mRNA_M-pyrifera_M_contig90214.20918.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90214.20918.1
Unique NamemRNA_M-pyrifera_M_contig90214.20918.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90214.20918.1 vs. uniprot
Match: A0A2D8LXA9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LXA9_9ACTN)

HSP 1 Score: 98.2 bits (243), Expect = 2.630e-22
Identity = 56/111 (50.45%), Postives = 70/111 (63.06%), Query Frame = 1 
Query:    1 DEMVAILRNDGSPAALADRCRGWIGAAPGAEQMAERAVMAAIDDWHFDTTSRTTTVVESSDDDITVVDVATDRGRWRVEVETGRAVPTIACGVAGGLPAKPGAEWRVRSIT 333
            +EM  IL   GSPA +A RCRGW G   G  Q+AERAV   +DDW  D  +R+     + D  + +VDVA    R+ VE+E GRAVPTIAC   GGLPAKPG E+RV  ++
Sbjct:  207 EEMGRILDRHGSPATVAHRCRGWTGT-DGVGQVAERAVFTMLDDWAVDDLARSVETQPNGDGWLAMVDVA--GRRFGVEIERGRAVPTIACRADGGLPAKPGTEYRVVGVS 314
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BLAST of mRNA_M-pyrifera_M_contig90214.20918.1 vs. uniprot
Match: A0A2E9XBI9_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2E9XBI9_9ACTN)

HSP 1 Score: 63.9 bits (154), Expect = 1.260e-9
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:    7 MVAILRNDGSPAALADRCRGWIGAAPGAEQMAERAVMAAIDDWHFDTTSRTTTVVESSDDDITVVDVATDRGRWRVEVETGRAVPTIACGVAGGLPAKPGAEWRVRSI 330
            + +I+ + G+       CRGW GA+PG EQ+AERAV+  +  W  +   R   V E       V +VA     W V+++  R VP+I+C   GGLP K   E+ V S+
Sbjct:  208 LESIMESSGNALDFDAHCRGWWGASPGPEQIAERAVLTRVG-WALNDLPRNIVVREVPGG--WVAEVAVTGKTWEVKIKKRRVVPSISCRSGGGLPTKLHTEYLVTSV 312
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BLAST of mRNA_M-pyrifera_M_contig90214.20918.1 vs. uniprot
Match: A0A351ENQ2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A351ENQ2_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 8.570e-6
Identity = 39/98 (39.80%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:   46 LADRCRGWIGAAPGAEQMAERAVMAAIDDWHFDTTSRTTTVVESSDDD-ITVVDVATDRGRWRVEVETGRAVPTIACGVAGGLPAKPGAE--WRVRSI 330
            +++  RGW GA  G  Q+AE AV A      F  T      +E +D    +   V +D   W V V   RA+P+IAC  AGGLPAKPG E  W +  I
Sbjct:  215 VSNHARGWWGAKVGPAQVAECAVRAERAGAGF--TEPHIEPIEGNDGTPASHFRVTSDDTSWDVHVRVKRAIPSIACETAGGLPAKPGREFAWSIERI 310
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90214.20918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2D8LXA9_9ACTN2.630e-2250.45Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2E9XBI9_9ACTN1.260e-936.11Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A351ENQ2_9ACTN8.570e-639.80Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90214contigM-pyrifera_M_contig90214:2..346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.8971741-UTR-M-pyrifera_M_contig90214:1..71622816813.8971741-UTR-M-pyrifera_M_contig90214:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90214 2..7 +
1692278193.9458969-UTR-M-pyrifera_M_contig90214:1..71692278193.9458969-UTR-M-pyrifera_M_contig90214:1..7Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90214 2..7 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.9083147-CDS-M-pyrifera_M_contig90214:7..3461622816813.9083147-CDS-M-pyrifera_M_contig90214:7..346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90214 8..346 +
1692278193.955448-CDS-M-pyrifera_M_contig90214:7..3461692278193.955448-CDS-M-pyrifera_M_contig90214:7..346Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90214 8..346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90214.20918.1prot_M-pyrifera_M_contig90214.20918.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90214 8..346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90214.20918.1

>prot_M-pyrifera_M_contig90214.20918.1 ID=prot_M-pyrifera_M_contig90214.20918.1|Name=mRNA_M-pyrifera_M_contig90214.20918.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MVAILRNDGSPAALADRCRGWIGAAPGAEQMAERAVMAAIDDWHFDTTSR
TTTVVESSDDDITVVDVATDRGRWRVEVETGRAVPTIACGVAGGLPAKPG
AEWRVRSITRAE*
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mRNA from alignment at M-pyrifera_M_contig90214:2..346+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90214.20918.1 ID=mRNA_M-pyrifera_M_contig90214.20918.1|Name=mRNA_M-pyrifera_M_contig90214.20918.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig90214:2..346+ (Macrocystis pyrifera P11B4 male)
GACGAGATGGTCGCCATCCTCCGCAATGACGGCAGCCCCGCTGCGCTCGC
CGACCGCTGCCGCGGCTGGATCGGAGCCGCTCCCGGCGCCGAGCAGATGG
CCGAACGCGCCGTCATGGCCGCCATCGACGACTGGCACTTCGACACCACG
TCGCGCACCACGACCGTGGTCGAGTCGAGCGACGACGACATCACGGTGGT
CGACGTCGCGACCGATCGTGGTCGGTGGCGAGTCGAGGTCGAGACTGGAC
GGGCCGTGCCGACCATCGCGTGCGGCGTCGCCGGTGGGTTGCCGGCCAAG
CCGGGCGCCGAGTGGCGAGTTCGCTCGATCACCCGAGCGGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90214:2..346+

>mRNA_M-pyrifera_M_contig90214.20918.1 ID=mRNA_M-pyrifera_M_contig90214.20918.1|Name=mRNA_M-pyrifera_M_contig90214.20918.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig90214:2..346+ (Macrocystis pyrifera P11B4 male)
ATGGTCGCCATCCTCCGCAATGACGGCAGCCCCGCTGCGCTCGCCGACCG
CTGCCGCGGCTGGATCGGAGCCGCTCCCGGCGCCGAGCAGATGGCCGAAC
GCGCCGTCATGGCCGCCATCGACGACTGGCACTTCGACACCACGTCGCGC
ACCACGACCGTGGTCGAGTCGAGCGACGACGACATCACGGTGGTCGACGT
CGCGACCGATCGTGGTCGGTGGCGAGTCGAGGTCGAGACTGGACGGGCCG
TGCCGACCATCGCGTGCGGCGTCGCCGGTGGGTTGCCGGCCAAGCCGGGC
GCCGAGTGGCGAGTTCGCTCGATCACCCGAGCGGAATAGATGGTCGCCAT
CCTCCGCAATGACGGCAGCCCCGCTGCGCTCGCCGACCGCTGCCGCGGCT
GGATCGGAGCCGCTCCCGGCGCCGAGCAGATGGCCGAACGCGCCGTCATG
GCCGCCATCGACGACTGGCACTTCGACACCACGTCGCGCACCACGACCGT
GGTCGAGTCGAGCGACGACGACATCACGGTGGTCGACGTCGCGACCGATC
GTGGTCGGTGGCGAGTCGAGGTCGAGACTGGACGGGCCGTGCCGACCATC
GCGTGCGGCGTCGCCGGTGGGTTGCCGGCCAAGCCGGGCGCCGAGTGGCG
AGTTCGCTCGATCACCCGAGCGGAATAG
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