mRNA_M-pyrifera_M_contig90109.20884.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90109.20884.1
Unique NamemRNA_M-pyrifera_M_contig90109.20884.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A507DUD2_9FUNG (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DUD2_9FUNG)

HSP 1 Score: 130 bits (326), Expect = 4.800e-31
Identity = 71/187 (37.97%), Postives = 115/187 (61.50%), Query Frame = 1
Query:  109 IPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFAEAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLT--ARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663
            +P  ++ C+  L+ +L+QFGLE +LRLT +F  FA  A + +NA  +  LE+ ++         Q   + +GSLL ++D T+T FG RL+++W+  PL  +  + +R  AVEELL   A++ P  LV R++G + +LPDLER + R++Y +CAP+E +  + AF ++ TS+   A  R    +SPLL
Sbjct:  509 LPRRIITCLAALLKYLTQFGLENVLRLTKSFSPFASVAHMVLNANTLSSLEIFQN---------QTDYTEKGSLLWILDHTKTKFGRRLIKKWIGRPLVQIEQLQQRIDAVEELLVEDAKENP--LVRRIKGLVCQLPDLERSIVRIHYGRCAPSELYNTLLAFEKITTSVTPDAADR---FTSPLL 681          
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A7S4PJ16_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PJ16_GUITH)

HSP 1 Score: 125 bits (315), Expect = 1.390e-29
Identity = 78/186 (41.94%), Postives = 115/186 (61.83%), Query Frame = 1
Query:  106 RIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFAEAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663
            ++PA V+ C+G L+ +L +F LE +L+LT  F  F+  + ++++++ +  LELL +Q+           S  GSLL ++ +TRTAFG RLLR+W+ HPL     I  RH AVEEL+     PA L   ++  L  LPDLER + RL+Y+K AP E   ++K FL+L T L  A +A++S LSS LL
Sbjct:  359 QLPAAVISCLGGLLHYLKEFKLESVLQLTTNFWKFSSPSHMQLSSSVLSNLELLSTQE----------GSEHGSLLWLLKQTRTAFGARLLRQWITHPLLDKERIVARHEAVEELML---DPAPL-DELQQQLRGLPDLERALARLHYHKSAPNELLLLLKTFLQLSTLLKDA-KAQSSQLSSSLL 529          
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A8C6M718_NOTFU (MutS homolog 3 (E. coli) n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6M718_NOTFU)

HSP 1 Score: 124 bits (312), Expect = 3.290e-29
Identity = 79/226 (34.96%), Postives = 129/226 (57.08%), Query Frame = 1
Query:    7 VRLERH--SDFDHQRNMARVQRFFA----EDAEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663
            VR+E+   + F+    +  V RFF     ED+ + + +  + + V+ C+G L+ +L +F LE +LR   +F+  + E+  + +NAT ++ LE+L +Q  G +         +GSLL V+D TRTAFG RL+R+W+  PL  + +I +R  AV+E++   +  ++ +  VR  L  LPDLERG+C +Y+ K +  EF+ V     RL   L +   A  S +SSPLL
Sbjct:  313 VRIEKRDSAQFEFSAAVVTVVRFFGHAQEEDSRSLSSVASLESPVVCCLGPLIQYLQEFNLERVLRNESSFQRLSCESEGVTLNATTLRNLEILTNQTDGRV---------KGSLLWVLDHTRTAFGRRLMRKWVSRPLTDLHSISQRQEAVQEIM---ESDSLTLNSVRALLSHLPDLERGICSIYHKKSSTQEFYLVSSCLSRLGLELQSLLPAIRSQISSPLL 526          
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A0L0H3Q5_SPIPD (DNA mismatch repair protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H3Q5_SPIPD)

HSP 1 Score: 123 bits (308), Expect = 1.230e-28
Identity = 64/177 (36.16%), Postives = 105/177 (59.32%), Query Frame = 1
Query:   82 AEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFAEAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTS 612
            AE  ++   +P  V++C+  L+ +L QFGLE ILRLT  F +FA  A + +NA  +  LE+  +         Q     +GSLL ++D T+T FG RLL++W+  PL  +  + +R  AVEE++       + + R+RG + +LPDLE+ VCR++Y +C+P+E    + AF ++ +S
Sbjct:  506 AELYSQALSLPRRVIICLAALLKYLVQFGLEDILRLTKFFTAFASVAHMVLNANTLNSLEIFRN---------QTDFEEKGSLLWILDHTKTKFGQRLLKKWIGRPLVQLPDLQKRIDAVEEIIQGDAQGNVFIQRMRGLICQLPDLEKSVCRIHYGRCSPSELNNTLLAFEKIGSS 673          
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A1A8DFW2_9TELE (MutS homolog 3 (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8DFW2_9TELE)

