mRNA_M-pyrifera_M_contig90206.20915.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90206.20915.1
Unique NamemRNA_M-pyrifera_M_contig90206.20915.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90206.20915.1 vs. uniprot
Match: A0A5A8EHS8_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EHS8_CAFRO)

HSP 1 Score: 113 bits (282), Expect = 9.830e-27
Identity = 65/119 (54.62%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    1 AQALEAAHLDTAEVALAAVGALDKLAFVLHLRDIRRAEHRSSEMALYRRLPDDAERILLQASPPLHYHAVKLNIRLLRWERALEIAKRAGPK-----LVEVLCHYRARYLKQAQTEEHI 342
            A AL A+ LDTAE+ALA++G  DKLAFVLH+RD+   + R++EMAL+RR PD+AE IL+QASPPL Y AVKLN+RL RWERAL +A+          L E++   R R L     EE I
Sbjct:  720 AMALNASQLDTAEIALASLGMADKLAFVLHVRDVPSEDGRAAEMALFRRCPDEAEAILMQASPPLVYRAVKLNVRLFRWERALALAREHDASSGKGGLTELVVAARQRLLDALGREETI 838          
BLAST of mRNA_M-pyrifera_M_contig90206.20915.1 vs. uniprot
Match: A0A6U1NNZ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NNZ0_9STRA)

HSP 1 Score: 107 bits (267), Expect = 8.350e-26
Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = 1
Query:    1 AQALEAAHLDTAEVALAAVGALDKLAFVLHLRDIRRAEHRSSEMALYRRLPDDAERILLQASPPLHYHAVKLNIRLLRWERALEIAKRAGPKLVEVLCHYRARYLKQAQTEE 336
            A AL   +L+TAE+ALAAV  +DKL ++L+++DI   E R++EM LY+R PD+AE ILLQASPPL Y A+KLNIRL RW RALE+A +     V+ +  YR R+L+  + +E
Sbjct:  162 AMALHGFNLETAEIALAAVKEVDKLQYILYIKDIPSQEGRNAEMMLYKRCPDEAENILLQASPPLTYRAIKLNIRLYRWNRALELAVKYRSH-VDTVLGYRQRFLETFKKQE 272          
BLAST of mRNA_M-pyrifera_M_contig90206.20915.1 vs. uniprot
Match: F0Y8Y1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8Y1_AURAN)

