLTAIAEKD 246          
BLAST of mRNA_M-pyrifera_M_contig90376.20954.1 vs. uniprot
Match: A0A812DAP7_SEPPH (Proteasome subunit alpha type n=3 Tax=Coleoidea TaxID=6606 RepID=A0A812DAP7_SEPPH)

HSP 1 Score: 76.3 bits (186), Expect = 7.290e-15
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    4 YMGYRAVAAGVKEQEATNNLEKKVKAEEMDLTSEDVVTRESIDTLQTVLGADFKPTDVEVVVATPDGVKI--LAESDIDTHLTAIAEAD 264
            Y GY+A AAGVK+ EA N LEKK+K ++ D TS + V   +I  L TVL ADFKPT++EV + T D  K   L ES+I+ HL AIAE D
Sbjct:  160 YSGYKATAAGVKQLEANNYLEKKIKKKQ-DFTSSEAV-EVAISCLSTVLSADFKPTEIEVGLVTKDNPKYRTLTESEIEAHLIAIAEKD 246          
BLAST of mRNA_M-pyrifera_M_contig90376.20954.1 vs. uniprot
Match: A0A6T1BFF1_9DINO (Proteasome subunit alpha type n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A6T1BFF1_9DINO)

HSP 1 Score: 76.6 bits (187), Expect = 7.370e-15
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 NYMGYRAVAAGVKEQEATNNLEKKVKAEEMDLTSEDVVTRESIDTLQTVLGADFKPTDVEV--VVATPDGVKILAESDIDTHLTAIAEAD 264
            NY GY+A AAG K+QEA N LEK VK ++M L   + + +++I  LQ V+G DFKPTD+EV  V A   G   L+E +ID HLTAIAE D
Sbjct:  185 NYFGYKAAAAGTKDQEAMNALEKIVK-KKMALPETETI-QQAISCLQAVMGMDFKPTDIEVGVVSAAKPGFHRLSEEEIDNHLTAIAEKD 272          
BLAST of mRNA_M-pyrifera_M_contig90376.20954.1 vs. uniprot
Match: A0A7S0G3I3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G3I3_9RHOD)

HSP 1 Score: 72.8 bits (177), Expect = 8.800e-15
Identity = 43/89 (48.31%), Postives = 63/89 (70.79%), Query Frame = 1
Query:    4 YMGYRAVAAGVKEQEATNNLEKKVKAEEMDLTSEDVVTRESIDTLQTVLGADFKPTDVEVVVATPDGVK--ILAESDIDTHLTAIAEAD 264
            Y+G+RA AAG K+QEA N LEKK+K  + +L   + + + +I  LQTVL ADFKP++VEV + T    +  +L+E+D++ HLTAI+E D
Sbjct:   17 YVGFRACAAGQKDQEAMNFLEKKLKNADTELDENETI-QTAILALQTVLAADFKPSEVEVSMVTTAKPRFTVLSEADVEAHLTAISERD 104          
BLAST of mRNA_M-pyrifera_M_contig90376.20954.1 vs. uniprot
Match: A0A7S1WC33_ALECA (Proteasome subunit alpha type n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WC33_ALECA)

