mRNA_M-pyrifera_M_contig90285.20932.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig90285.20932.1 vs. uniprot
Match: A0A2D8LWY9_9ACTN (Trigger factor n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LWY9_9ACTN) HSP 1 Score: 273 bits (698), Expect = 9.350e-87 Identity = 150/225 (66.67%), Postives = 184/225 (81.78%), Query Frame = 1 Query: 1 PLSFKVSVKEVKEAVLPDLNDEWAAEASEFETVDELRADLVSRMSSMRIAQSRMALQQNTAEALAELVSVEVPEAMIENEIDARLQDLVQRLQQQGMDPGQYLAQMGQTPDQLRAEFREPAEQAVKVDLALRTVAEAEDLMPDDDAITEAIDEMAAQSGMDGADLKARLTEVGQISALRADLGKRDALEWLTENVELIDDNGDPVDRALLEFPEENTDEEQTDEE 675 PL F ++VKEVKEAVLPDL+DE+A SEFETV++LRAD+ RM++MRI Q+ MA+QQNTAEALA LV+ E+PE+MIENEI+AR+QDLVQRLQQQGMD G YL +GQT + L AEFREPAEQAVKVDLALR+VA+ + L+PDDD I E I EMA SG D +LKARL EVGQISALRADL K+ A+EWLT+NVEL+D++G+ +DR LEFP +E+ +EE Sbjct: 226 PLQFSITVKEVKEAVLPDLDDEFAKANSEFETVEDLRADMADRMNTMRIQQANMAVQQNTAEALAALVTDEIPESMIENEINARIQDLVQRLQQQGMDVGAYLDAVGQTAETLAAEFREPAEQAVKVDLALRSVADLQGLVPDDDRIDEVIAEMAGPSGQDPDELKARLAEVGQISALRADLAKQAAMEWLTDNVELVDEDGEAIDREALEFPARGAEEDSEEEE 450
BLAST of mRNA_M-pyrifera_M_contig90285.20932.1 vs. uniprot
Match: A0A358A563_9ACTN (Trigger factor n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A563_9ACTN) HSP 1 Score: 269 bits (687), Expect = 1.940e-86 Identity = 148/225 (65.78%), Postives = 182/225 (80.89%), Query Frame = 1 Query: 1 PLSFKVSVKEVKEAVLPDLNDEWAAEASEFETVDELRADLVSRMSSMRIAQSRMALQQNTAEALAELVSVEVPEAMIENEIDARLQDLVQRLQQQGMDPGQYLAQMGQTPDQLRAEFREPAEQAVKVDLALRTVAEAEDLMPDDDAITEAIDEMAAQSGMDGADLKARLTEVGQISALRADLGKRDALEWLTENVELIDDNGDPVDRALLEFPEENTDEEQTDEE 675 PL F ++VKEVKEAVLPDL+DE+A SEFETV++LR+D+ RM++MR ++ MA+QQNTAEALA LV+ E+PE+MIENEI+AR+QDLVQRLQQQGMD G YL +GQT + L AEFREPAEQAVKVDLALR+VA+ + L+PDDD I E I EMA SG D +LKARL EVGQISALRADL K+ A+EWLT+NVEL D+NG+ +DR LEFP +E+ +EE Sbjct: 122 PLQFSITVKEVKEAVLPDLDDEFAKANSEFETVEDLRSDMADRMNTMRTQEANMAVQQNTAEALAGLVTDEIPESMIENEINARIQDLVQRLQQQGMDVGAYLDAVGQTAETLAAEFREPAEQAVKVDLALRSVADLQGLVPDDDRIDEVIAEMAGPSGQDPDELKARLAEVGQISALRADLAKQAAMEWLTDNVELADENGEAIDREALEFPARGAEEDSEEEE 346
BLAST of mRNA_M-pyrifera_M_contig90285.20932.1 vs. uniprot
Match: A0A3M2H439_ACTSX (Trigger factor n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2H439_ACTSX) HSP 1 Score: 222 bits (565), Expect = 5.020e-66 Identity = 124/223 (55.61%), Postives = 163/223 (73.09%), Query Frame = 1 Query: 1 PLSFKVSVKEVKEAVLPDLNDEWAAEASEFETVDELRADLVSRMSSMRIAQSRMALQQNTAEALAELVSVEVPEAMIENEIDARLQDLVQRLQQQGMDPGQYLAQMGQTPDQLRAEFREPAEQAVKVDLALRTVAEAEDLMPDDDAITEAIDEMAAQSGMDGADLKARLTEVGQISALRADLGKRDALEWLTENVELIDDNGDPVDRALLEFPEENTDEEQTD 669 PL F++ VKEVK VLP+L+DE AA+ASEF+T++ELRAD+V