HSP 1 Score: 110 bits (274), Expect = 1.170e-25
Identity = 64/120 (53.33%), Postives = 87/120 (72.50%), Query Frame = 1
Query:    1 AQALEAAHLDTAEVALAAVGALDKLAFVLHLRDIRRAEHRSSEMALYRRLPDDAERILLQASPPLHYHAVKLNIRLLRWERALEIAKRAGPKLVEVLCHYRARYL---KQAQTEEHIDAL 351
            A A+ A +LD AE+ALAAV  +DKL +VL+++ I   E +S+E+ALY+R PDDAERILLQA+PPL Y A+K+NIRL RW+RALEIA +    +  VL  YRA++L   K+ +T+E    L
Sbjct:  616 AMAINARNLDVAEIALAAVEEVDKLQYVLYMKKIPCPEAQSAELALYKRRPDDAERILLQATPPLLYRAIKMNIRLFRWDRALEIAVKHRSHVDTVLA-YRAKHLEAFKKTETDERFKQL 734          
BLAST of mRNA_M-pyrifera_M_contig90206.20915.1 vs. uniprot
Match: A0A7S2CV51_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CV51_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.840e-25
Identity = 56/104 (53.85%), Postives = 77/104 (74.04%), Query Frame = 1
Query:   25 LDTAEVALAAVGALDKLAFVLHLRDIRRAEHRSSEMALYRRLPDDAERILLQASPPLHYHAVKLNIRLLRWERALEIAKRAGPKLVEVLCHYRARYLKQAQTEE 336
            L+TAE+ALAA+  +DKL F+LH+++I   E R++E+ALYRR PD+AE ILLQA PPL Y A+K+NIRL RW RALE+A ++    V+ +  YR +YL Q   +E
Sbjct:  135 LETAEIALAALTEVDKLEFILHIKNIPSEEGRNAELALYRRCPDEAEGILLQARPPLTYRAIKMNIRLFRWGRALELAVKSRSH-VDTVLGYRQKYLDQFGKKE 237          
BLAST of mRNA_M-pyrifera_M_contig90206.20915.1 vs. uniprot
Match: A0A7S1C6H3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6H3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.500e-25
Identity = 58/115 (50.43%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 AQALEAAHLDTAEVALAAVGALDKLAFVLHLRDIRRAEHRSSEMALYRRLPDDAERILLQASPPLHYHAVKLNIRLLRWERALEIAKRAGPKLVEVLCHYRARYLKQAQTEEHID 345
            A A+   HL TAE+ALAA+  +DK+ ++ +++DI  AE R++E+ LYRRLP++AE++LLQA+PPL Y A+K+NIRL RW RALE+A +    +  VL  YR RYL  A+  E I+
Sbjct:  611 AMAINEKHLHTAEIALAAINEVDKVHYISYIKDIPSAEGRAAELMLYRRLPEEAEQVLLQAAPPLVYRAIKMNIRLFRWVRALELAVQYKTHVDTVLA-YRQRYLASAKRAETIE 724          
BLAST of mRNA_M-pyrifera_M_contig90206.20915.1 vs. uniprot
Match: A0A7S2WFK5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFK5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.550e-24
Identity = 59/112 (52.68%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    1 AQALEAAHLDTAEVALAAVGALDKLAFVLHLRDIRRAEHRSSEMALYRRLPDDAERILLQASPPLHYHAVKLNIRLLRWERALEIAKRAGPKLVEVLCHYRARYLKQAQTEE 336
            A +++   LDTAEVALA++   DKL F++HL+ +   E R++E+ALYRR PD+AE ILLQA PPL Y AV LNIRL RW RALEIA +   + V+ +  +R ++LKQA   E
Sbjct:  629 AMSIQNRQLDTAEVALASLNEADKLEFIVHLKKLPSEETRNAELALYRRCPDEAEAILLQARPPLIYRAVDLNIRLFRWGRALEIAVK-NKRHVDTVLGFRQKFLKQANKTE 739          
BLAST of mRNA_M-pyrifera_M_contig90206.20915.1 vs. uniprot
Match: A0A7S3USB3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USB3_HETAK)