HSP 1 Score: 121 bits (304), Expect = 3.930e-28
Identity = 71/197 (36.04%), Postives = 116/197 (58.88%), Query Frame = 1
Query:   76 EDAEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663
            ED+ + + +  + + V+ C+G L+ +L +F LE +LR   +F+  + E+  + +NAT ++ LE+L +Q  G +         +GSLL V+D TRTAFG RL+R+W+  PL  + +I +R  AV+E++   +  ++ +  VR  L  LPDLERG+C +Y+ K +  EF+ V     RL   L +   A  S +SSPLL
Sbjct:  184 EDSRSLSSVASMESPVVCCLGPLIQYLQEFNLERVLRNESSFQRLSCESEGVTLNATTLRNLEILTNQTDGRV---------KGSLLWVLDHTRTAFGRRLMRKWVSRPLTDLHSISQRQEAVQEIM---ESDSLTLNSVRALLSHLPDLERGICSIYHKKSSTQEFYLVSSCLSRLGLELQSLLPAIRSQISSPLL 368          
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A1A8CZT0_9TELE (DNA mismatch repair protein n=18 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8CZT0_9TELE)

HSP 1 Score: 121 bits (304), Expect = 4.160e-28
Identity = 71/197 (36.04%), Postives = 116/197 (58.88%), Query Frame = 1
Query:   76 EDAEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663
            ED+ + + +  + + V+ C+G L+ +L +F LE +LR   +F+  + E+  + +NAT ++ LE+L +Q  G +         +GSLL V+D TRTAFG RL+R+W+  PL  + +I +R  AV+E++   +  ++ +  VR  L  LPDLERG+C +Y+ K +  EF+ V     RL   L +   A  S +SSPLL
Sbjct:  453 EDSRSLSSVASMESPVVCCLGPLIQYLQEFNLERVLRNESSFQRLSCESEGVTLNATTLRNLEILTNQTDGRV---------KGSLLWVLDHTRTAFGRRLMRKWVSRPLTDLHSISQRQEAVQEIM---ESDSLTLNSVRALLSHLPDLERGICSIYHKKSSTQEFYLVSSCLSRLGLELQSLLPAIRSQISSPLL 637          
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A8C5FGK2_GADMO (MutS homolog 3 (E. coli) n=8 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FGK2_GADMO)

HSP 1 Score: 119 bits (299), Expect = 1.900e-27
Identity = 80/218 (36.70%), Postives = 120/218 (55.05%), Query Frame = 1
Query:   25 SDFDHQRNMARVQRFFAEDAEARAR----LERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663
            ++F+    M  V  F+    +  +R    +  + ++V+ C+G L+ +L +F LE +L    +FR  + E+  L ++AT ++ LE+  +Q  G L         RGSLL V+D TRTAFG RLLRRW+  PL  + +I  R  AV E+L + D  A+  A +R  L  LPDLERG+C +Y+ KC+  EF+ +  +  RL   L     A  S LSS LL
Sbjct:  303 AEFEFPSAMNTVTEFYCNSPDTGSRSLSSVASLESQVICCLGPLIQYLREFNLERVLLNDSSFRCLSTESQGLALSATTLRNLEIFSNQTDGGL---------RGSLLWVLDHTRTAFGRRLLRRWVSQPLTDLRSISDRQDAVCEILQS-DSAAL--AAIRSLLVHLPDLERGICSIYHTKCSTQEFYLICSSLSRLGLELKALIPAIQSQLSSSLL 508          
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A669DVK0_ORENI (MutS homolog 3 (E. coli) n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=A0A669DVK0_ORENI)

