mRNA_M-pyrifera_M_contig90128.20890.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90128.20890.1
Unique NamemRNA_M-pyrifera_M_contig90128.20890.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90128.20890.1 vs. uniprot
Match: A0A2P8W819_9CYAN (Uncharacterized protein n=1 Tax=filamentous cyanobacterium CCT1 TaxID=2107702 RepID=A0A2P8W819_9CYAN)

HSP 1 Score: 61.6 bits (148), Expect = 1.920e-8
Identity = 38/137 (27.74%), Postives = 67/137 (48.91%), Query Frame = 1 
Query:    1 KVRDSQVMRLALYSHLCKVEMRGSKAEWGVVLNVETKRCFAIPINDQLRFKATVELGLFAAVLKADREQKKTPIPVASP--CLNCRFGRPRPFIPSKSETVFFAEKISVYPHK--GHNGGLVHSDCGDKFEWLPPHR 399
            K+R     R+A Y  L + +  G  + +G++L   +    AI  N   R      L     V+K  +  ++ P P ++   C +C  G+P  + P +S+      +++  PH   G +G   HS+CGD+F+W+PPH+
Sbjct:  191 KIRGQHYARMAAYCRLIE-KAEGGSSPYGIILFGNSYDGIAIANNQGSRSAFHKGLREARQVIKGKQRWERDPSPPSTGTICSSCPLGKPFTYRPGESDNR--PGRLNTSPHLAFGDDGRAYHSECGDRFQWIPPHQ 324
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BLAST of mRNA_M-pyrifera_M_contig90128.20890.1 vs. uniprot
Match: UPI000A905590 (hypothetical protein n=1 Tax=Leptolyngbya sp. 'hensonii' TaxID=1922337 RepID=UPI000A905590)

HSP 1 Score: 55.8 bits (133), Expect = 2.220e-6
Identity = 42/140 (30.00%), Postives = 66/140 (47.14%), Query Frame = 1 
Query:    1 KVRDSQVMRLALYSHLCKVEMRGSKAEWGVVL-NVETKRCFAIPINDQLRFKATVELGLFAA---VLKADREQKKTPIPVASPCLNCRFGRPRPFIPSKSETVFFAEKISVYPHKGHNGGL----VHSDCGDKFEWLPPH 396
            K++     R+A Y HL + ++ G ++ +G++L   E      +   +    +A    GL  A   V  A   Q  +P P    CLNC  G+P  F   + E+     +++  P   H  GL     HS+CGD+F+WLPPH
Sbjct:  243 KLKGQHYARMAAYCHLLE-KVEGGRSPYGIILLGREVYEGITVSNREGSGSRAAFHKGLKEARHIVSSAKGGQTPSPPPNQRNCLNCPKGKP--FAYREGESNARTGRLNS-PVNFHISGLDRRPYHSECGDRFKWLPPH 378
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90128.20890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2P8W819_9CYAN1.920e-827.74Uncharacterized protein n=1 Tax=filamentous cyanob... [more]
UPI000A9055902.220e-630.00hypothetical protein n=1 Tax=Leptolyngbya sp. 'hen... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90128contigM-pyrifera_M_contig90128:370..789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size399
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.572142-CDS-M-pyrifera_M_contig90128:369..7681622816812.572142-CDS-M-pyrifera_M_contig90128:369..768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90128 370..768 -
1692278193.215052-CDS-M-pyrifera_M_contig90128:369..7681692278193.215052-CDS-M-pyrifera_M_contig90128:369..768Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90128 370..768 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.5836244-UTR-M-pyrifera_M_contig90128:768..7891622816812.5836244-UTR-M-pyrifera_M_contig90128:768..789Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90128 769..789 -
1692278193.233613-UTR-M-pyrifera_M_contig90128:768..7891692278193.233613-UTR-M-pyrifera_M_contig90128:768..789Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90128 769..789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90128.20890.1prot_M-pyrifera_M_contig90128.20890.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90128 370..768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90128.20890.1

