mRNA_M-pyrifera_M_contig9029.20936.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: D8LQN5_ECTSI (Similar to putative chromatin structure regulator n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN5_ECTSI) HSP 1 Score: 343 bits (881), Expect = 5.090e-117 Identity = 159/195 (81.54%), Postives = 180/195 (92.31%), Query Frame = 1 Query: 73 MHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKYIGGTTGDVEKLLLEQKEQSPNRIPYMMCKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFKLNAQQLGRSSRTGRK 657 MHPQFKN THLEAE++LKE SD+RGEA+IRPSSKGPDHLSLTWMW+EGEFMHTDI+E+GKQ GSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLA+ KY GT+ +VEK L +QK+ +PNRIPY+MC++G PG++NLMYLP TVRK VVE++PEGY+MSKRCFKTLPELFKWFKLNAQQLGRSSRT RK Sbjct: 1 MHPQFKNFTHLEAEEFLKEMSDTRGEAVIRPSSKGPDHLSLTWMWVEGEFMHTDIKELGKQPGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLASDKYNPGTSAEVEKTLQKQKDDAPNRIPYLMCRRGVPGYVNLMYLPAHTVRKIVVEVSPEGYVMSKRCFKTLPELFKWFKLNAQQLGRSSRTSRK 195
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: A0A7M7PAU0_STRPU (Transcription elongation factor spt6 n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7PAU0_STRPU) HSP 1 Score: 151 bits (382), Expect = 1.620e-38 Identity = 82/198 (41.41%), Postives = 117/198 (59.09%), Query Frame = 1 Query: 37 AARAGVRHPRSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKYI---GGTTGDVEKLLLEQKEQSPNRIPYMMCK-KGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFKLN 618 AA + R I+HP F+N+T+ +AE+ ++E+ G+ +IRPSSKG DHL++TW +G + H D+QE GK L LKIG EE+EDLDEII+R + V D+ + Y GG+ +EK L +K+++PNRIPY MC + PG L Y P R V ITP+GY + F T+ L +WFK++ Sbjct: 1453 AAASSTYVKRVIVHPSFQNITYKQAEKVMRESDV--GDVIIRPSSKGADHLTVTWKVEDGVYQHIDVQEEGKDNDFSLGSTLKIGEEEFEDLDEIIARHIQPMAAFVRDVTSHKYYHAVEGGSKELMEKYLQTEKKKTPNRIPYFMCLCQNYPGKFLLSYQPRSKGRHEYVSITPDGYKFRGQTFTTINSLHRWFKVH 1648
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: UPI0018CFF9F7 (transcription elongation factor SPT6 n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0018CFF9F7) HSP 1 Score: 151 bits (381), Expect = 2.180e-38 Identity = 79/186 (42.47%), Postives = 111/186 (59.68%), Query Frame = 1 Query: 64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKY--IGGTTGDVEKLLLEQKEQSPNRIPYMM-CKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612 R I+HP F N++ EAE+ + + +GE ++RPSSKG DHL++TW EG + H D++E GK+ L L IGG E+EDLDEII+R V+ L DL++ Y +GG E++L E K ++PN+I Y++ K PG L YLP R V +TP+GY +R F +L L KWFK Sbjct: 1327 RVIVHPAFHNISFAEAEKLMDNMA--QGEVIVRPSSKGSDHLTVTWKVAEGIYQHIDVREEGKENAFSLGKSLWIGGSEFEDLDEIIARHVTPMAGLARDLVSFKYYKPLGGIRDKAEEILKEDKAKNPNKIHYIISAAKNYPGRFLLSYLPSSRCRHEYVSVTPDGYKFRQRMFDSLGALLKWFK 1510
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: A0A2A4IUW9_HELVI (Uncharacterized protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4IUW9_HELVI) HSP 1 Score: 145 bits (367), Expect = 2.390e-37 Identity = 77/186 (41.40%), Postives = 112/186 (60.22%), Query Frame = 1 Query: 64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKY--IGGTTGDVEKLLLEQKEQSPNRIPYMM-CKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612 R I+HP F N++ EAE+ + + + +GE ++RPSSKG DHL++TW +G + H D++E GK+ L L I G E+EDLDEII+R V+ L DL+A Y +GG E++L E+K ++PN+I Y++ K PG L YLP V V +TP+GY +R F +L L +WFK Sbjct: 165 RVIVHPAFHNISFAEAEKLMDKMA--QGEVIVRPSSKGSDHLTVTWKVADGIYQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGLARDLIAYKYYKPLGGMRDKAEEILKEEKARNPNKIHYVISAAKNYPGRFLLSYLPRARVTHEYVSVTPDGYRYRQRNFDSLAGLLRWFK 348
