mRNA_M-pyrifera_M_contig90128.20889.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90128.20889.1
Unique NamemRNA_M-pyrifera_M_contig90128.20889.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90128.20889.1 vs. uniprot
Match: A0A2E0X6B7_9PLAN (Non-specific serine/threonine protein kinase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E0X6B7_9PLAN)

HSP 1 Score: 78.6 bits (192), Expect = 3.880e-15
Identity = 46/120 (38.33%), Postives = 67/120 (55.83%), Query Frame = 1
Query:    1 ADQFSLAVILFEMLTGTPPYDGYGGKAGH-RGFETVANCFAPPSKV-IGKTSIPRAIRREIDDVVGTALQLNPNDRFGNSRDFAQALGGVWQSLQAKSSDLAKHKTVGQTV---WNWFTR 345
            AD FSLAV+ FE+L    PYDG GG AGH    +   + + PPSK+ +    IP++  R ID+++ TALQL+P+DRF + + +     G W    + S D  K   V + V    +W +R
Sbjct:  151 ADYFSLAVVCFEVLALQLPYDGLGGAAGHFADSDESESLYIPPSKLSLDADKIPKSAWRSIDNLLETALQLDPDDRFADPKAWL----GAWNEAASHSRDTPKLGPVNKWVIRCLDWLSR 266          
BLAST of mRNA_M-pyrifera_M_contig90128.20889.1 vs. uniprot
Match: A0A2G1W7Y3_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1W7Y3_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 3.690e-14
Identity = 44/113 (38.94%), Postives = 60/113 (53.10%), Query Frame = 1
Query:    1 ADQFSLAVILFEMLTGTPPYDGYGGKAG----HRGFETVANCFAPPSKVIGKTSIPRAIRREIDDVVGTALQLNPNDRFGNSRDFAQALGGVWQSLQAKSSDLAKHKTVGQTV 327
            +DQFSL+++LFEMLTG  P+ G GG+AG     +GFE      AP +K   +  +PR   R IDDVV   L L+P+ RF  S  +  A+  V Q L+   S      T+    
Sbjct:  206 SDQFSLSIVLFEMLTGELPFQGMGGRAGWAEYKKGFERAYE--APSAKSNQRRQLPRRAWRVIDDVVREGLSLDPDGRFATSNAWRDAIDHVTQVLRQAESASRFESTIADVA 316          
BLAST of mRNA_M-pyrifera_M_contig90128.20889.1 vs. uniprot
Match: UPI0019992A4C (Protein kinase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI0019992A4C)

HSP 1 Score: 76.3 bits (186), Expect = 5.100e-14
Identity = 44/118 (37.29%), Postives = 66/118 (55.93%), Query Frame = 1
Query:    1 ADQFSLAVILFEMLTGTPPYDGYGGKAGHRGFETVANC-FAPPSKVIGKTS-IPRAIRREIDDVVGTALQLNPNDRFGNSRDFAQALGGVWQSLQAKSSDLAKHKTVGQT---VWNWF 339
            AD FSLAV+ +E+LT   PYDG GG+AG   + + ++  + PPS +  + S + R+I + IDD++G ALQL P  RF +  ++  A    W SL        +H  + Q    V +WF
Sbjct:  209 ADYFSLAVVCYELLTLQVPYDGLGGRAGSAQYRSESDSLYVPPSSISREASRLDRSIWQAIDDLLGRALQLEPEQRFASGPEWLAA----WDSLNDLIRRPPQHSPIDQLMLRVIDWF 322          
BLAST of mRNA_M-pyrifera_M_contig90128.20889.1 vs. uniprot
Match: A0A7W0MAT9_9PLAN (Protein kinase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7W0MAT9_9PLAN)

HSP 1 Score: 70.1 bits (170), Expect = 9.050e-12
Identity = 42/117 (35.90%), Postives = 60/117 (51.28%), Query Frame = 1
Query:    4 DQFSLAVILFEMLTGTPPYDGYGGKAGHRGF-ETVANCFAPPSKVIGK-TSIPRAIRREIDDVVGTALQLNPNDRFGNSRDFAQALGGVWQSLQAKSSDLAKHKTVGQTVWNWFTRP 348