R+++MR+AQ+ AL++ AEALAELV V LQDLV RL+QQG+D GQYL +G+TP +L AEFREPA AVKVDL LR VA+ EDL PD++ + EA+ E+A ++G D A+L+ RL E GQ+S LRADL K AL+WL E+ E++D +G+PVDRA LEF DE+ TD Sbjct: 276 PLHFRILVKEVKRVVLPELDDELAAQASEFDTLEELRADIVERLTAMRVAQANAALREKVAEALAELVDVXXXXXXXXXXXXXXLQDLVTRLRQQGVDVGQYLEAIGKTPQELAAEFREPAVLAVKVDLGLRAVADLEDLWPDEERLDEALAEIAERAGTDPAELRRRLAEAGQLSGLRADLAKHAALDWLVEHAEIVDPDGNPVDRADLEFTPAGADEDTTD 498
BLAST of mRNA_M-pyrifera_M_contig90285.20932.1 vs. uniprot
Match: A0A7K1ZDD6_9ACTN (Trigger factor n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZDD6_9ACTN) HSP 1 Score: 213 bits (541), Expect = 4.410e-63 Identity = 120/218 (55.05%), Postives = 158/218 (72.48%), Query Frame = 1 Query: 1 PLSFKVSVKEVKEAVLPDLNDEWAAEASEFETVDELRADLVSRMSSMRIAQSRMALQQNTAEALAELVSVEVPEAMIENEIDARLQDLVQRLQQQGMDPGQYLAQMGQTPDQLRAEFREPAEQAVKVDLALRTVAEAEDLMPDDDAITEAIDEMAAQSGMDGADLKARLTEVGQISALRADLGKRDALEWLTENVELIDDNGDPVDRALLEFPEENTD 654 PL F+++V +VKEAVLPDL+D WAA+A+EF T+DELRAD+ R++SM+++ +R AEAL+ LV+ E+PE M+ +E++ RLQ++ LQQ G+DP +YL Q GQ +QLRAE AE AVKVDLALR +AEAE L PDDD + EAIDEMA + G DGA RL E+GQ+ +LRADL K ALEWL +NVEL+D+ G VD L+ PE + D Sbjct: 231 PLHFEITVLDVKEAVLPDLDDTWAAQATEFVTLDELRADIGERLASMKLSMARRVADAKIAEALSALVTREIPEVMVADEVNGRLQEVFGNLQQSGIDPSEYLEQTGQDIEQLRAELSGTAENAVKVDLALRAIAEAEGLSPDDDQLAEAIDEMAVRMGTDGAAHMNRLKELGQLPSLRADLAKSKALEWLLDNVELVDEAGVAVD---LKTPESSQD 445
BLAST of mRNA_M-pyrifera_M_contig90285.20932.1 vs. uniprot
Match: A0A3N5KIU0_9ACTN (Trigger factor (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3N5KIU0_9ACTN) HSP 1 Score: 178 bits (452), Expect = 3.000e-52 Identity = 100/210 (47.62%), Postives = 142/210 (67.62%), Query Frame = 1 Query: 1 PLSFKVSVKEVKEAVLPDLNDEWAAEASEFETVDELRADLVSRMSSMRIAQSRMALQQNTAEALAELVSVEVPEAMIENEIDARLQDLVQRLQQQGMDPGQYLAQMGQTPDQLRAEFREPAEQAVKVDLALRTVAEAEDLMPDDDAITEAIDEMAAQSGMDGADLKARLTEVGQISALRADLGKRDALEWLTENVELIDDNGDPVDRALL 630 P+ F+V VK V+E VLP++NDEW EASEF TVD+LR DL RM+ +R+ QS+MAL++ A AL++LV + P+A+I++E+ RLQDL RLQ QGM QY+A G++ + E R +AVKVDLALR VAEAE + +D + + ID +A ++G A ++ + QI +R+DL KR ALEW+ E+VE++D G P+DR L Sbjct: 11 PIDFRVLVKGVQERVLPEVNDEWVNEASEFTTVDDLRNDLTRRMTIVRVMQSQMALREGAANALSQLVEEDPPDALIDDEMRNRLQDLAMRLQAQGMSIEQYMAATGRSQPEFVEELRTSGREAVKVDLALRAVAEAEAIEVEDAEVDDEIDRIAERTGQKPAQVRKVIERNAQIPEIRSDLRKRKALEWVVEHVEIVDPEGKPIDRGDL 220
BLAST of mRNA_M-pyrifera_M_contig90285.20932.1 vs. uniprot