HSP 1 Score: 119 bits (297), Expect = 3.540e-27
Identity = 76/226 (33.63%), Postives = 127/226 (56.19%), Query Frame = 1
Query:    7 VRLERH--SDFDHQRNMARVQRFF----AEDAEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663
            VR+ER   ++F+    M  +  F+    A+ + + + +  + + V+ C+G L+ +L +F LE +LR   +FR    E+  + ++A+ ++ LE+L +Q  G         S +GSLL V+D TRT FG RL+R+W+  PL  + +I  R  AV+E+L   +  ++ +  +R  L RLPDLERG+C +Y+ K +  EF+ +  +  RL   L T   A  S +SS LL
Sbjct:  339 VRVERRDSAEFEFASAMNTLTSFYCHTQAKGSRSLSSVASLESPVISCLGPLIQYLQEFNLERVLRSESSFRRLTCESEIMTLSASTLRNLEILNNQTDG---------SVKGSLLWVLDHTRTPFGRRLMRKWVSQPLTDLQSISERQDAVQEIL---ESDSLTLNSIRSLLSRLPDLERGICSIYHKKSSTQEFYVISSSLSRLGLELQTLLPAMRSQISSVLL 552          
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: UPI0006AAF00F (DNA mismatch repair protein Msh3 n=1 Tax=Pundamilia nyererei TaxID=303518 RepID=UPI0006AAF00F)

HSP 1 Score: 118 bits (296), Expect = 4.810e-27
Identity = 77/226 (34.07%), Postives = 126/226 (55.75%), Query Frame = 1
Query:    7 VRLERH--SDFDHQRNMARVQRFF----AEDAEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663
            VR+ER   ++F+    M  V  F+    A+ + + + +  + + V+ C+G+L+ +L +F LE +LR   +FR    E+  + ++A  ++ LE+L +Q  G         S +GSLL V+D TRT FG RL+R+W+  PL  + +I  R  AV+E+L   +  ++ +  +R  L RLPDLERG+C +Y+ K +  EF+ +     RL   L T   A  S +SS LL
Sbjct:  442 VRVERRDSAEFEFASAMNTVTSFYCHIQAKGSRSLSSVASLESPVISCLGLLIQYLQEFNLERVLRSESSFRRLTCESEIMTLSAGTLRNLEILNNQTDG---------SVKGSLLWVLDHTRTPFGRRLMRKWVSQPLTDLQSISERQDAVQEIL---ESDSLTLNSIRSLLSRLPDLERGICSIYHKKSSTQEFYLITSNLSRLGLELQTLLPAMRSQISSGLL 655          
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A3P8PKS1_ASTCA (DNA mismatch repair protein n=22 Tax=Cichlidae TaxID=8113 RepID=A0A3P8PKS1_ASTCA)