HSP 1 Score: 99.4 bits (246), Expect = 4.780e-24
Identity = 55/114 (48.25%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    1 AQALEAAHLDTAEVALAAVGALDKLAFVLHLRDIRRAEHRSSEMALYRRLPDDAERILLQASPPLHYHAVKLNIRLLRWERALEIAKRAGPKLVEVLCHYRARYLKQAQTEEHI 342
            A AL   +L+TAE ALAAVG + KL +VLH++ +   E +++E+ LYRR PD AE ILLQA PPL Y A+K+N+RL RW RALE+A +     V+ +  YR R+L+     E +
Sbjct:   13 AMALHGNNLETAEAALAAVGEVHKLQYVLHIKHVPSVEGQNAELMLYRRQPDQAEAILLQAKPPLVYRAIKMNVRLFRWHRALELAVKHKSH-VDTVLGYRQRHLQALGAAEDL 125          
BLAST of mRNA_M-pyrifera_M_contig90206.20915.1 vs. uniprot
Match: A0A7S2G6X5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6X5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 9.020e-24
Identity = 56/104 (53.85%), Postives = 77/104 (74.04%), Query Frame = 1
Query:   25 LDTAEVALAAVGALDKLAFVLHLRDIRRAEHRSSEMALYRRLPDDAERILLQASPPLHYHAVKLNIRLLRWERALEIAKRAGPKLVEVLCHYRARYLKQAQTEE 336
            L+TAE+ALAA+  +DKL F+LH+++I   E R++E+ALYRR PD+AE ILLQA PPL Y A+K+NIRL RW RALE+A ++    V+ +  YR +YL Q   +E
Sbjct:  630 LETAEIALAALTEVDKLEFILHIKNIPSEEGRNAELALYRRCPDEAEGILLQARPPLTYRAIKMNIRLFRWGRALELAVKSRSH-VDTVLGYRQKYLDQFGKKE 732          
BLAST of mRNA_M-pyrifera_M_contig90206.20915.1 vs. uniprot
Match: A0A7S4E941_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E941_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.680e-23
Identity = 56/118 (47.46%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    7 ALEAAHLDTAEVALAAVGALDKLAFVLHLRDIRRAEHRSSEMALYRRLPDDAERILLQASPPLHYHAVKLNIRLLRWERALEIAKRAGPKLVEVLCHYRARYL---KQAQTEEHIDAL 351
            ALEA++LD AE++LAA+  +DKL ++L+++ I  AE R++E+ALY+R PDDAERILLQA+PPL Y A+K+ IR  +W++AL++A +    +  VL  YR++YL   K+ +T++    L
Sbjct:  615 ALEASNLDVAEISLAALREVDKLQYILYVKSIPSAEARNAELALYKRRPDDAERILLQATPPLVYRAIKMRIRAFQWDKALDLAVKHRSHVDTVLA-YRSKYLETYKKTETDDRFKQL 731          
BLAST of mRNA_M-pyrifera_M_contig90206.20915.1 vs. uniprot
Match: A0A812WKK8_9DINO (Ift80 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WKK8_9DINO)

HSP 1 Score: 102 bits (255), Expect = 4.240e-23
Identity = 60/115 (52.17%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    7 ALEAAHLDTAEVALAAVGALDKLAFVLHLRDIRRAEHRSSEMALYRRLPDD-AERILLQASPPLHYHAVKLNIRLLRWERALEIAKRAGPKLVEVLCHYRARYLKQAQTEEHIDA 348
            A+ + HLD AEV+LAA+G + KL ++ ++++I   E R++EMALYR+ P   AE ILLQASPPL Y A+KLN RL RWERAL IA+R G  L + +  YR R+L     EEH+ A
Sbjct:  578 AITSKHLDAAEVSLAALGDVAKLVYLQYIKEIPSPEGRNAEMALYRKEPPQVAEDILLQASPPLVYRAIKLNTRLYRWERALAIAERFGEHL-DTVRGYRQRHLDATHREEHLSA 691          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90206.20915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EHS8_CAFRO9.830e-2754.62Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A6U1NNZ0_9STRA8.350e-2652.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y8Y1_AURAN1.170e-2553.33Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2CV51_9STRA4.840e-2553.85Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1C6H3_9STRA5.500e-2550.43Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2WFK5_9STRA3.550e-2452.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3USB3_HETAK4.780e-2448.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G6X5_9STRA9.020e-2453.85Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4E941_9STRA1.680e-2347.46Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A812WKK8_9DINO4.240e-2352.17Ift80 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90206contigM-pyrifera_M_contig90206:2..352 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue6.8e-22
Seed eggNOG ortholog44056.XP_009036884.1
Preferred nameIFT80
KEGG koko:K19678
Hectar predicted targeting categoryother localisation
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006935,GO:0006996,GO:0007275,GO:0008150,GO:0009593,GO:0009605,GO:0009791,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010646,GO:0010648,GO:0015630,GO:0016043,GO:0017015,GO:0022607,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030512,GO:0030990,GO:0030992,GO:0032501,GO:0032502,GO:0032991,GO:0036064,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040017,GO:0040018,GO:0040024,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045927,GO:0048518,GO:0048519,GO:0048520,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051606,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090325,GO:0090326,GO:0097730,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903844,GO:1903845,GO:1905515
EggNOG free text desc.cilium assembly
EggNOG OGsCOG2319@1,KOG1524@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816813.7884188-CDS-M-pyrifera_M_contig90206:1..3521622816813.7884188-CDS-M-pyrifera_M_contig90206:1..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90206 2..352 +
1692278193.8957145-CDS-M-pyrifera_M_contig90206:1..3521692278193.8957145-CDS-M-pyrifera_M_contig90206:1..352Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90206 2..352 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90206.20915.1prot_M-pyrifera_M_contig90206.20915.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90206 2..352 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90206.20915.1