            DQFS++VIL+E+LTG  PY G GGKAG   F E       PPS+V     ++PR+ R  +D++V   L L+P  R+ N   +   L       + K  +L   +     V  WF +P
Sbjct:  215 DQFSVSVILYELLTGKLPYGGLGGKAGRPEFIERAERSLQPPSQVNQACAALPRSFRNRLDEIVVQGLALDPAKRYANRHLWLDQLFEATARFRLKP-ELPPVERALTRVIAWFLKP 330          
BLAST of mRNA_M-pyrifera_M_contig90128.20889.1 vs. uniprot
Match: A0A5C6DGE1_9BACT (Serine/threonine-protein kinase PknF n=2 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6DGE1_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 2.030e-9
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 1
Query:    1 ADQFSLAVILFEMLTGTPPYDGYGGKAG-HRGFETVANCFAPPSKVIGKTS-IPRAIRREIDDVVGTALQLNPNDRFGNSRDFAQALGGVWQSL 276
            +DQFSLAV+ +E+LT T P+D  GG+AG     +     + PPSK++ +   +PR   + +D+   T+L L+P++RF   + +  A+  + +SL
Sbjct:  212 SDQFSLAVVAYELLTMTIPFDQLGGQAGLPELIKQTEKNYLPPSKLLHRAGKLPRQSIKRLDEYFNTSLALHPDNRFPTHQAWLSAIDDLHRSL 305          
BLAST of mRNA_M-pyrifera_M_contig90128.20889.1 vs. uniprot
Match: A0A2V7EMS1_9BACT (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7EMS1_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 1.030e-7
Identity = 39/117 (33.33%), Postives = 59/117 (50.43%), Query Frame = 1
Query:    1 ADQFSLAVILFEMLTGTPPYDGYGGKAGHRGFETVANCFAPPSKVIGKTSIPRAIRREIDDVVGTALQLNPNDRFGNSRDFAQALGGVWQSLQAKS-SDLAKHKTVGQTVWNWFTRP 348
            +D +SL  +LFEM+TG PPY      AG  GF       APP     +   P+ +    DD +  ALQ +P DR+ +++ FA AL     + +AK+  D  +H+ V Q   +   +P
Sbjct:  180 SDTYSLGCVLFEMVTGRPPY------AGKEGF-VKRFTEAPPKASAFRKDSPQWL----DDAIEGALQRDPQDRYPSAKGFADALREPDNTKRAKAVDDSGQHQAVSQESLSTHFQP 285          
BLAST of mRNA_M-pyrifera_M_contig90128.20889.1 vs. uniprot
Match: A0A2M8X2I4_9BURK (Non-specific serine/threonine protein kinase n=1 Tax=Acidovorax sp. 69 TaxID=2035202 RepID=A0A2M8X2I4_9BURK)

HSP 1 Score: 58.5 bits (140), Expect = 1.350e-7
Identity = 38/102 (37.25%), Postives = 51/102 (50.00%), Query Frame = 1
Query:    1 ADQFSLAVILFEMLTGTPPYDGYGGKAGHRGFETVANCFAPPSKVIGKTSIPRAIRR-----EIDDVVGTALQLNPNDRFGNSRDFAQALGGVWQSLQAKSS 291
            +D FSLAV+++E+LTG  P+DG                FA   K+  +T  P ++ R      +DDV+  AL   P DRF    DFAQAL    QSL  + S
Sbjct:  198 SDMFSLAVVVYELLTGRRPFDG-------------DTDFATLYKISHETPTPPSLLRASLPAHVDDVLLRALAKQPADRFATWDDFAQALLAAHQSLPRQRS 286          
BLAST of mRNA_M-pyrifera_M_contig90128.20889.1 vs. uniprot
Match: A0A2V7H845_9BACT (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7H845_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.400e-7
Identity = 35/86 (40.70%), Postives = 47/86 (54.65%), Query Frame = 1
Query:    1 ADQFSLAVILFEMLTGTPPYDGYGGKAGHRGFETVANCFAPPSKVIGKTSIPRAIRREIDDVVGTALQLNPNDRFGNSRDFAQALG 258