HSP 1 Score: 118 bits (296), Expect = 4.890e-27
Identity = 77/226 (34.07%), Postives = 126/226 (55.75%), Query Frame = 1
Query:    7 VRLERH--SDFDHQRNMARVQRFF----AEDAEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663
            VR+ER   ++F+    M  V  F+    A+ + + + +  + + V+ C+G L+ +L +F LE +LR   +FR    E+  + ++A  ++ LE+L +Q  G         S +GSLL V+D TRT FG RL+R+W+  PL  + +I  R  AV+E+L   +  ++ +  +R  L RLPDLERG+C +Y+ K +  EF+ +  +  RL   L T   A  S +SS LL
Sbjct:  442 VRVERRDSAEFEFASAMNTVTSFYCHIQAKGSRSLSSVASLESPVISCLGPLIQYLQEFNLERVLRSESSFRRLTCESEIMTLSAGTLRNLEILNNQTDG---------SVKGSLLWVLDHTRTPFGRRLMRKWVSQPLTDLQSISERQDAVQEIL---ESDSLTLNSIRSLLSRLPDLERGICSIYHKKSSTQEFYLISSSLSRLGLELQTLQPAMRSQISSGLL 655          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A507DUD2_9FUNG4.800e-3137.97DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A7S4PJ16_GUITH1.390e-2941.94Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A8C6M718_NOTFU3.290e-2934.96MutS homolog 3 (E. coli) n=1 Tax=Nothobranchius fu... [more]
A0A0L0H3Q5_SPIPD1.230e-2836.16DNA mismatch repair protein n=2 Tax=Spizellomyces ... [more]
A0A1A8DFW2_9TELE3.930e-2836.04MutS homolog 3 (Fragment) n=1 Tax=Nothobranchius k... [more]
A0A1A8CZT0_9TELE4.160e-2836.04DNA mismatch repair protein n=18 Tax=Nothobranchiu... [more]
A0A8C5FGK2_GADMO1.900e-2736.70MutS homolog 3 (E. coli) n=8 Tax=Gadus morhua TaxI... [more]
A0A669DVK0_ORENI3.540e-2733.63MutS homolog 3 (E. coli) n=1 Tax=Oreochromis nilot... [more]
UPI0006AAF00F4.810e-2734.07DNA mismatch repair protein Msh3 n=1 Tax=Pundamili... [more]
A0A3P8PKS1_ASTCA4.890e-2734.07DNA mismatch repair protein n=22 Tax=Cichlidae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90109contigM-pyrifera_M_contig90109:5..667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score125.2
Seed ortholog evalue3.9e-26
Seed eggNOG ortholog109760.SPPG_08780T0
Preferred nameMSH3
KEGG koko:K08736
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000217,GO:0000228,GO:0000280,GO:0000403,GO:0000404,GO:0000406,GO:0000710,GO:0000735,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006274,GO:0006275,GO:0006281,GO:0006298,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032135,GO:0032300,GO:0032302,GO:0032502,GO:0032505,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0035822,GO:0035825,GO:0035861,GO:0036094,GO:0042623,GO:0043111,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045165,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0060255,GO:0061500,GO:0061982,GO:0065007,GO:0070013,GO:0071170,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0090734,GO:0097159,GO:0097367,GO:0140013,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with msh2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. Msh3 provides substrate-binding and substrate specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions (By similarity)
EggNOG OGs3APFN@33154,3NUIG@4751,COG0249@1,KOG0218@2759
COG Functional cat.L
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons1
Model size663
Cds size663
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.3657837-CDS-M-pyrifera_M_contig90109:4..6671622816812.3657837-CDS-M-pyrifera_M_contig90109:4..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90109 5..667 -
1692278193.1160944-CDS-M-pyrifera_M_contig90109:4..6671692278193.1160944-CDS-M-pyrifera_M_contig90109:4..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90109 5..667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90109.20884.1prot_M-pyrifera_M_contig90109.20884.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90109 5..667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90109.20884.1

>prot_M-pyrifera_M_contig90109.20884.1 ID=prot_M-pyrifera_M_contig90109.20884.1|Name=mRNA_M-pyrifera_M_contig90109.20884.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=221bp
EAVRLERHSDFDHQRNMARVQRFFAEDAEARARLERIPAEVLVCVGVLVA
HLSQFGLEGILRLTDAFRSFAEAATLEMNATAVQQLELLESQDLGFLQAG
QAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEEL
LTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLR
LCTSLPTAAQARASGLSSPLL
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mRNA from alignment at M-pyrifera_M_contig90109:5..667-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90109.20884.1 ID=mRNA_M-pyrifera_M_contig90109.20884.1|Name=mRNA_M-pyrifera_M_contig90109.20884.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=663bp|location=Sequence derived from alignment at M-pyrifera_M_contig90109:5..667- (Macrocystis pyrifera P11B4 male)
GAGGCAGTGCGCCTGGAGCGCCACTCCGACTTTGACCACCAGCGCAACAT GGCGCGCGTGCAGCGGTTCTTCGCGGAGGATGCGGAGGCGCGGGCGCGCC TGGAGCGGATTCCGGCCGAGGTGCTCGTGTGCGTGGGAGTGCTCGTGGCG CACCTCTCGCAGTTTGGCCTCGAGGGAATCCTCCGCCTCACCGACGCCTT TCGGAGCTTTGCGGAGGCGGCGACGCTGGAGATGAACGCCACTGCGGTGC AGCAGCTGGAGCTGCTCGAAAGTCAAGACCTGGGCTTCCTGCAGGCGGGC CAGGCGGCCTCCTCCAGGCGGGGCTCGCTGCTGGCCGTCGTCGACCGCAC CCGCACTGCCTTTGGCGGCCGACTGCTGCGCCGTTGGCTCCTCCACCCCC TCTGCAGCGTCGCCGCGATCGGCCGCCGCCACGCCGCCGTGGAGGAGCTG CTGACGGCGCGTGACGGGCCGGCCATCCTAGTGGCCCGCGTGCGCGGCGC CCTCGAGCGGCTGCCCGACCTGGAGCGCGGCGTGTGCCGCCTCTACTACA ACAAGTGCGCGCCCGCCGAGTTCTTCGCAGTGATGAAGGCTTTCCTCCGC CTCTGTACGTCGCTGCCCACCGCCGCCCAGGCGCGGGCCTCGGGCCTCTC CTCGCCGCTCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90109:5..667-

