mRNA_M-pyrifera_M_contig90264.20925.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90264.20925.1
Unique NamemRNA_M-pyrifera_M_contig90264.20925.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90264.20925.1 vs. uniprot
Match: A0A7N0V8P4_KALFE (SWIB/MDM2 domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0V8P4_KALFE)

HSP 1 Score: 108 bits (270), Expect = 4.780e-25
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   22 EQPTWTLRIEGQLLG--------GQASGKFFEGHRFTSFFRKVVIHLDDELAVDNNVVEWDREGAEGHSDGFEVQRAGSRGGKARVQLHLHHAPARYRLSAELAALLGLQTDTRSRIIVKFWYYVKNHGL 387
            E PTWTLR+ G++L         G          +F+SFF++V I LD++L   NNV+ WD+  +    DGFEV+R G +   A+V+L ++++P ++RLS  LAALLG++ DTR+RII   W+YVK   L
Sbjct:  233 EPPTWTLRVTGRILADDEDPNQPGAQHRSNASSPKFSSFFKRVTITLDEQLYPVNNVIVWDQARSAAVHDGFEVKRKGDKEFNAQVKLEMNYSPKKFRLSPPLAALLGMEVDTRARIIAALWHYVKGRNL 362          
BLAST of mRNA_M-pyrifera_M_contig90264.20925.1 vs. uniprot
Match: L8GE42_ACACA (SWIB/MDM2 domain containing protein n=2 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GE42_ACACA)

HSP 1 Score: 104 bits (259), Expect = 7.860e-24
Identity = 52/127 (40.94%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   22 EQPTWTLRIEGQLLGGQASGKFFEGHR-----FTSFFRKVVIHLDDELAVDNNVVEWDREGAEGHSDGFEVQRAGSRGGKARVQLHLHHAPARYRLSAELAALLGLQTDTRSRIIVKFWYYVKNHGL 387
            E P+WTLRIEG L   +   +     R     F+ FFRKV++ LD ++   N+ +EWD+  + G +DGFE++RAG     A++ LHL +AP R++LS  L   LG+ TDTR +I++  W YV+ + L
Sbjct:  125 EPPSWTLRIEGYLFDQEVDLQRRTTSRPTKTKFSRFFRKVLVQLDKDVYTPNDTIEWDKAQSHGDTDGFEIKRAGDAETTAKIILHLDYAPNRFKLSPALGGALGMHTDTRPKIVLGVWQYVRANRL 251          
BLAST of mRNA_M-pyrifera_M_contig90264.20925.1 vs. uniprot
Match: D8T2I9_SELML (SWIB/MDM2 domain-containing protein (Fragment) n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T2I9_SELML)

HSP 1 Score: 101 bits (252), Expect = 6.010e-23
Identity = 50/130 (38.46%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   19 GEQPTWTLRIEGQLLGGQ-----ASGKFFEGHRFTSFFRKVVIHLDDELAVDNNVVEWDREGAEGHS--DGFEVQRAGSRGGKARVQLHLHHAPARYRLSAELAALLGLQTDTRSRIIVKFWYYVKNHGL 387
            GE P+WTLRI G+++G       A+ K     +F+SFF+++ + LD  +  +N+ + WD  G  G +  +GFE++R G +   A ++L + + P RY+LS  LA LLG++ +TR+RII  FW+Y+K   L
Sbjct:   95 GEPPSWTLRIMGRIVGDDGETESAAAKSLPFPKFSSFFKRITVQLDPAMYPENSTIVWDAGGGGGSAPVEGFEIKRKGDKELTAIIRLDMKYTPERYKLSPPLAELLGVEVETRARIIAAFWHYIKGKKL 224          
BLAST of mRNA_M-pyrifera_M_contig90264.20925.1 vs. uniprot
Match: A0A2R6WAJ5_MARPO (SWIB/MDM2 domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WAJ5_MARPO)