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: UPI0006C95778 (transcription elongation factor SPT6 isoform X1 n=2 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C95778) HSP 1 Score: 148 bits (373), Expect = 2.570e-37 Identity = 78/187 (41.71%), Postives = 111/187 (59.36%), Query Frame = 1 Query: 64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKYIGGTTGDVEK---LLLEQKEQSPNRIPYMM-CKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612 R I+HP F+N+T+ +AE+ ++ + +GEA+IRPSSKG DHL++TW EG H D++E GK+ L L IG EE+EDLDEII+R ++ +LL Y G G EK LL EQK+++P IPY++ K PG L YLP R + +TP+G+ F + +LF+WFK Sbjct: 1332 RVIIHPSFRNITYADAEKLMQ--TMQQGEAIIRPSSKGDDHLTVTWKVTEGIHQHIDVREEGKENKYSLGRSLWIGNEEFEDLDEIIARHINPMAAYATELLDFKYYKGSIMGSKEKSEELLKEQKKENPGGIPYVVSAAKNYPGKFMLSYLPRTRCRHEYISVTPDGFRFRTNTFSRVSDLFRWFK 1516
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: A0A1B6MV82_9HEMI (SH2 domain-containing protein (Fragment) n=2 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6MV82_9HEMI) HSP 1 Score: 139 bits (349), Expect = 7.520e-37 Identity = 74/187 (39.57%), Postives = 109/187 (58.29%), Query Frame = 1 Query: 64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKYI---GGTTGDVEKLLLEQKEQSPNRIPYMMC-KKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612 R I+HP F N++ +EAE+ + + +GE +IRPSSKG DHL++TW +G + H D++E GK+ L L IG EE+EDLDEII+R V+ DL + Y GG E+ L E+K+++P +I Y++ K PG L YLP + ++ +TPEG+ + F T+ FKWFK Sbjct: 50 RVIVHPAFHNISFVEAEKIM--VNMEQGECIIRPSSKGADHLTVTWKVADGIYQHIDVREEGKENAFSLGQSLWIGNEEFEDLDEIIARHVNPMAAHARDLFSFRYYKDTEGGLKDKAEEFLKEEKKKNPQKIHYIISVSKNYPGKFLLSYLPRNRCKHELITVTPEGFRFRGQTFDTVGMCFKWFK 234
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: UPI001F9BC97C (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F9BC97C) HSP 1 Score: 146 bits (369), Expect = 8.790e-37 Identity = 76/186 (40.86%), Postives = 111/186 (59.68%), Query Frame = 1 Query: 64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKY--IGGTTGDVEKLLLEQKEQSPNRIPYMM-CKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612 R I+HP F N++ EAE+ +++ +GE ++RPSSKG DHL++TW +G + H D++E GK+ L L I G E+EDLDEII+R V+ L DL+ Y +GG E++L E+K ++PN+I Y++ K PG L YLP V +TP+GY +R F +LP L +WFK Sbjct: 1224 RVIVHPAFHNISFAEAEKLMEKMG--QGEVIVRPSSKGSDHLTVTWKVADGIYQHIDVREEGKENAFSLGRSLWIQGSEFEDLDEIIARHVTPMAGLARDLIGYKYYKPLGGMRDKAEEILKEEKARNPNKIHYVISAAKNYPGRFLLSYLPRARCTHEYVSVTPDGYKYRQRTFDSLPGLLRWFK 1407
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: UPI001CF25431 (transcription elongation factor SPT6-like n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF25431) HSP 1 Score: 146 bits (369), Expect = 8.810e-37 Identity = 83/204 (40.69%), Postives = 114/204 (55.88%), Query Frame = 1 Query: 22 KGDSSAARAGVRHP----RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKY--IGGTTGDVEKLLLEQKEQSPNRIPYMMCK-KGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612 K + AA+ P R I+HP FKN++ EAE+ L E +GE ++RPSSKG DHL++TW EG + H D++E GK+ L L I EE+EDLDEII+R V ++L Y + G +E++LL +K ++P RIPY++ K PG L YLP R V +TP+G+ R TL LFKWFK Sbjct: 1274 KKEEEAAKKKANRPKYVKRVIVHPSFKNISFKEAERLLAEME--QGECIVRPSSKGADHLTVTWKVDEGVYQHVDVREEGKENAFSLGRSLWIDSEEFEDLDEIIARHVQPMASFAREILNHKNYRAVDGNKTKLEEILLAEKRKAPQRIPYLLSTTKDFPGKFFLGYLPRVKARVEYVSVTPDGFRYRGRVHATLNGLFKWFK 1475