>prot_M-pyrifera_M_contig90128.20890.1 ID=prot_M-pyrifera_M_contig90128.20890.1|Name=mRNA_M-pyrifera_M_contig90128.20890.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
MRLALYSHLCKVEMRGSKAEWGVVLNVETKRCFAIPINDQLRFKATVELG
LFAAVLKADREQKKTPIPVASPCLNCRFGRPRPFIPSKSETVFFAEKISV
YPHKGHNGGLVHSDCGDKFEWLPPHRYWQSAE*
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mRNA from alignment at M-pyrifera_M_contig90128:370..789-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90128.20890.1 ID=mRNA_M-pyrifera_M_contig90128.20890.1|Name=mRNA_M-pyrifera_M_contig90128.20890.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig90128:370..789- (Macrocystis pyrifera P11B4 male)
AAGGTTCGGGATTCTCAAGTCATGCGTCTCGCTTTGTATTCTCATCTCTG
CAAAGTTGAAATGCGAGGATCGAAAGCGGAATGGGGCGTCGTACTGAATG
TCGAAACGAAGCGCTGTTTCGCTATTCCCATCAACGATCAGCTGCGGTTT
AAGGCTACGGTAGAACTCGGGCTTTTTGCAGCGGTCTTGAAAGCTGATCG
TGAACAGAAAAAAACTCCGATCCCCGTTGCTTCGCCATGTTTGAATTGTC
GGTTTGGCAGACCCAGACCATTTATTCCGAGTAAATCAGAGACGGTTTTC
TTTGCTGAAAAGATCAGCGTCTATCCACACAAAGGGCATAACGGGGGACT
GGTTCACAGCGATTGCGGTGACAAGTTCGAGTGGCTTCCGCCCCACCGGT
ACTGGCAATCCGCTGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90128:370..789-

>mRNA_M-pyrifera_M_contig90128.20890.1 ID=mRNA_M-pyrifera_M_contig90128.20890.1|Name=mRNA_M-pyrifera_M_contig90128.20890.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig90128:370..789- (Macrocystis pyrifera P11B4 male)
ATGCGTCTCGCTTTGTATTCTCATCTCTGCAAAGTTGAAATGCGAGGATC
GAAAGCGGAATGGGGCGTCGTACTGAATGTCGAAACGAAGCGCTGTTTCG
CTATTCCCATCAACGATCAGCTGCGGTTTAAGGCTACGGTAGAACTCGGG
CTTTTTGCAGCGGTCTTGAAAGCTGATCGTGAACAGAAAAAAACTCCGAT
CCCCGTTGCTTCGCCATGTTTGAATTGTCGGTTTGGCAGACCCAGACCAT
TTATTCCGAGTAAATCAGAGACGGTTTTCTTTGCTGAAAAGATCAGCGTC
TATCCACACAAAGGGCATAACGGGGGACTGGTTCACAGCGATTGCGGTGA
CAAGTTCGAGTGGCTTCCGCCCCACCGGTACTGGCAATCCGCTGAGTAGA
TGCGTCTCGCTTTGTATTCTCATCTCTGCAAAGTTGAAATGCGAGGATCG
AAAGCGGAATGGGGCGTCGTACTGAATGTCGAAACGAAGCGCTGTTTCGC
TATTCCCATCAACGATCAGCTGCGGTTTAAGGCTACGGTAGAACTCGGGC
TTTTTGCAGCGGTCTTGAAAGCTGATCGTGAACAGAAAAAAACTCCGATC
CCCGTTGCTTCGCCATGTTTGAATTGTCGGTTTGGCAGACCCAGACCATT
TATTCCGAGTAAATCAGAGACGGTTTTCTTTGCTGAAAAGATCAGCGTCT
ATCCACACAAAGGGCATAACGGGGGACTGGTTCACAGCGATTGCGGTGAC
AAGTTCGAGTGGCTTCCGCCCCACCGGTACTGGCAATCCGCTGAGTAG
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