mRNA_M-pyrifera_M_contig9015.20893.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9015.20893.1
Unique NamemRNA_M-pyrifera_M_contig9015.20893.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9015.20893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9015contigM-pyrifera_M_contig9015:2417..2737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size323
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.698931-UTR-M-pyrifera_M_contig9015:2416..24281622816812.698931-UTR-M-pyrifera_M_contig9015:2416..2428Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9015 2417..2428 +
1692278193.287992-UTR-M-pyrifera_M_contig9015:2416..24281692278193.287992-UTR-M-pyrifera_M_contig9015:2416..2428Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig9015 2417..2428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.7132828-CDS-M-pyrifera_M_contig9015:2428..27371622816812.7132828-CDS-M-pyrifera_M_contig9015:2428..2737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9015 2429..2737 +
1692278193.2978446-CDS-M-pyrifera_M_contig9015:2428..27371692278193.2978446-CDS-M-pyrifera_M_contig9015:2428..2737Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9015 2429..2737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9015.20893.1prot_M-pyrifera_M_contig9015.20893.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9015 2429..2737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9015.20893.1

>prot_M-pyrifera_M_contig9015.20893.1 ID=prot_M-pyrifera_M_contig9015.20893.1|Name=mRNA_M-pyrifera_M_contig9015.20893.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
MVVALWLPSNVGVVAQGRPRRNTCHALCTRVGLLRGVGRGCERGGNPPPS
MHDIEYTPIQLALHATRRTPHGASRFVQAISLWSVKTRRPPSRDCRDARV
DDT
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mRNA from alignment at M-pyrifera_M_contig9015:2417..2737+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9015.20893.1 ID=mRNA_M-pyrifera_M_contig9015.20893.1|Name=mRNA_M-pyrifera_M_contig9015.20893.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig9015:2417..2737+ (Macrocystis pyrifera P11B4 male)
CGGCGCGTGTGAATGGTCGTTGCTTTGTGGCTGCCTTCAAATGTTGGCGT
CGTTGCTCAAGGACGACCGCGTCGAAACACATGCCATGCTTTATGCACCC
GTGTTGGTTTGCTACGTGGTGTGGGACGCGGATGTGAGCGGGGGGGTAAC
CCCCCCCCCTCCATGCATGATATCGAGTACACCCCGATTCAGCTCGCCCT
ACATGCGACCCGCCGGACACCTCACGGCGCTTCACGCTTCGTGCAAGCAA
TATCTCTCTGGTCGGTGAAAACCCGACGTCCTCCGTCCCGGGATTGCAGG
GATGCGAGGGTCGATGATACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9015:2417..2737+

>mRNA_M-pyrifera_M_contig9015.20893.1 ID=mRNA_M-pyrifera_M_contig9015.20893.1|Name=mRNA_M-pyrifera_M_contig9015.20893.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig9015:2417..2737+ (Macrocystis pyrifera P11B4 male)
ATGGTCGTTGCTTTGTGGCTGCCTTCAAATGTTGGCGTCGTTGCTCAAGG
ACGACCGCGTCGAAACACATGCCATGCTTTATGCACCCGTGTTGGTTTGC
TACGTGGTGTGGGACGCGGATGTGAGCGGGGGGGTAACCCCCCCCCCTCC
ATGCATGATATCGAGTACACCCCGATTCAGCTCGCCCTACATGCGACCCG
CCGGACACCTCACGGCGCTTCACGCTTCGTGCAAGCAATATCTCTCTGGT
CGGTGAAAACCCGACGTCCTCCGTCCCGGGATTGCAGGGATGCGAGGGTC
GATGATACGATGGTCGTTGCTTTGTGGCTGCCTTCAAATGTTGGCGTCGT
TGCTCAAGGACGACCGCGTCGAAACACATGCCATGCTTTATGCACCCGTG
TTGGTTTGCTACGTGGTGTGGGACGCGGATGTGAGCGGGGGGGTAACCCC
CCCCCCTCCATGCATGATATCGAGTACACCCCGATTCAGCTCGCCCTACA
TGCGACCCGCCGGACACCTCACGGCGCTTCACGCTTCGTGCAAGCAATAT
CTCTCTGGTCGGTGAAAACCCGACGTCCTCCGTCCCGGGATTGCAGGGAT
GCGAGGGTCGATGATACG
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