HSP 1 Score: 101 bits (251), Expect = 1.820e-22
Identity = 51/128 (39.84%), Postives = 80/128 (62.50%), Query Frame = 1
Query:   22 EQPTWTLRIEGQLLGG--------QASGKF--FEGHRFTSFFRKVVIHLDDELAVDNNVVEWDREGAEGHSDGFEVQRAGSRGGKARVQLHLHHAPARYRLSAELAALLGLQTDTRSRIIVKFWYYVK 375
            E P+WTLRI G++L          Q++ +F   + H+F+SFFR+V   LD  L  DN+ + WD   A  H +GFE++R G +  K  ++L ++++P R++LSA LA +LG++ +TR RII   W Y+K
Sbjct:  207 EPPSWTLRIMGRILEDSSEPENQPQSAQQFQALKNHKFSSFFRRVTFQLDRNLYHDNHTIVWDVTKAGPHVEGFEIKRKGDQEFKVYIRLEMNYSPERFKLSAALAEMLGMEVETRPRIIAALWQYIK 334          
BLAST of mRNA_M-pyrifera_M_contig90264.20925.1 vs. uniprot
Match: A0A2Z6QYR6_9GLOM (SWIB/MDM2 domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QYR6_9GLOM)

HSP 1 Score: 100 bits (250), Expect = 2.430e-22
Identity = 49/124 (39.52%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   28 PTWTLRIEGQLLGGQASGKF--FEGHRFTSFFRKVVIHLD--DELAVDNNVVEWDREGAEGHSDGFEVQRAGSRGGKARVQLHLHHAPARYRLSAELAALLGLQTDTRSRIIVKFWYYVKNHGL 387
            P W L+IEG+LL  Q S K       +F+SFF  +++ LD   E+  D N +EW++       DGFE++R G    K ++ L+L   P RY+LS ELA+LLG++ +T++ +I+  W Y+K+H L
Sbjct:  196 PAWILKIEGRLLDPQNSSKTNKIPSRKFSSFFNSIIVDLDRDPEMYPDGNTIEWNKSSNTDGVDGFEIKRKGDSNVKCKIYLNLDKHPPRYKLSDELASLLGIKEETKTGVILALWQYIKHHNL 319          
BLAST of mRNA_M-pyrifera_M_contig90264.20925.1 vs. uniprot
Match: A0A388KNX8_CHABU (SWIB/MDM2 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KNX8_CHABU)

HSP 1 Score: 98.2 bits (243), Expect = 2.190e-21
Identity = 51/145 (35.17%), Postives = 81/145 (55.86%), Query Frame = 1
Query:   28 PTWTLRIEGQLL-------------GGQASGKFFEGH------------RFTSFFRKVVIHLDDELAVDNNVVEWDREGAEGHSDGFEVQRAGSRGGKARVQLHLHHAPARYRLSAELAALLGLQTDTRSRIIVKFWYYVKNHGL 387
            P+WTLR+ G+LL              G A+G     +            +F++FFR++ + LD EL  DN+ V WD E A    +GFE++R G +   A+++  L+H P RY++S EL  +LG+QT+TR+R++   W Y+K+  L
Sbjct:  176 PSWTLRVVGRLLEDESQAEDDGPNGAGNAAGGVGAANPMASGNSSNSTFKFSTFFRRITVELDHELYPDNHTVVWDSERAVSPVEGFEIKRRGDKEFIAKLKFELNHVPERYKVSPELGEILGVQTETRARVLSALWQYIKSQSL 320          
BLAST of mRNA_M-pyrifera_M_contig90264.20925.1 vs. uniprot
Match: A0A1J7HNU5_LUPAN (SWIB/MDM2 domain-containing protein n=2 Tax=Lupinus TaxID=3869 RepID=A0A1J7HNU5_LUPAN)

