mRNA_M-pyrifera_M_contig9030.20937.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9030.20937.1
Unique NamemRNA_M-pyrifera_M_contig9030.20937.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig9030.20937.1 vs. uniprot
Match: A0A6H5JP31_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP31_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 2.140e-29
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1
Query:   49 SYVPVTKKGYWQIDMEDVKVSGESVTTVKSAILDSGTSLLVGPSEDVKAIASKVGAIKFMNGEYLMP 249
            +YVPVTKKGYWQIDM++V VSG SVT+VKSAILDSGTSLLVGP EDVK IASKVGAI FMNGEYLMP
Sbjct:  266 NYVPVTKKGYWQIDMDNVDVSGSSVTSVKSAILDSGTSLLVGPKEDVKKIASKVGAISFMNGEYLMP 332          
BLAST of mRNA_M-pyrifera_M_contig9030.20937.1 vs. uniprot
Match: A0A812QE57_SYMPI (Hypothetical protein (Fragment) n=2 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812QE57_SYMPI)

HSP 1 Score: 76.6 bits (187), Expect = 1.320e-14
Identity = 35/66 (53.03%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   49 SYVPVTKKGYWQIDMEDVKVSGESVTTVKSAILDSGTSLLVGPSEDVKAIASKVGAIKFMNGEYLM 246
            S+VP++ + YWQI+M+ VK+ G++V++VKSAI+DSGTSLL GP +DV  IA+K+GA   +  EY++
Sbjct:  222 SFVPLSSETYWQINMDAVKLGGDAVSSVKSAIVDSGTSLLAGPKDDVAKIAAKLGAKSILGKEYVV 287          
BLAST of mRNA_M-pyrifera_M_contig9030.20937.1 vs. uniprot
Match: A0A7S4LNG7_OXYMA (Hypothetical protein n=2 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S4LNG7_OXYMA)

HSP 1 Score: 73.2 bits (178), Expect = 2.360e-13
Identity = 33/66 (50.00%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   49 SYVPVTKKGYWQIDMEDVKVSGESVTTVKSAILDSGTSLLVGPSEDVKAIASKVGAIKFMNGEYLM 246
            S+VP++ + YW + ++ VK+ G ++ + K+AI+DSGTSLL GPS DVKAIASK+GA   +  EY++
Sbjct:  224 SFVPLSSETYWAVGLDGVKLDGSAIGSTKTAIVDSGTSLLAGPSADVKAIASKLGAKSVLGKEYIV 289          
BLAST of mRNA_M-pyrifera_M_contig9030.20937.1 vs. uniprot
Match: UPI0002657509 (lysosomal aspartic protease n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002657509)

HSP 1 Score: 72.8 bits (177), Expect = 3.350e-13
Identity = 34/70 (48.57%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   49 SYVPVTKKGYWQIDMEDVKVSGESVTTVKS----AILDSGTSLLVGPSEDVKAIASKVGAIKFMNGEYLM 246
            +Y+PV++KGYWQ  M+ VK+   S TT+ +    AI D+GTSL+ GP+ +VKA+   +GA  F+NGEYL+
Sbjct:  234 TYIPVSRKGYWQFKMDSVKIGDVSKTTLCANGCQAIADTGTSLIAGPTSEVKALNKAIGAAPFLNGEYLV 303          
BLAST of mRNA_M-pyrifera_M_contig9030.20937.1 vs. uniprot
Match: A0A812ZQ84_SYMMI (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812ZQ84_SYMMI)

HSP 1 Score: 72.8 bits (177), Expect = 3.940e-13
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   49 SYVPVTKKGYWQIDMEDVKVSGESVTTVKSAILDSGTSLLVGPSEDVKAIASKVGAIKFMNGEYLM 246
            S+VP++   YWQI ++ VK+  +SV++VKSAI+DSGTSLL GP +DV  IA+K+GA   +  EY++
Sbjct:  516 SFVPLSSATYWQIKLDAVKLGSDSVSSVKSAIVDSGTSLLAGPKDDVAKIAAKLGAKSILGKEYVV 581          
BLAST of mRNA_M-pyrifera_M_contig9030.20937.1 vs. uniprot
Match: A0A1Q9CZQ5_SYMMI (Lysosomal aspartic protease n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CZQ5_SYMMI)