HSP 1 Score: 75.5 bits (184), Expect = 1.880e-14
Identity = 46/90 (51.11%), Postives = 62/90 (68.89%), Query Frame = 1
Query:    1 NYMGYRAVAAGVKEQEATNNLEKKVKAEEMDLTSEDVVTRESIDTLQTVLGADFKPTDVEV--VVATPDGVKILAESDIDTHLTAIAEAD 264
            NY GY+A AAG K+QEA N LEK VK +++ L   + + ++++  LQ V+G DFKPTD+EV  V A   G + L+E +ID HLTAIAE D
Sbjct:  180 NYFGYKAAAAGTKDQEAMNALEKIVK-KKLALNETETI-QQAVACLQAVMGMDFKPTDIEVGVVSAARPGFRRLSEQEIDNHLTAIAEKD 267          
BLAST of mRNA_M-pyrifera_M_contig90376.20954.1 vs. uniprot
Match: A0A7S3HIM6_9STRA (Proteasome subunit alpha type n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIM6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.940e-14
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    4 YMGYRAVAAGVKEQEATNNLEKKVKAEEMDLTSEDVVTRESIDTLQTVLGADFKPTDVEVVVATPD--GVKILAESDIDTHLTAIAEAD 264
            YMGY+A AAG K+QEA N LEK  K +++ LT  + + +++I  LQ VLG DFKP D+EV + +    G   L E +IDTHLT IAE D
Sbjct:  157 YMGYKACAAGTKDQEANNALEKVFKKKDLVLTEIETI-QQAIGCLQAVLGMDFKPADIEVGIVSSSRAGFWRLTEEEIDTHLTQIAEKD 244          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90376.20954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812MXX2_9DINO7.810e-2259.30PAA1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A5A8DTC8_CAFRO8.280e-2259.30PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A7S3HIL7_9STRA3.690e-1651.69Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0V0QWW2_PSEPJ3.610e-1552.22PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A0G4GHR3_9ALVE3.720e-1550.00PROTEASOME_ALPHA_1 domain-containing protein n=1 T... [more]
A0A812DAP7_SEPPH7.290e-1553.93Proteasome subunit alpha type n=3 Tax=Coleoidea Ta... [more]
A0A6T1BFF1_9DINO7.370e-1553.33Proteasome subunit alpha type n=1 Tax=Alexandrium ... [more]
A0A7S0G3I3_9RHOD8.800e-1548.31Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1WC33_ALECA1.880e-1451.11Proteasome subunit alpha type n=1 Tax=Alexandrium ... [more]
A0A7S3HIM6_9STRA1.940e-1450.56Proteasome subunit alpha type n=2 Tax=Spumella elo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90376contigM-pyrifera_M_contig90376:526..792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score74.7
Seed ortholog evalue2.4e-11
Seed eggNOG ortholog6669.EFX71218
KEGG koko:K02730
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005839,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019538,GO:0019773,GO:0019941,GO:0030163,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0051603,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
EggNOG OGs38C7B@33154,3BF9H@33208,3CY56@33213,41WK7@6656,COG0638@1,KOG0182@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Exons1
Model size267
Cds size261
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816815.6567845-CDS-M-pyrifera_M_contig90376:525..7861622816815.6567845-CDS-M-pyrifera_M_contig90376:525..786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90376 526..786 -
1692278194.9509408-CDS-M-pyrifera_M_contig90376:525..7861692278194.9509408-CDS-M-pyrifera_M_contig90376:525..786Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90376 526..786 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816815.6733868-UTR-M-pyrifera_M_contig90376:786..7921622816815.6733868-UTR-M-pyrifera_M_contig90376:786..792Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90376 787..792 -
1692278194.9657552-UTR-M-pyrifera_M_contig90376:786..7921692278194.9657552-UTR-M-pyrifera_M_contig90376:786..792Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90376 787..792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90376.20954.1prot_M-pyrifera_M_contig90376.20954.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90376 526..786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90376.20954.1

>prot_M-pyrifera_M_contig90376.20954.1 ID=prot_M-pyrifera_M_contig90376.20954.1|Name=mRNA_M-pyrifera_M_contig90376.20954.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MGYRAVAAGVKEQEATNNLEKKVKAEEMDLTSEDVVTRESIDTLQTVLGA
DFKPTDVEVVVATPDGVKILAESDIDTHLTAIAEAD*
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mRNA from alignment at M-pyrifera_M_contig90376:526..792-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90376.20954.1 ID=mRNA_M-pyrifera_M_contig90376.20954.1|Name=mRNA_M-pyrifera_M_contig90376.20954.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig90376:526..792- (Macrocystis pyrifera P11B4 male)
AACTATATGGGGTACCGCGCAGTGGCTGCTGGCGTGAAAGAGCAGGAAGC CACCAACAACCTTGAGAAAAAGGTCAAGGCAGAAGAAATGGACCTCACCT CTGAAGATGTCGTCACTAGAGAATCCATTGACACCCTCCAGACTGTGCTT GGGGCAGACTTCAAGCCAACTGACGTCGAAGTTGTCGTAGCTACTCCGGA TGGCGTCAAAATTCTCGCTGAATCAGACATCGACACCCACCTCACCGCCA TTGCTGAAGCTGACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90376:526..792-

>mRNA_M-pyrifera_M_contig90376.20954.1 ID=mRNA_M-pyrifera_M_contig90376.20954.1|Name=mRNA_M-pyrifera_M_contig90376.20954.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig90376:526..792- (Macrocystis pyrifera P11B4 male)
ATGGGGTACCGCGCAGTGGCTGCTGGCGTGAAAGAGCAGGAAGCCACCAA
CAACCTTGAGAAAAAGGTCAAGGCAGAAGAAATGGACCTCACCTCTGAAG
ATGTCGTCACTAGAGAATCCATTGACACCCTCCAGACTGTGCTTGGGGCA
GACTTCAAGCCAACTGACGTCGAAGTTGTCGTAGCTACTCCGGATGGCGT
CAAAATTCTCGCTGAATCAGACATCGACACCCACCTCACCGCCATTGCTG
AAGCTGACTGAATGGGGTACCGCGCAGTGGCTGCTGGCGTGAAAGAGCAG
GAAGCCACCAACAACCTTGAGAAAAAGGTCAAGGCAGAAGAAATGGACCT
CACCTCTGAAGATGTCGTCACTAGAGAATCCATTGACACCCTCCAGACTG
TGCTTGGGGCAGACTTCAAGCCAACTGACGTCGAAGTTGTCGTAGCTACT
CCGGATGGCGTCAAAATTCTCGCTGAATCAGACATCGACACCCACCTCAC
CGCCATTGCTGAAGCTGACTGA
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