HSP 1 Score: 98.2 bits (243), Expect = 2.280e-21
Identity = 50/132 (37.88%), Postives = 79/132 (59.85%), Query Frame = 1
Query:   22 EQPTWTLRIEGQLL----------GGQASGKFFEGHRFTSFFRKVVIHLDDELAVDNNVVEWDREGAEGHSDGFEVQRAGSRGGKARVQLHLHHAPARYRLSAELAALLGLQTDTRSRIIVKFWYYVKNHGL 387
            E PTWTL+I G++L          G Q S + +   +F+SFF++V I LD  L  DN++++W+   +    +GFEV+R G +   A ++L ++H P +++LS  L  +LG++ DTR RII   W+YVK   L
Sbjct:  209 EPPTWTLKIVGRILEDNEEPDQPGGVQKSTESYP--KFSSFFKRVTISLDQRLYPDNHIIKWENARSAAPHEGFEVKRKGDKEFSAHIRLEMNHIPEKFKLSPALKEVLGIEVDTRPRIIAAIWHYVKARKL 338          
BLAST of mRNA_M-pyrifera_M_contig90264.20925.1 vs. uniprot
Match: UPI00053FAF53 (SWI/SNF complex component SNF12 homolog n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FAF53)

HSP 1 Score: 97.4 bits (241), Expect = 3.240e-21
Identity = 46/120 (38.33%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   19 GEQPTWTLRIEGQLLG-GQASGKFFEGHRFTSFFRKVVIHLDDELAVDNNVVEWDREGAEGHSDGFEVQRAGSRGGKARVQLHLHHAPARYRLSAELAALLGLQTDTRSRIIVKFWYYVK 375
            G+ PTWTL+I G +L  G  S +     +F+SFF+K+ I+LD  L  DN+V+ W+   +    +GFEV+R G +   A ++L +++ P +++LSA L   LG++ ++R+RI+   W+YVK
Sbjct:  146 GDAPTWTLKITGTVLDDGVDSNRCISNPKFSSFFKKITIYLDQTLYPDNHVILWENSRSPVLHEGFEVKRKGDKEFTAIIRLEMNYVPEKFKLSAALTQALGIEVESRARIMTALWHYVK 265          
BLAST of mRNA_M-pyrifera_M_contig90264.20925.1 vs. uniprot
Match: A0A0K9QY94_SPIOL (SWIB/MDM2 domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9QY94_SPIOL)

HSP 1 Score: 97.4 bits (241), Expect = 3.610e-21
Identity = 49/125 (39.20%), Postives = 77/125 (61.60%), Query Frame = 1
Query:   22 EQPTWTLRIEGQLL--GGQASGKFFEGH-----RFTSFFRKVVIHLDDELAVDNNVVEWDREGAEGHSDGFEVQRAGSRGGKARVQLHLHHAPARYRLSAELAALLGLQTDTRSRIIVKFWYYVK 375
            E PTWTL+I G +L  GG +S            +F+SFF+K+ I+LD  L  DN+V+ W+   +    +GFEV+R G +   A ++L ++H P +++LSA L  +LG++ +TR RI+   W+YVK
Sbjct:  162 EVPTWTLKIMGNMLEDGGDSSSDSMVNRSIHYPKFSSFFKKITIYLDQTLYPDNHVILWESSRSRVLHEGFEVKRKGDKEFTAIIRLEMNHVPEKFKLSAALTQVLGIEVETRPRIMAALWHYVK 286          
BLAST of mRNA_M-pyrifera_M_contig90264.20925.1 vs. uniprot
Match: A0A830CL54_9LAMI (Swi/snf complex component snf12 homolog n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CL54_9LAMI)