Match: A0A7V9SZU2_9ACTN (Trigger factor n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9SZU2_9ACTN) HSP 1 Score: 184 bits (467), Expect = 5.360e-52 Identity = 106/210 (50.48%), Postives = 144/210 (68.57%), Query Frame = 1 Query: 4 LSFKVSVKEVKEAVLPDLNDEWAAEASEFETVDELRADLVSRMSSMRIAQSRMALQQNTAEALAELVSVEVPEAMIENEIDARLQDLVQRLQQQGMDPGQYLAQMGQTPDQLRAEFREPAEQAVKVDLALRTVAEAEDLMPDDDAITEAIDEMAAQSGMDGADLKARLTEVGQISALRADLGKRDALEWLTENVELIDDNGDPVDRALLE 633 +SF+V VK+VKE VLPD++DEWA EASEF+TV+ELR DL +R+ SM+ QS AL+Q T +AL L++ E PEA++ E++ R++DL RLQQQGMD QYLA GQ D+L A+ REPA AVK DL LR V EAE + DD + + +MA + G ++ + ALR+++ K +ALEWL E+ E++D+ G PVDRALLE Sbjct: 226 ISFRVLVKDVKEQVLPDVDDEWANEASEFDTVEELRDDLRTRLESMKRMQSAFALRQRTEDALVLLIADEPPEALVSAEMERRVRDLAARLQQQGMDLEQYLAATGQGGDELAAQLREPAVAAVKADLGLRAVIEAESIDATDDEVDAELAKMAERLGEPLKTVRRSFERADGLQALRSNIKKSNALEWLVEHAEVVDEEGRPVDRALLE 435
BLAST of mRNA_M-pyrifera_M_contig90285.20932.1 vs. uniprot
Match: A0A3C0HM22_9ACTN (Trigger factor (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HM22_9ACTN) HSP 1 Score: 179 bits (455), Expect = 2.440e-51 Identity = 97/136 (71.32%), Postives = 117/136 (86.03%), Query Frame = 1 Query: 1 PLSFKVSVKEVKEAVLPDLNDEWAAEASEFETVDELRADLVSRMSSMRIAQSRMALQQNTAEALAELVSVEVPEAMIENEIDARLQDLVQRLQQQGMDPGQYLAQMGQTPDQLRAEFREPAEQAVKVDLALRTVAE 408 PL F ++VKEVKEAVLPDL+DE+A SEFETV++LRAD+ RM++MRI Q+ MA+QQNTAEALA LV+ E+PE+MIENEI+AR+QDLVQRLQQQGMD G YL +GQT + L AEFREP EQAVKVDLALR+VA+ Sbjct: 226 PLQFSITVKEVKEAVLPDLDDEFAKANSEFETVEDLRADMADRMNTMRIQQANMAVQQNTAEALAALVTDEIPESMIENEINARIQDLVQRLQQQGMDVGAYLDAVGQTAETLAAEFREPTEQAVKVDLALRSVAD 361
BLAST of mRNA_M-pyrifera_M_contig90285.20932.1 vs. uniprot
Match: A0A538JTV8_9ACTN (Trigger factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JTV8_9ACTN) HSP 1 Score: 181 bits (460), Expect = 4.410e-51 Identity = 102/209 (48.80%), Postives = 146/209 (69.86%), Query Frame = 1 Query: 4 LSFKVSVKEVKEAVLPDLNDEWAAEASEFETVDELRADLVSRMSSMRIAQSRMALQQNTAEALAELVSVEVPEAMIENEIDARLQDLVQRLQQQGMDPGQYLAQMGQTPDQLRAEFREPAEQAVKVDLALRTVAEAEDLMPDDDAITEAIDEMAAQSGMDGADLKARLTEVGQISALRADLGKRDALEWLTENVELIDDNGDPVDRALL 630 ++ +V VKEVKE +LPD+ DEWA+EASEF+TVDELR D+ +RMS+++ Q+++AL++ +A+ +LV E+PEA++ +E++ RL D+V RLQ QG D QYL MG+ D+ +E R A AVK DLALR VA+AE + DD + I +A + G A L+ RL Q+ A+R+D+ K ALEWL E+VE++D+ G PVDRALL Sbjct: 227 VTIQVLVKEVKEKLLPDVTDEWASEASEFDTVDELRGDIRTRMSTVKKVQTQLALREQVVDAIVQLVEEEMPEALVGHEMERRLHDIVHRLQAQGADLEQYLEAMGKPQDEFISELRSGAVDAVKADLALRAVADAEAVEADDADLDAEIARLAERLGEKPAALRRRLDRGDQLPAVRSDIRKGKALEWLVEHVEIVDEEGRPVDRALL 435
BLAST of mRNA_M-pyrifera_M_contig90285.20932.1 vs. uniprot
