mRNA_M-pyrifera_M_contig90109.20884.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A507DUD2_9FUNG (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DUD2_9FUNG) HSP 1 Score: 130 bits (326), Expect = 4.800e-31 Identity = 71/187 (37.97%), Postives = 115/187 (61.50%), Query Frame = 1 Query: 109 IPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFAEAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLT--ARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663 +P ++ C+ L+ +L+QFGLE +LRLT +F FA A + +NA + LE+ ++ Q + +GSLL ++D T+T FG RL+++W+ PL + + +R AVEELL A++ P LV R++G + +LPDLER + R++Y +CAP+E + + AF ++ TS+ A R +SPLL Sbjct: 509 LPRRIITCLAALLKYLTQFGLENVLRLTKSFSPFASVAHMVLNANTLSSLEIFQN---------QTDYTEKGSLLWILDHTKTKFGRRLIKKWIGRPLVQIEQLQQRIDAVEELLVEDAKENP--LVRRIKGLVCQLPDLERSIVRIHYGRCAPSELYNTLLAFEKITTSVTPDAADR---FTSPLL 681
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A7S4PJ16_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PJ16_GUITH) HSP 1 Score: 125 bits (315), Expect = 1.390e-29 Identity = 78/186 (41.94%), Postives = 115/186 (61.83%), Query Frame = 1 Query: 106 RIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFAEAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663 ++PA V+ C+G L+ +L +F LE +L+LT F F+ + ++++++ + LELL +Q+ S GSLL ++ +TRTAFG RLLR+W+ HPL I RH AVEEL+ PA L ++ L LPDLER + RL+Y+K AP E ++K FL+L T L A +A++S LSS LL Sbjct: 359 QLPAAVISCLGGLLHYLKEFKLESVLQLTTNFWKFSSPSHMQLSSSVLSNLELLSTQE----------GSEHGSLLWLLKQTRTAFGARLLRQWITHPLLDKERIVARHEAVEELML---DPAPL-DELQQQLRGLPDLERALARLHYHKSAPNELLLLLKTFLQLSTLLKDA-KAQSSQLSSSLL 529
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A8C6M718_NOTFU (MutS homolog 3 (E. coli) n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6M718_NOTFU) HSP 1 Score: 124 bits (312), Expect = 3.290e-29 Identity = 79/226 (34.96%), Postives = 129/226 (57.08%), Query Frame = 1 Query: 7 VRLERH--SDFDHQRNMARVQRFFA----EDAEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663 VR+E+ + F+ + V RFF ED+ + + + + + V+ C+G L+ +L +F LE +LR +F+ + E+ + +NAT ++ LE+L +Q G + +GSLL V+D TRTAFG RL+R+W+ PL + +I +R AV+E++ + ++ + VR L LPDLERG+C +Y+ K + EF+ V RL L + A S +SSPLL Sbjct: 313 VRIEKRDSAQFEFSAAVVTVVRFFGHAQEEDSRSLSSVASLESPVVCCLGPLIQYLQEFNLERVLRNESSFQRLSCESEGVTLNATTLRNLEILTNQTDGRV---------KGSLLWVLDHTRTAFGRRLMRKWVSRPLTDLHSISQRQEAVQEIM---ESDSLTLNSVRALLSHLPDLERGICSIYHKKSSTQEFYLVSSCLSRLGLELQSLLPAIRSQISSPLL 526
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A0L0H3Q5_SPIPD (DNA mismatch repair protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H3Q5_SPIPD) HSP 1 Score: 123 bits (308), Expect = 1.230e-28 Identity = 64/177 (36.16%), Postives = 105/177 (59.32%), Query Frame = 1 Query: 82 AEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFAEAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTS 612 AE ++ +P V++C+ L+ +L QFGLE ILRLT F +FA A + +NA + LE+ + Q +GSLL ++D T+T FG RLL++W+ PL + + +R AVEE++ + + R+RG + +LPDLE+ VCR++Y +C+P+E + AF ++ +S Sbjct: 506 AELYSQALSLPRRVIICLAALLKYLVQFGLEDILRLTKFFTAFASVAHMVLNANTLNSLEIFRN---------QTDFEEKGSLLWILDHTKTKFGQRLLKKWIGRPLVQLPDLQKRIDAVEEIIQGDAQGNVFIQRMRGLICQLPDLEKSVCRIHYGRCSPSELNNTLLAFEKIGSS 673
