mRNA_M-pyrifera_M_contig90263.20924.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90263.20924.1
Unique NamemRNA_M-pyrifera_M_contig90263.20924.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90263.20924.1 vs. uniprot
Match: A0A0L0HV40_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HV40_SPIPD)

HSP 1 Score: 57.0 bits (136), Expect = 3.890e-7
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:   31 TAPLLLMPVVGQILACLVMSWASAWMLLTAFFTRQGLSLKWQARLIYMRFGEYMAFGVPVTIIQHIPIVSSLFVFVDVTGAALWAVDM 294
            TAPL L+P+ G IL  L+  + +AW L   +F  +G       + +      Y +FG    +++ +PI+  LF+F ++ G+ALWA+DM
Sbjct:  143 TAPLHLLPIFGTILFLLLNGYLAAWALHLHWFDLRGFGFTAGKKFVRSHRQAYTSFGSVAVLLEMVPIIGMLFMFTNIVGSALWAIDM 230
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90263.20924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0L0HV40_SPIPD3.890e-734.09Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90263contigM-pyrifera_M_contig90263:80..460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size381
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.2973397-UTR-M-pyrifera_M_contig90263:79..971622816814.2973397-UTR-M-pyrifera_M_contig90263:79..97Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90263 80..97 +
1692278194.2353601-UTR-M-pyrifera_M_contig90263:79..971692278194.2353601-UTR-M-pyrifera_M_contig90263:79..97Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90263 80..97 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816814.3089557-CDS-M-pyrifera_M_contig90263:97..4601622816814.3089557-CDS-M-pyrifera_M_contig90263:97..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90263 98..460 +
1692278194.2460423-CDS-M-pyrifera_M_contig90263:97..4601692278194.2460423-CDS-M-pyrifera_M_contig90263:97..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90263 98..460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90263.20924.1prot_M-pyrifera_M_contig90263.20924.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90263 98..460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90263.20924.1

>prot_M-pyrifera_M_contig90263.20924.1 ID=prot_M-pyrifera_M_contig90263.20924.1|Name=mRNA_M-pyrifera_M_contig90263.20924.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MELLTAPLLLMPVVGQILACLVMSWASAWMLLTAFFTRQGLSLKWQARLI
YMRFGEYMAFGVPVTIIQHIPIVSSLFVFVDVTGAALWAVDMASLSNAFR
YIKVNADQQTQEILADAGLAE
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mRNA from alignment at M-pyrifera_M_contig90263:80..460+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90263.20924.1 ID=mRNA_M-pyrifera_M_contig90263.20924.1|Name=mRNA_M-pyrifera_M_contig90263.20924.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig90263:80..460+ (Macrocystis pyrifera P11B4 male)
CTGACTTGCAAGGTTGCGATGGAGCTGCTGACGGCGCCTTTGCTGCTGAT
GCCGGTGGTGGGTCAGATCCTCGCCTGCCTCGTGATGTCGTGGGCCAGCG
CATGGATGCTCCTCACTGCGTTCTTCACTCGACAAGGCCTCAGCTTGAAG
TGGCAGGCTCGTCTCATCTACATGCGCTTCGGGGAGTACATGGCGTTCGG
CGTGCCTGTGACGATCATCCAGCACATTCCGATCGTGTCCAGCCTCTTTG
TGTTCGTCGACGTCACTGGCGCAGCGTTGTGGGCAGTGGACATGGCATCG
CTGTCCAATGCCTTCCGCTACATCAAGGTCAATGCCGACCAGCAAACACA
GGAGATCCTTGCCGACGCAGGCCTTGCTGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90263:80..460+

>mRNA_M-pyrifera_M_contig90263.20924.1 ID=mRNA_M-pyrifera_M_contig90263.20924.1|Name=mRNA_M-pyrifera_M_contig90263.20924.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig90263:80..460+ (Macrocystis pyrifera P11B4 male)
ATGGAGCTGCTGACGGCGCCTTTGCTGCTGATGCCGGTGGTGGGTCAGAT
CCTCGCCTGCCTCGTGATGTCGTGGGCCAGCGCATGGATGCTCCTCACTG
CGTTCTTCACTCGACAAGGCCTCAGCTTGAAGTGGCAGGCTCGTCTCATC
TACATGCGCTTCGGGGAGTACATGGCGTTCGGCGTGCCTGTGACGATCAT
CCAGCACATTCCGATCGTGTCCAGCCTCTTTGTGTTCGTCGACGTCACTG
GCGCAGCGTTGTGGGCAGTGGACATGGCATCGCTGTCCAATGCCTTCCGC
TACATCAAGGTCAATGCCGACCAGCAAACACAGGAGATCCTTGCCGACGC
AGGCCTTGCTGAGATGGAGCTGCTGACGGCGCCTTTGCTGCTGATGCCGG
TGGTGGGTCAGATCCTCGCCTGCCTCGTGATGTCGTGGGCCAGCGCATGG
ATGCTCCTCACTGCGTTCTTCACTCGACAAGGCCTCAGCTTGAAGTGGCA
GGCTCGTCTCATCTACATGCGCTTCGGGGAGTACATGGCGTTCGGCGTGC
CTGTGACGATCATCCAGCACATTCCGATCGTGTCCAGCCTCTTTGTGTTC
GTCGACGTCACTGGCGCAGCGTTGTGGGCAGTGGACATGGCATCGCTGTC
CAATGCCTTCCGCTACATCAAGGTCAATGCCGACCAGCAAACACAGGAGA
TCCTTGCCGACGCAGGCCTTGCTGAG
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