HSP 1 Score: 72.8 bits (177), Expect = 4.070e-13
Identity = 34/66 (51.52%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   49 SYVPVTKKGYWQIDMEDVKVSGESVTTVKSAILDSGTSLLVGPSEDVKAIASKVGAIKFMNGEYLM 246
            S+VP++   YWQI ++ VK+  +SV++VKSAI+DSGTSLL GP +DV  IA+K+GA   +  EY++
Sbjct:  541 SFVPLSSATYWQIKLDAVKLGSDSVSSVKSAIVDSGTSLLAGPKDDVAKIAAKLGAKSILGKEYVV 606          
BLAST of mRNA_M-pyrifera_M_contig9030.20937.1 vs. uniprot
Match: H2Y0H5_CIOIN (Peptidase A1 domain-containing protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=H2Y0H5_CIOIN)

HSP 1 Score: 72.0 bits (175), Expect = 6.450e-13
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 1
Query:   49 SYVPVTKKGYWQIDMEDVKVSGESVTTVKS--AILDSGTSLLVGPSEDVKAIASKVGAIKFMNGEYLM 246
            SY PVT KGYWQI M+ V V   +   V    AI+DSGTSLL GP+++++ I   +GA KF+NGEY++
Sbjct:  241 SYHPVTVKGYWQISMDSVSVGSSTSACVSGCKAIVDSGTSLLAGPTDEIEKINKLIGATKFLNGEYIV 308          
BLAST of mRNA_M-pyrifera_M_contig9030.20937.1 vs. uniprot
Match: A0A6P3S0W0_PTEVA (cathepsin D-like n=1 Tax=Pteropus vampyrus TaxID=132908 RepID=A0A6P3S0W0_PTEVA)

HSP 1 Score: 70.1 bits (170), Expect = 1.710e-12
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   49 SYVPVTKKGYWQIDMEDVKVSGESVTTVKS---AILDSGTSLLVGPSEDVKAIASKVGAIKFMNGEYLMP 249
            SY+ VT+K YWQ+ ME V V G S+T  K+   AI+D+GTSL+VGP E+V+A+   +GA+  + GEY++P
Sbjct:  124 SYLNVTRKAYWQVHMEQVDV-GNSLTLCKAGCEAIVDTGTSLVVGPVEEVRALQKAIGAVPLIQGEYMIP 192          
BLAST of mRNA_M-pyrifera_M_contig9030.20937.1 vs. uniprot
Match: A0A026VXU6_OOCBI (Lysosomal aspartic protease n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A026VXU6_OOCBI)

HSP 1 Score: 70.5 bits (171), Expect = 2.240e-12
Identity = 34/67 (50.75%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   49 SYVPVTKKGYWQIDMEDVKVSGESVTTVK-SAILDSGTSLLVGPSEDVKAIASKVGAIKFMNGEYLM 246
            +YVPVT+KGYWQI M+ +KVSG+        AI D+GTSL+ GP+ED+ AI S++GA   + GE ++
Sbjct:  235 TYVPVTRKGYWQITMDGIKVSGKKFCASGCQAIADTGTSLIAGPTEDIAAINSEIGATTIIGGEAMV 301          
BLAST of mRNA_M-pyrifera_M_contig9030.20937.1 vs. uniprot
Match: UPI00196A5655 (cathepsin D n=1 Tax=Pteropus giganteus TaxID=143291 RepID=UPI00196A5655)