>mRNA_M-pyrifera_M_contig90109.20884.1 ID=mRNA_M-pyrifera_M_contig90109.20884.1|Name=mRNA_M-pyrifera_M_contig90109.20884.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1326bp|location=Sequence derived from alignment at M-pyrifera_M_contig90109:5..667- (Macrocystis pyrifera P11B4 male)
GAGGCAGTGCGCCTGGAGCGCCACTCCGACTTTGACCACCAGCGCAACAT
GGCGCGCGTGCAGCGGTTCTTCGCGGAGGATGCGGAGGCGCGGGCGCGCC
TGGAGCGGATTCCGGCCGAGGTGCTCGTGTGCGTGGGAGTGCTCGTGGCG
CACCTCTCGCAGTTTGGCCTCGAGGGAATCCTCCGCCTCACCGACGCCTT
TCGGAGCTTTGCGGAGGCGGCGACGCTGGAGATGAACGCCACTGCGGTGC
AGCAGCTGGAGCTGCTCGAAAGTCAAGACCTGGGCTTCCTGCAGGCGGGC
CAGGCGGCCTCCTCCAGGCGGGGCTCGCTGCTGGCCGTCGTCGACCGCAC
CCGCACTGCCTTTGGCGGCCGACTGCTGCGCCGTTGGCTCCTCCACCCCC
TCTGCAGCGTCGCCGCGATCGGCCGCCGCCACGCCGCCGTGGAGGAGCTG
CTGACGGCGCGTGACGGGCCGGCCATCCTAGTGGCCCGCGTGCGCGGCGC
CCTCGAGCGGCTGCCCGACCTGGAGCGCGGCGTGTGCCGCCTCTACTACA
ACAAGTGCGCGCCCGCCGAGTTCTTCGCAGTGATGAAGGCTTTCCTCCGC
CTCTGTACGTCGCTGCCCACCGCCGCCCAGGCGCGGGCCTCGGGCCTCTC
CTCGCCGCTCCTCGAGGCAGTGCGCCTGGAGCGCCACTCCGACTTTGACC
ACCAGCGCAACATGGCGCGCGTGCAGCGGTTCTTCGCGGAGGATGCGGAG
GCGCGGGCGCGCCTGGAGCGGATTCCGGCCGAGGTGCTCGTGTGCGTGGG
AGTGCTCGTGGCGCACCTCTCGCAGTTTGGCCTCGAGGGAATCCTCCGCC
TCACCGACGCCTTTCGGAGCTTTGCGGAGGCGGCGACGCTGGAGATGAAC
GCCACTGCGGTGCAGCAGCTGGAGCTGCTCGAAAGTCAAGACCTGGGCTT
CCTGCAGGCGGGCCAGGCGGCCTCCTCCAGGCGGGGCTCGCTGCTGGCCG
TCGTCGACCGCACCCGCACTGCCTTTGGCGGCCGACTGCTGCGCCGTTGG
CTCCTCCACCCCCTCTGCAGCGTCGCCGCGATCGGCCGCCGCCACGCCGC
CGTGGAGGAGCTGCTGACGGCGCGTGACGGGCCGGCCATCCTAGTGGCCC
GCGTGCGCGGCGCCCTCGAGCGGCTGCCCGACCTGGAGCGCGGCGTGTGC
CGCCTCTACTACAACAAGTGCGCGCCCGCCGAGTTCTTCGCAGTGATGAA
GGCTTTCCTCCGCCTCTGTACGTCGCTGCCCACCGCCGCCCAGGCGCGGG
CCTCGGGCCTCTCCTCGCCGCTCCTC
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