            +D +SL  +LFEMLTGTPP+ G        GF  V     PP  V   +S+ + +   +DDVV  AL  N +DRF  + + A ALG
Sbjct:  208 SDTYSLGCVLFEMLTGTPPFSG------KEGF--VKRFTEPPPLV---SSVRKGLPVWVDDVVSKALARNQSDRFQTAEELATALG 282          
BLAST of mRNA_M-pyrifera_M_contig90128.20889.1 vs. uniprot
Match: A0A3S0FK73_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A3S0FK73_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 1.940e-7
Identity = 35/109 (32.11%), Postives = 53/109 (48.62%), Query Frame = 1
Query:    1 ADQFSLAVILFEMLTGTPPYDGYGGKAGHRGFETVANCFAPPSKVIGKTSIPRAIRREIDDVVGTALQLNPNDRFGNSRDFAQALGGVWQSLQAKSSDLAKHKTVGQTV 327
            AD +SL  +LFE LTGTPP+       G     T+    +     + + S+ R+  RE++ +V T L  +P++R+    D A+ L  V Q  + K   LA  K   QT 
Sbjct:  212 ADIYSLGCVLFETLTGTPPF------IGENALTTLMKHKSATVPTLREASLGRSFSREMEQIVATMLAKSPDNRYQKITDVARDLASVMQGEKVKPK-LAASKPKQQTT 313          
BLAST of mRNA_M-pyrifera_M_contig90128.20889.1 vs. uniprot
Match: A0A7V6XGD2_9ACTN (Non-specific serine/threonine protein kinase n=1 Tax=Corynebacteriales bacterium TaxID=1957017 RepID=A0A7V6XGD2_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 1.950e-7
Identity = 36/109 (33.03%), Postives = 53/109 (48.62%), Query Frame = 1
Query:    1 ADQFSLAVILFEMLTGTPPYDGYGGKAGHRGFETVANCFAPPSKVIGKTSIPRAIRREIDDVVGTALQLNPNDRFGNSRDFAQALGGVWQSLQAKSSDLAKHKTVGQTV 327
            AD ++L  +L+E LTG PP++     A          C      V+  +SI   I  E+DDVV  AL  +P DR+ NS DF +A+  V     A    L  ++ +G T+
Sbjct:  195 ADIYALGCVLYECLTGKPPFEAETAVA--------VACKHVQDDVMPPSSINPDISPELDDVVMKALAKHPEDRYQNSGDFQEAIEEVLGETVATKVVLPDYQQMGATL 295          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90128.20889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E0X6B7_9PLAN3.880e-1538.33Non-specific serine/threonine protein kinase n=1 T... [more]
A0A2G1W7Y3_9BACT3.690e-1438.94Non-specific serine/threonine protein kinase n=1 T... [more]
UPI0019992A4C5.100e-1437.29Protein kinase n=1 Tax=Planctomycetaceae bacterium... [more]
A0A7W0MAT9_9PLAN9.050e-1235.90Protein kinase n=1 Tax=Planctomycetaceae bacterium... [more]
A0A5C6DGE1_9BACT2.030e-935.11Serine/threonine-protein kinase PknF n=2 Tax=Novip... [more]
A0A2V7EMS1_9BACT1.030e-733.33Non-specific serine/threonine protein kinase (Frag... [more]
A0A2M8X2I4_9BURK1.350e-737.25Non-specific serine/threonine protein kinase n=1 T... [more]
A0A2V7H845_9BACT1.400e-740.70Non-specific serine/threonine protein kinase (Frag... [more]
A0A3S0FK73_9BACT1.940e-732.11Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7V6XGD2_9ACTN1.950e-733.03Non-specific serine/threonine protein kinase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90128contigM-pyrifera_M_contig90128:1..354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.5364726-CDS-M-pyrifera_M_contig90128:0..3541622816812.5364726-CDS-M-pyrifera_M_contig90128:0..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90128 1..354 +