>prot_M-pyrifera_M_contig90206.20915.1 ID=prot_M-pyrifera_M_contig90206.20915.1|Name=mRNA_M-pyrifera_M_contig90206.20915.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
AQALEAAHLDTAEVALAAVGALDKLAFVLHLRDIRRAEHRSSEMALYRRL
PDDAERILLQASPPLHYHAVKLNIRLLRWERALEIAKRAGPKLVEVLCHY
RARYLKQAQTEEHIDAL
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mRNA from alignment at M-pyrifera_M_contig90206:2..352+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90206.20915.1 ID=mRNA_M-pyrifera_M_contig90206.20915.1|Name=mRNA_M-pyrifera_M_contig90206.20915.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig90206:2..352+ (Macrocystis pyrifera P11B4 male)
GCACAAGCGTTGGAAGCGGCACATCTTGATACTGCAGAAGTTGCTCTTGC AGCAGTTGGAGCATTGGACAAGCTGGCATTTGTCTTGCATCTTCGTGACA TTCGAAGAGCAGAACACCGATCATCAGAAATGGCTTTGTATCGAAGACTT CCTGATGATGCAGAACGTATTCTTCTCCAAGCTTCCCCTCCCCTCCATTA CCATGCAGTGAAGCTAAACATTCGTCTTCTTCGTTGGGAAAGAGCTTTGG AAATTGCAAAGCGAGCAGGACCAAAGCTCGTTGAAGTTTTGTGTCACTAC AGAGCTAGGTATCTCAAACAAGCCCAAACTGAAGAGCACATTGACGCACT C
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90206:2..352+

>mRNA_M-pyrifera_M_contig90206.20915.1 ID=mRNA_M-pyrifera_M_contig90206.20915.1|Name=mRNA_M-pyrifera_M_contig90206.20915.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig90206:2..352+ (Macrocystis pyrifera P11B4 male)
GCACAAGCGTTGGAAGCGGCACATCTTGATACTGCAGAAGTTGCTCTTGC
AGCAGTTGGAGCATTGGACAAGCTGGCATTTGTCTTGCATCTTCGTGACA
TTCGAAGAGCAGAACACCGATCATCAGAAATGGCTTTGTATCGAAGACTT
CCTGATGATGCAGAACGTATTCTTCTCCAAGCTTCCCCTCCCCTCCATTA
CCATGCAGTGAAGCTAAACATTCGTCTTCTTCGTTGGGAAAGAGCTTTGG
AAATTGCAAAGCGAGCAGGACCAAAGCTCGTTGAAGTTTTGTGTCACTAC
AGAGCTAGGTATCTCAAACAAGCCCAAACTGAAGAGCACATTGACGCACT
CGCACAAGCGTTGGAAGCGGCACATCTTGATACTGCAGAAGTTGCTCTTG
CAGCAGTTGGAGCATTGGACAAGCTGGCATTTGTCTTGCATCTTCGTGAC
ATTCGAAGAGCAGAACACCGATCATCAGAAATGGCTTTGTATCGAAGACT
TCCTGATGATGCAGAACGTATTCTTCTCCAAGCTTCCCCTCCCCTCCATT
ACCATGCAGTGAAGCTAAACATTCGTCTTCTTCGTTGGGAAAGAGCTTTG
GAAATTGCAAAGCGAGCAGGACCAAAGCTCGTTGAAGTTTTGTGTCACTA
CAGAGCTAGGTATCTCAAACAAGCCCAAACTGAAGAGCACATTGACGCAC
TC
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