Match: A0A355DI70_9ACTN (Trigger factor (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A355DI70_9ACTN) HSP 1 Score: 180 bits (457), Expect = 1.100e-50 Identity = 106/221 (47.96%), Postives = 152/221 (68.78%), Query Frame = 1 Query: 4 LSFKVSVKEVKEAVLPDLNDEWAAEASEFETVDELRADLVSRMSSMRIAQSRMALQQNTAEALAELVSVEVPEAMIENEIDARLQDLVQRLQQQGMDPGQYLAQMGQTPDQLRAEFREPAEQAVKVDLALRTVAEAEDLMPDDDAITEAIDEMAAQSGMDGADLKARLTEVGQISALRADLGKRDALEWLTENVELIDDNGDPVDRALLEFPEENTDEEQT 666 L F++ VKEV+ VLPD++D +AA ASEF+T +EL ADL R+ SM+ Q+ + ++ TAEA+A+LV V+ P A++E EID R++DL RL QG+ +YL MG+ D LR +FRE AE + +VDL LR VAEAE L DDD + +D +A+QS D ++ RL E G++ +RADL K+ ALEWL E VE++D++G+ VDR +L+ PE+ +E T Sbjct: 225 LRFRIEVKEVQVTVLPDVDDAFAATASEFDTAEELIADLRKRIDSMKRDQAAILVRDRTAEAVADLVEVQPPAALVEAEIDGRIRDLAMRLDSQGLKLERYLEAMGRDVDSLRDDFRESAEISSRVDLGLRAVAEAEGLEADDDLLGSYLDILASQSDSDVDTVRERLRESGRLLDVRADLRKQAALEWLLERVEIVDEDGNEVDRGILDPPEQPDGDEMT 445
BLAST of mRNA_M-pyrifera_M_contig90285.20932.1 vs. uniprot
Match: A0A349B126_9ACTN (Trigger factor n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B126_9ACTN) HSP 1 Score: 181 bits (459), Expect = 9.330e-50 Identity = 105/215 (48.84%), Postives = 147/215 (68.37%), Query Frame = 1 Query: 4 LSFKVSVKEVKEAVLPDLNDEWAAEASEFETVDELRADLVSRMSSMRIAQSRMALQQNTAEALAELVSVEVPEAMIENEIDARLQDLVQRLQQQGMDPGQYLAQMGQTPDQLRAEFREPAEQAVKVDLALRTVAEAEDLMPDDDAITEAIDEMAAQSGMDGADLKARLTEVGQISALRADLGKRDALEWLTENVELIDDNGDPVDRALLEFPEEN 648 L F ++VKEVK VLP+L DEWA+E S+F+TV+EL DL +RM +R AQ LQ+ +ALA+LV +E+PEA++ E++ RLQDL RLQ QG++ QYL G++ +QL E RE AE A +VDL LR VA AE + DD + I+ +A + G A ++ +L QI A+R+D+ KR ALEWL ++VE++D+NGDPVDR+L E EE+ Sbjct: 404 LHFAITVKEVKAKVLPELTDEWASENSDFDTVEELENDLRTRMVEVRKAQGAGELQEKVGQALAKLVDLELPEALVSMELNNRLQDLAMRLQAQGLELEQYLMMTGRSQEQLVDELREAAETASRVDLGLRAVAAAEKIDCSDDELDAEIESVAERVGEKPAKVRQQLERNDQIPAVRSDITKRKALEWLLDHVEIVDENGDPVDRSLYETDEED 618 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90285.20932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig90285.20932.1 >prot_M-pyrifera_M_contig90285.20932.1 ID=prot_M-pyrifera_M_contig90285.20932.1|Name=mRNA_M-pyrifera_M_contig90285.20932.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=238bp PLSFKVSVKEVKEAVLPDLNDEWAAEASEFETVDELRADLVSRMSSMRIAback to top mRNA from alignment at M-pyrifera_M_contig90285:79..792- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig90285.20932.1 ID=mRNA_M-pyrifera_M_contig90285.20932.1|Name=mRNA_M-pyrifera_M_contig90285.20932.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig90285:79..792- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig90285:79..792- >mRNA_M-pyrifera_M_contig90285.20932.1 ID=mRNA_M-pyrifera_M_contig90285.20932.1|Name=mRNA_M-pyrifera_M_contig90285.20932.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1428bp|location=Sequence derived from alignment at M-pyrifera_M_contig90285:79..792- (Macrocystis pyrifera P11B4 male)back to top |