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: UPI0008408D01 (transcription elongation factor SPT6-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI0008408D01) HSP 1 Score: 145 bits (367), Expect = 1.640e-36 Identity = 78/187 (41.71%), Postives = 111/187 (59.36%), Query Frame = 1 Query: 64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSACNDLVNDLLATPKY---IGGTTGDVEKLLLEQKEQSPNRIPYMM-CKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612 R I+HP F N++ EAE+ ++ +GEA+IRPSSKG DHL++TW + + H DI+E GK+ L L IG EE+EDLDEII+R ++ + ++LL Y + G E++L EQK+Q+P IPY++ K PG L YLP R V +TPEG+ + F + ELF+WFK Sbjct: 1316 RVIIHPSFHNVSFAEAEKLMQNVK--QGEAIIRPSSKGSDHLTVTWKVTDNIYQHIDIREEGKENTFSLGRSLWIGSEEFEDLDEIIARHINPMSAYASELLDFKYYKLNVEGVKEKAEEILKEQKKQNPGGIPYIVSAAKNYPGKFLLSYLPRTRCRHEYVTVTPEGFRFRSQMFSKVNELFRWFK 1500
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Match: A0A8J2JMM3_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2JMM3_9HEXA) HSP 1 Score: 145 bits (367), Expect = 1.650e-36 Identity = 77/188 (40.96%), Postives = 116/188 (61.70%), Query Frame = 1 Query: 64 RSIMHPQFKNLTHLEAEQYLKETSDSRGEALIRPSSKGPDHLSLTWMWIEGEFMHTDIQEIGKQRGSMLAPRLKIGGEEYEDLDEIISRRVSA----CNDLVNDLLATPKYIGGTTGDVEKLLLEQKEQSPNRIPYMM-CKKGPPGFINLMYLPGRTVRKTVVEITPEGYLMSKRCFKTLPELFKWFK 612 R I+HP FKN++ E+E+ +++ +GE ++RPSSKG DHL++TW +G + H D++E GK+ L L IG EE+EDLDEII+R V+ C D++N T + GG E+ LLE+K+++ N+I YM+ K PG + YLP V ++ ITPEGY ++ F +L ++ KWFK Sbjct: 1413 RVIVHPSFKNISFRESEKLMEQMD--QGEVIVRPSSKGADHLTVTWKVCDGIYQHIDVREEGKENAFSLGQSLWIGKEEFEDLDEIIARHVNPMAGYCRDIMNYKYHTTAF-GGVRQKAEEYLLEEKKKNANKIHYMLHATKEFPGRFYISYLPRNKVVHELITITPEGYRFRQQNFDSLNQVLKWFK 1597 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9029.20936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig9029.20936.1 >prot_M-pyrifera_M_contig9029.20936.1 ID=prot_M-pyrifera_M_contig9029.20936.1|Name=mRNA_M-pyrifera_M_contig9029.20936.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=221bp GGGRGGGKGDSSAARAGVRHPRSIMHPQFKNLTHLEAEQYLKETSDSRGEback to top mRNA from alignment at M-pyrifera_M_contig9029:6842..10486+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig9029.20936.1 ID=mRNA_M-pyrifera_M_contig9029.20936.1|Name=mRNA_M-pyrifera_M_contig9029.20936.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3645bp|location=Sequence derived from alignment at M-pyrifera_M_contig9029:6842..10486+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig9029:6842..10486+ >mRNA_M-pyrifera_M_contig9029.20936.1 ID=mRNA_M-pyrifera_M_contig9029.20936.1|Name=mRNA_M-pyrifera_M_contig9029.20936.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1326bp|location=Sequence derived from alignment at M-pyrifera_M_contig9029:6842..10486+ (Macrocystis pyrifera P11B4 male)back to top |