HSP 1 Score: 97.4 bits (241), Expect = 3.660e-21
Identity = 49/131 (37.40%), Postives = 82/131 (62.60%), Query Frame = 1
Query:   22 EQPTWTLRIEGQLLGG-----QASGKFFEGH----RFTSFFRKVVIHLDDELAVDNNVVEWDREGAEGHSDGFEVQRAGSRGGKARVQLHLHHAPARYRLSAELAALLGLQTDTRSRIIVKFWYYVKNHGL 387
            E PTWTL+I G++L       QA+    + +    +F+SFF++V I LD ++ +DN+++ WD   +    +GFEV+R G +   A ++L +++ P +Y+LSA L  LLG++ DTR+R++   W+YVK   L
Sbjct:  164 EPPTWTLKIVGRILEDGVDPDQAAAMMQKPNPSYPKFSSFFKRVTITLDQKIYLDNHLIIWDSARSPAPHEGFEVKRKGDQEFTANIRLEMNYTPEKYKLSAALTELLGIEVDTRARVMAAIWHYVKARKL 294          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90264.20925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7N0V8P4_KALFE4.780e-2542.31SWIB/MDM2 domain-containing protein n=1 Tax=Kalanc... [more]
L8GE42_ACACA7.860e-2440.94SWIB/MDM2 domain containing protein n=2 Tax=Acanth... [more]
D8T2I9_SELML6.010e-2338.46SWIB/MDM2 domain-containing protein (Fragment) n=1... [more]
A0A2R6WAJ5_MARPO1.820e-2239.84SWIB/MDM2 domain-containing protein n=1 Tax=Marcha... [more]
A0A2Z6QYR6_9GLOM2.430e-2239.52SWIB/MDM2 domain-containing protein n=2 Tax=Rhizop... [more]
A0A388KNX8_CHABU2.190e-2135.17SWIB/MDM2 domain-containing protein n=1 Tax=Chara ... [more]
A0A1J7HNU5_LUPAN2.280e-2137.88SWIB/MDM2 domain-containing protein n=2 Tax=Lupinu... [more]
UPI00053FAF533.240e-2138.33SWI/SNF complex component SNF12 homolog n=1 Tax=Be... [more]
A0A0K9QY94_SPIOL3.610e-2139.20SWIB/MDM2 domain-containing protein n=1 Tax=Spinac... [more]
A0A830CL54_9LAMI3.660e-2137.40Swi/snf complex component snf12 homolog n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90264contigM-pyrifera_M_contig90264:1..792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score105.9
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog6239.C18E3.2.1
KEGG koko:K11650
KEGG Pathwayko04714,ko05225,map04714,map05225
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0000793,GO:0001085,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0006355,GO:0006357,GO:0008134,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0012505,GO:0016514,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0070603,GO:0080090,GO:1902494,GO:1903506,GO:1904949,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II transcription factor binding
EggNOG OGs1KTQ2@119089,38CY5@33154,3B98S@33208,3CU8T@33213,40AP4@6231,40T43@6236,COG5531@1,KOG2570@2759
COG Functional cat.BK
Best tax levelRhabditida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03021,ko03036
Exons2
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.343349-CDS-M-pyrifera_M_contig90264:0..2131622816814.343349-CDS-M-pyrifera_M_contig90264:0..213Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90264 1..213 -
1692278194.2592204-CDS-M-pyrifera_M_contig90264:0..2131692278194.2592204-CDS-M-pyrifera_M_contig90264:0..213Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90264 1..213 -
1622816814.354155-CDS-M-pyrifera_M_contig90264:618..7921622816814.354155-CDS-M-pyrifera_M_contig90264:618..792Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90264 619..792 -
1692278194.273417-CDS-M-pyrifera_M_contig90264:618..7921692278194.273417-CDS-M-pyrifera_M_contig90264:618..792Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90264 619..792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90264.20925.1prot_M-pyrifera_M_contig90264.20925.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90264 1..792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90264.20925.1