HSP 1 Score: 70.1 bits (170), Expect = 3.380e-12
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   49 SYVPVTKKGYWQIDMEDVKVSGESVTTVKS---AILDSGTSLLVGPSEDVKAIASKVGAIKFMNGEYLMP 249
            SY+ VT+K YWQ+ ME V V G S+T  K+   AI+D+GTSL+VGP E+V+A+   +GA+  + GEY++P
Sbjct:  259 SYLNVTRKAYWQVHMEQVDV-GNSLTLCKAGCEAIVDTGTSLVVGPVEEVRALQKAIGAVPLIQGEYMIP 327          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9030.20937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP31_9PHAE2.140e-2986.57Peptidase A1 domain-containing protein n=2 Tax=Ect... [more]
A0A812QE57_SYMPI1.320e-1453.03Hypothetical protein (Fragment) n=2 Tax=Symbiodini... [more]
A0A7S4LNG7_OXYMA2.360e-1350.00Hypothetical protein n=2 Tax=Oxyrrhis marina TaxID... [more]
UPI00026575093.350e-1348.57lysosomal aspartic protease n=1 Tax=Galendromus oc... [more]
A0A812ZQ84_SYMMI3.940e-1351.52Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
A0A1Q9CZQ5_SYMMI4.070e-1351.52Lysosomal aspartic protease n=1 Tax=Symbiodinium m... [more]
H2Y0H5_CIOIN6.450e-1351.47Peptidase A1 domain-containing protein n=2 Tax=Cio... [more]
A0A6P3S0W0_PTEVA1.710e-1250.00cathepsin D-like n=1 Tax=Pteropus vampyrus TaxID=1... [more]
A0A026VXU6_OOCBI2.240e-1250.75Lysosomal aspartic protease n=1 Tax=Ooceraea biroi... [more]
UPI00196A56553.380e-1250.00cathepsin D n=1 Tax=Pteropus giganteus TaxID=14329... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9030contigM-pyrifera_M_contig9030:10112..11036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue1.8e-24
Seed eggNOG ortholog2880.D7FLX5
Preferred nameNAPSA
KEGG koko:K01379,ko:K01381,ko:K01382,ko:K06883
KEGG Pathwayko04071,ko04138,ko04140,ko04142,ko04210,ko04915,ko05152,map04071,map04138,map04140,map04142,map04210,map04915,map05152
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004190,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0016787,GO:0019538,GO:0030163,GO:0043170,GO:0044238,GO:0070001,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG1339@1,KOG1339@2759
EC3.4.23.25,3.4.23.34,3.4.23.5
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Exons2
Model size252
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.8854303-CDS-M-pyrifera_M_contig9030:10113..101521622816814.8854303-CDS-M-pyrifera_M_contig9030:10113..10152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9030 10114..10152 -
1692278194.552791-CDS-M-pyrifera_M_contig9030:10113..101521692278194.552791-CDS-M-pyrifera_M_contig9030:10113..10152Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9030 10114..10152 -
1622816814.8978908-CDS-M-pyrifera_M_contig9030:10826..110361622816814.8978908-CDS-M-pyrifera_M_contig9030:10826..11036Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9030 10827..11036 -
1692278194.564229-CDS-M-pyrifera_M_contig9030:10826..110361692278194.564229-CDS-M-pyrifera_M_contig9030:10826..11036Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9030 10827..11036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9030.20937.1prot_M-pyrifera_M_contig9030.20937.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9030 10114..11036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9030.20937.1