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A1A8DFW2_9TELE (MutS homolog 3 (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8DFW2_9TELE) HSP 1 Score: 121 bits (304), Expect = 3.930e-28 Identity = 71/197 (36.04%), Postives = 116/197 (58.88%), Query Frame = 1 Query: 76 EDAEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663 ED+ + + + + + V+ C+G L+ +L +F LE +LR +F+ + E+ + +NAT ++ LE+L +Q G + +GSLL V+D TRTAFG RL+R+W+ PL + +I +R AV+E++ + ++ + VR L LPDLERG+C +Y+ K + EF+ V RL L + A S +SSPLL Sbjct: 184 EDSRSLSSVASMESPVVCCLGPLIQYLQEFNLERVLRNESSFQRLSCESEGVTLNATTLRNLEILTNQTDGRV---------KGSLLWVLDHTRTAFGRRLMRKWVSRPLTDLHSISQRQEAVQEIM---ESDSLTLNSVRALLSHLPDLERGICSIYHKKSSTQEFYLVSSCLSRLGLELQSLLPAIRSQISSPLL 368
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A1A8CZT0_9TELE (DNA mismatch repair protein n=18 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8CZT0_9TELE) HSP 1 Score: 121 bits (304), Expect = 4.160e-28 Identity = 71/197 (36.04%), Postives = 116/197 (58.88%), Query Frame = 1 Query: 76 EDAEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663 ED+ + + + + + V+ C+G L+ +L +F LE +LR +F+ + E+ + +NAT ++ LE+L +Q G + +GSLL V+D TRTAFG RL+R+W+ PL + +I +R AV+E++ + ++ + VR L LPDLERG+C +Y+ K + EF+ V RL L + A S +SSPLL Sbjct: 453 EDSRSLSSVASMESPVVCCLGPLIQYLQEFNLERVLRNESSFQRLSCESEGVTLNATTLRNLEILTNQTDGRV---------KGSLLWVLDHTRTAFGRRLMRKWVSRPLTDLHSISQRQEAVQEIM---ESDSLTLNSVRALLSHLPDLERGICSIYHKKSSTQEFYLVSSCLSRLGLELQSLLPAIRSQISSPLL 637
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A8C5FGK2_GADMO (MutS homolog 3 (E. coli) n=8 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FGK2_GADMO) HSP 1 Score: 119 bits (299), Expect = 1.900e-27 Identity = 80/218 (36.70%), Postives = 120/218 (55.05%), Query Frame = 1 Query: 25 SDFDHQRNMARVQRFFAEDAEARAR----LERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663 ++F+ M V F+ + +R + + ++V+ C+G L+ +L +F LE +L +FR + E+ L ++AT ++ LE+ +Q G L RGSLL V+D TRTAFG RLLRRW+ PL + +I R AV E+L + D A+ A +R L LPDLERG+C +Y+ KC+ EF+ + + RL L A S LSS LL Sbjct: 303 AEFEFPSAMNTVTEFYCNSPDTGSRSLSSVASLESQVICCLGPLIQYLREFNLERVLLNDSSFRCLSTESQGLALSATTLRNLEIFSNQTDGGL---------RGSLLWVLDHTRTAFGRRLLRRWVSQPLTDLRSISDRQDAVCEILQS-DSAAL--AAIRSLLVHLPDLERGICSIYHTKCSTQEFYLICSSLSRLGLELKALIPAIQSQLSSSLL 508
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A669DVK0_ORENI (MutS homolog 3 (E. coli) n=1 Tax=Oreochromis niloticus TaxID=8128 RepID=A0A669DVK0_ORENI) HSP 1 Score: 119 bits (297), Expect = 3.540e-27 Identity = 76/226 (33.63%), Postives = 127/226 (56.19%), Query Frame = 1 Query: 7 VRLERH--SDFDHQRNMARVQRFF----AEDAEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663 VR+ER ++F+ M + F+ A+ + + + + + + V+ C+G L+ +L +F LE +LR +FR E+ + ++A+ ++ LE+L +Q G S +GSLL V+D TRT FG RL+R+W+ PL + +I R AV+E+L + ++ + +R L RLPDLERG+C +Y+ K + EF+ + + RL L T A S +SS LL Sbjct: 339 VRVERRDSAEFEFASAMNTLTSFYCHTQAKGSRSLSSVASLESPVISCLGPLIQYLQEFNLERVLRSESSFRRLTCESEIMTLSASTLRNLEILNNQTDG---------SVKGSLLWVLDHTRTPFGRRLMRKWVSQPLTDLQSISERQDAVQEIL---ESDSLTLNSIRSLLSRLPDLERGICSIYHKKSSTQEFYVISSSLSRLGLELQTLLPAMRSQISSVLL 552