>prot_M-pyrifera_M_contig90264.20925.1 ID=prot_M-pyrifera_M_contig90264.20925.1|Name=mRNA_M-pyrifera_M_contig90264.20925.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
DERQGGGEQPTWTLRIEGQLLGGQASGKFFEGHRFTSFFRKVVIHLDDEL
AVDNNVVEWDREGAEGHSDGFEVQRAGSRGGKARVQLHLHHAPARYRLSA
ELAALLGLQTDTRSRIIVKFWYYVKNHGL
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mRNA from alignment at M-pyrifera_M_contig90264:1..792-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90264.20925.1 ID=mRNA_M-pyrifera_M_contig90264.20925.1|Name=mRNA_M-pyrifera_M_contig90264.20925.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig90264:1..792- (Macrocystis pyrifera P11B4 male)
GACGAGAGGCAGGGGGGAGGAGAGCAGCCGACGTGGACGCTGCGCATCGA GGGCCAGCTGCTGGGGGGGCAGGCGAGCGGAAAGTTCTTCGAGGGCCACC GCTTCACTTCGTTCTTCCGCAAGGTCGTCATCCACCTCGACGACGAGCTG GCGGTCGACAACAATGTCGTAGAGGTACCTTGCCCTCCTAGACACACACA CAGTTTCTCTCTTTCTCTCTTTCTATCCCCCTGTCTGTCTCACTGTCGCA CGCGGTCACTCTCTGTCTCCGTCATTCTCTGCCACTCACACTCCACTCAC CCCCAACACACTGAGCACACTGAGCACACCATCACACCATCACACTAAGC ACACACATCACTCACTCTCACTCTCACAGTCACTATGTGCTCTCTCTCTC TTCTCTCTTCTCTCTCCTCTCTCCTCTCTCGCTCTTCTCTCTCCTCTCTC GCTCTTCTCTCTCTTCGCTCTCTTCTCTCTCTCTTCTCTCTCTTCTCTCT CTCTCTCTCTCCCTCTCTCCCAACCCCCCCTCCGCTTCCCCCTCCCACCT CCCGTTGTACAGGCCTGACAGCGGCGCAGTGGGACCGCGAGGGTGCGGAG GGCCACAGCGACGGCTTCGAGGTGCAGCGTGCGGGCAGCAGGGGCGGCAA GGCGCGCGTGCAGCTGCACCTGCACCACGCGCCCGCCCGCTACCGCCTTT CCGCCGAGCTGGCCGCGCTGCTGGGCCTGCAGACCGACACGCGCTCGCGC ATCATCGTCAAATTCTGGTACTACGTCAAGAACCACGGCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90264:1..792-

>mRNA_M-pyrifera_M_contig90264.20925.1 ID=mRNA_M-pyrifera_M_contig90264.20925.1|Name=mRNA_M-pyrifera_M_contig90264.20925.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig90264:1..792- (Macrocystis pyrifera P11B4 male)
GACGAGAGGCAGGGGGGAGGAGAGCAGCCGACGTGGACGCTGCGCATCGA
GGGCCAGCTGCTGGGGGGGCAGGCGAGCGGAAAGTTCTTCGAGGGCCACC
GCTTCACTTCGTTCTTCCGCAAGGTCGTCATCCACCTCGACGACGAGCTG
GCGGTCGACAACAATGTCGTAGAGGACGAGAGGCAGGGGGGAGGAGAGCA
GCCGACGTGGACGCTGCGCATCGAGGGCCAGCTGCTGGGGGGGCAGGCGA
GCGGAAAGTTCTTCGAGGGCCACCGCTTCACTTCGTTCTTCCGCAAGGTC
GTCATCCACCTCGACGACGAGCTGGCGGTCGACAACAATGTCGTAGAGTG
GGACCGCGAGGGTGCGGAGGGCCACAGCGACGGCTTCGAGGTGCAGCGTG
CGGGCAGCAGGGGCGGCAAGGCGCGCGTGCAGCTGCACCTGCACCACGCG
CCCGCCCGCTACCGCCTTTCCGCCGAGCTGGCCGCGCTGCTGGGCCTGCA
GACCGACACGCGCTCGCGCATCATCGTCAAATTCTGGTACTACGTCAAGA
ACCACGGCCTGTGGGACCGCGAGGGTGCGGAGGGCCACAGCGACGGCTTC
GAGGTGCAGCGTGCGGGCAGCAGGGGCGGCAAGGCGCGCGTGCAGCTGCA
CCTGCACCACGCGCCCGCCCGCTACCGCCTTTCCGCCGAGCTGGCCGCGC
TGCTGGGCCTGCAGACCGACACGCGCTCGCGCATCATCGTCAAATTCTGG
TACTACGTCAAGAACCACGGCCTG
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