1692278193.2040706-CDS-M-pyrifera_M_contig90128:0..3541692278193.2040706-CDS-M-pyrifera_M_contig90128:0..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90128 1..354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90128.20889.1prot_M-pyrifera_M_contig90128.20889.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90128 1..354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90128.20889.1

>prot_M-pyrifera_M_contig90128.20889.1 ID=prot_M-pyrifera_M_contig90128.20889.1|Name=mRNA_M-pyrifera_M_contig90128.20889.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
ADQFSLAVILFEMLTGTPPYDGYGGKAGHRGFETVANCFAPPSKVIGKTS
IPRAIRREIDDVVGTALQLNPNDRFGNSRDFAQALGGVWQSLQAKSSDLA
KHKTVGQTVWNWFTRPT*
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mRNA from alignment at M-pyrifera_M_contig90128:1..354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90128.20889.1 ID=mRNA_M-pyrifera_M_contig90128.20889.1|Name=mRNA_M-pyrifera_M_contig90128.20889.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig90128:1..354+ (Macrocystis pyrifera P11B4 male)
GCGGATCAATTCTCGCTTGCGGTAATCCTGTTTGAAATGTTGACCGGAAC GCCACCCTACGATGGTTACGGTGGGAAAGCAGGACACCGAGGTTTCGAGA CGGTTGCGAATTGTTTCGCGCCTCCAAGCAAAGTGATCGGCAAAACGTCC ATTCCGCGAGCGATCAGGCGGGAAATCGACGATGTAGTGGGAACCGCGCT TCAGTTGAATCCGAACGATCGTTTCGGCAATTCGCGAGATTTCGCGCAGG CTCTTGGCGGCGTTTGGCAGTCGCTTCAGGCAAAATCGAGTGACCTAGCA AAGCACAAAACAGTGGGACAAACCGTCTGGAATTGGTTCACCCGTCCGAC TTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90128:1..354+

>mRNA_M-pyrifera_M_contig90128.20889.1 ID=mRNA_M-pyrifera_M_contig90128.20889.1|Name=mRNA_M-pyrifera_M_contig90128.20889.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig90128:1..354+ (Macrocystis pyrifera P11B4 male)
GCGGATCAATTCTCGCTTGCGGTAATCCTGTTTGAAATGTTGACCGGAAC
GCCACCCTACGATGGTTACGGTGGGAAAGCAGGACACCGAGGTTTCGAGA
CGGTTGCGAATTGTTTCGCGCCTCCAAGCAAAGTGATCGGCAAAACGTCC
ATTCCGCGAGCGATCAGGCGGGAAATCGACGATGTAGTGGGAACCGCGCT
TCAGTTGAATCCGAACGATCGTTTCGGCAATTCGCGAGATTTCGCGCAGG
CTCTTGGCGGCGTTTGGCAGTCGCTTCAGGCAAAATCGAGTGACCTAGCA
AAGCACAAAACAGTGGGACAAACCGTCTGGAATTGGTTCACCCGTCCGAC
TTGAGCGGATCAATTCTCGCTTGCGGTAATCCTGTTTGAAATGTTGACCG
GAACGCCACCCTACGATGGTTACGGTGGGAAAGCAGGACACCGAGGTTTC
GAGACGGTTGCGAATTGTTTCGCGCCTCCAAGCAAAGTGATCGGCAAAAC
GTCCATTCCGCGAGCGATCAGGCGGGAAATCGACGATGTAGTGGGAACCG
CGCTTCAGTTGAATCCGAACGATCGTTTCGGCAATTCGCGAGATTTCGCG
CAGGCTCTTGGCGGCGTTTGGCAGTCGCTTCAGGCAAAATCGAGTGACCT
AGCAAAGCACAAAACAGTGGGACAAACCGTCTGGAATTGGTTCACCCGTC
CGACTTGA
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