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: UPI0006AAF00F (DNA mismatch repair protein Msh3 n=1 Tax=Pundamilia nyererei TaxID=303518 RepID=UPI0006AAF00F) HSP 1 Score: 118 bits (296), Expect = 4.810e-27 Identity = 77/226 (34.07%), Postives = 126/226 (55.75%), Query Frame = 1 Query: 7 VRLERH--SDFDHQRNMARVQRFF----AEDAEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663 VR+ER ++F+ M V F+ A+ + + + + + + V+ C+G+L+ +L +F LE +LR +FR E+ + ++A ++ LE+L +Q G S +GSLL V+D TRT FG RL+R+W+ PL + +I R AV+E+L + ++ + +R L RLPDLERG+C +Y+ K + EF+ + RL L T A S +SS LL Sbjct: 442 VRVERRDSAEFEFASAMNTVTSFYCHIQAKGSRSLSSVASLESPVISCLGLLIQYLQEFNLERVLRSESSFRRLTCESEIMTLSAGTLRNLEILNNQTDG---------SVKGSLLWVLDHTRTPFGRRLMRKWVSQPLTDLQSISERQDAVQEIL---ESDSLTLNSIRSLLSRLPDLERGICSIYHKKSSTQEFYLITSNLSRLGLELQTLLPAMRSQISSGLL 655
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Match: A0A3P8PKS1_ASTCA (DNA mismatch repair protein n=22 Tax=Cichlidae TaxID=8113 RepID=A0A3P8PKS1_ASTCA) HSP 1 Score: 118 bits (296), Expect = 4.890e-27 Identity = 77/226 (34.07%), Postives = 126/226 (55.75%), Query Frame = 1 Query: 7 VRLERH--SDFDHQRNMARVQRFF----AEDAEARARLERIPAEVLVCVGVLVAHLSQFGLEGILRLTDAFRSFA-EAATLEMNATAVQQLELLESQDLGFLQAGQAASSRRGSLLAVVDRTRTAFGGRLLRRWLLHPLCSVAAIGRRHAAVEELLTARDGPAILVARVRGALERLPDLERGVCRLYYNKCAPAEFFAVMKAFLRLCTSLPTAAQARASGLSSPLL 663 VR+ER ++F+ M V F+ A+ + + + + + + V+ C+G L+ +L +F LE +LR +FR E+ + ++A ++ LE+L +Q G S +GSLL V+D TRT FG RL+R+W+ PL + +I R AV+E+L + ++ + +R L RLPDLERG+C +Y+ K + EF+ + + RL L T A S +SS LL Sbjct: 442 VRVERRDSAEFEFASAMNTVTSFYCHIQAKGSRSLSSVASLESPVISCLGPLIQYLQEFNLERVLRSESSFRRLTCESEIMTLSAGTLRNLEILNNQTDG---------SVKGSLLWVLDHTRTPFGRRLMRKWVSQPLTDLQSISERQDAVQEIL---ESDSLTLNSIRSLLSRLPDLERGICSIYHKKSSTQEFYLISSSLSRLGLELQTLQPAMRSQISSGLL 655 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90109.20884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig90109.20884.1 >prot_M-pyrifera_M_contig90109.20884.1 ID=prot_M-pyrifera_M_contig90109.20884.1|Name=mRNA_M-pyrifera_M_contig90109.20884.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=221bp EAVRLERHSDFDHQRNMARVQRFFAEDAEARARLERIPAEVLVCVGVLVAback to top mRNA from alignment at M-pyrifera_M_contig90109:5..667- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig90109.20884.1 ID=mRNA_M-pyrifera_M_contig90109.20884.1|Name=mRNA_M-pyrifera_M_contig90109.20884.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=663bp|location=Sequence derived from alignment at M-pyrifera_M_contig90109:5..667- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig90109:5..667- >mRNA_M-pyrifera_M_contig90109.20884.1 ID=mRNA_M-pyrifera_M_contig90109.20884.1|Name=mRNA_M-pyrifera_M_contig90109.20884.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1326bp|location=Sequence derived from alignment at M-pyrifera_M_contig90109:5..667- (Macrocystis pyrifera P11B4 male)back to top |