>prot_M-pyrifera_M_contig9030.20937.1 ID=prot_M-pyrifera_M_contig9030.20937.1|Name=mRNA_M-pyrifera_M_contig9030.20937.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
LLLVVACLFCATVAACSYVPVTKKGYWQIDMEDVKVSGESVTTVKSAILD
SGTSLLVGPSEDVKAIASKVGAIKFMNGEYLMP
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mRNA from alignment at M-pyrifera_M_contig9030:10112..11036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9030.20937.1 ID=mRNA_M-pyrifera_M_contig9030.20937.1|Name=mRNA_M-pyrifera_M_contig9030.20937.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=925bp|location=Sequence derived from alignment at M-pyrifera_M_contig9030:10112..11036- (Macrocystis pyrifera P11B4 male)
CTTTTGCTTGTCGTCGCCTGCCTGTTTTGTGCCACGGTTGCTGCTTGTAG CTACGTTCCCGTGACAAAGAAGGGTTATTGGCAGATCGATATGGAAGACG TAAAGGTTTCGGGCGAATCGGTGACCACGGTGAAGAGCGCCATCCTTGAC TCGGGCACCTCGCTCCTCGTCGGGCCCTCGGAAGATGTCAAGGCCATCGC CAGCAAAGTGGTGGGTTCCTTTTCTTCTCGATCTGTTTTTTTTTTTTGTT TGCTTTTTTTCTCTTTGCTCTTCCTCTTTTTTCGTTTTCTTGTTTTTATG TATTGCTTTTTTTATTGTTTTCCCGCTTTTTTTGCTGTCGTTTTTTCGTT GCCTTTTTTGTCTCTTTGTCGTTCTCTGTTTTTTTTCTACTGCATCATGC CAATTGGCTATTCTGCTTGCCTTTTTTATTTTCTGTTTCGTGTTTTTGCC TGTCCTTTTTTGTATTGTACGTACCTGTTTAGTTTGTTCTTCTGGGCGCA AATACGCTGGCATGGCAAGAATGGCGTCGATAATTTTTCGTTCAGTATTC GTGGAAGAACAAACACGCTCCCCAGATTTCCCCCGAGCCGAGGGAGAGTG AAGATTACGACTATGTACGCGAGATGTAAATCACGACTAAGGGGACATGT AGGAGCCCCTTATTTCATGTCTAAGCGTTTCGCGTTGGGGCTATAGGGTT TGGGATTAGTGTTGGGCGCCCGTTTTTTCGCGACACCTCCGCCCAATCTC AGCGGCTGTACCTAGTGCCTTTAAACTCCATGTCTAACCTTCTTCTCTTC GTTCCGCCCCGTTGCCTCCGCCGCCTCGGTTTCCGCCGGCGCCGTGCCCA CCTTTACGATACGGCATGTTTTGTGTTTTAACAGGGGGCGATTAAGTTCA TGAACGGGGAGTACCTGATGCCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9030:10112..11036-

>mRNA_M-pyrifera_M_contig9030.20937.1 ID=mRNA_M-pyrifera_M_contig9030.20937.1|Name=mRNA_M-pyrifera_M_contig9030.20937.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig9030:10112..11036- (Macrocystis pyrifera P11B4 male)
CTTTTGCTTGTCGTCGCCTGCCTGTTTTGTGCCACGGTTGCTGCTTGTAG
CTACGTTCCCGTGACAAAGAAGGGTTATTGGCAGATCGATATGGAAGACG
TAAAGGTTTCGGGCGAATCGGTGACCACGGTGAAGAGCGCCATCCTTGAC
TCGGGCACCTCGCTCCTCGTCGGGCCCTCGGAAGATGTCAAGGCCATCGC
CAGCAAAGTGCTTTTGCTTGTCGTCGCCTGCCTGTTTTGTGCCACGGTTG
CTGCTTGTAGCTACGTTCCCGTGACAAAGAAGGGTTATTGGCAGATCGAT
ATGGAAGACGTAAAGGTTTCGGGCGAATCGGTGACCACGGTGAAGAGCGC
CATCCTTGACTCGGGCACCTCGCTCCTCGTCGGGCCCTCGGAAGATGTCA
AGGCCATCGCCAGCAAAGTGGGGGCGATTAAGTTCATGAACGGGGAGTAC
CTGATGCCGGGGGCGATTAAGTTCATGAACGGGGAGTACCTGATGCCG
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