mRNA_M-pyrifera_M_contig90073.20881.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90073.20881.1
Unique NamemRNA_M-pyrifera_M_contig90073.20881.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90073.20881.1 vs. uniprot
Match: UPI0018CA4537 (ankyrin repeat domain-containing protein n=1 Tax=Nocardioides luteus TaxID=1844 RepID=UPI0018CA4537)

HSP 1 Score: 57.4 bits (137), Expect = 4.820e-8
Identity = 41/107 (38.32%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:   31 LRSAIREGDLEVVRKALQGGVWVDERDGVGNTPLHIAATVGDGEEHIEIVKLLLTEGADVHACNHDHNSPLFNAASRNAVHHLENGRSFLRDTATVKLLIDAGADPN 351
            L  A+ EGD  VV + +  GV +   D +GNT L +A      +E IE+ +LLL  GA V   +   N+PL+ A     V   + G     D A V+LL+DAGADP+
Sbjct:   14 LHQAVVEGDASVVARLISDGVDLASADNMGNTALRLACQ----QERIEVSRLLLEAGAPVDPIDAYGNTPLWRA-----VFAFQGG-----DPALVRLLLDAGADPD 106
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BLAST of mRNA_M-pyrifera_M_contig90073.20881.1 vs. uniprot
Match: A0A5B1CC44_9BACT (Ankyrin repeats (3 copies) n=2 Tax=Rubripirellula obstinata TaxID=406547 RepID=A0A5B1CC44_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.830e-6
Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 1 
Query:   13 TWKAEVLRSAIREGDLEVVRKALQGGVWVDERDGV-GNTPLHIAATVGDGEEHIEIVKLLLTEGADVHACNHDHNSPLFNAASRNAVHHLENGRSFLRDTATVKLLIDAGADPN 351
            T+  +  R A  +G+L++VR A+Q G  V+  D   G T L +AA  G    H  +VK LL   ADV A + +  +PL +A + ++V              TV+LLID GAD N
Sbjct:   66 TYSDDAFRYAAHDGNLDLVRSAIQSGTDVNVADPTAGYTALLMAAYNG----HANVVKFLLENDADVDARDREGKTPLMHACTNSSVE-------------TVRLLIDGGADIN 162
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BLAST of mRNA_M-pyrifera_M_contig90073.20881.1 vs. uniprot
Match: A0A4R9ZGT7_9BACT (C-type cytochrome n=1 Tax=bacterium M00.F.Ca.ET.205.01.1.1 TaxID=2563914 RepID=A0A4R9ZGT7_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 2.760e-6
Identity = 43/113 (38.05%), Postives = 54/113 (47.79%), Query Frame = 1 
Query:   13 TWKAEVLRSAIREGDLEVVRKALQGGVWVDERDGVGNTPLHIAATVGDGEEHIEIVKLLLTEGADVHACNHDHNSPLFNAASRNAVHHLENGRSFLRDTATVKLLIDAGADPN 351
            T  A  +  A  +GDL  +  AL  G  VDE DG   TPL++A   G    H    KLL+  GADV+A      +PL   A   A+          R    +KLL+DAGADPN
Sbjct:   18 TSHAAAIHDAAVKGDLAAISAALDAGAGVDESDGKA-TPLYLAVRGG----HFAAAKLLIERGADVNAAP----TPLLGPALMLAL--------AKRRIDLIKLLLDAGADPN 113
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BLAST of mRNA_M-pyrifera_M_contig90073.20881.1 vs. uniprot
Match: A0A383ANL6_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383ANL6_9ZZZZ)

HSP 1 Score: 53.9 bits (128), Expect = 3.200e-6
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:   31 LRSAIREGDLEVVRKALQGGVWVDERDGVGNTPLHIAATVGDGEEHIEIVKLLLTEGADVHA 216
            LR AIREGD+E V++ L  G+ V+ +D  G  PLH+AA  G    H EI +LL+++ ADV+A
Sbjct:   14 LREAIREGDIEAVKRHLAAGMDVNAKDDNGWNPLHLAAENG----HKEIAELLISKSADVNA 71
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BLAST of mRNA_M-pyrifera_M_contig90073.20881.1 vs. uniprot
Match: A0A1J6I994_NICAT (Potassium channel n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1J6I994_NICAT)

HSP 1 Score: 52.8 bits (125), Expect = 1.630e-5
Identity = 25/62 (40.32%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   25 EVLRSAIREGDLEVVRKALQGGVWVDERDGVGNTPLHIAATVGDGEEHIEIVKLLLTEGADV 210
            ++L +A R+ DL ++++ L+ G+ VD +D  G+TP+H+A      E H+E+VKLLL  GA++
Sbjct:  654 DLLCTAARKNDLTIMKELLKHGLLVDSKDRHGSTPIHVATE----ENHVEMVKLLLINGAEI 711
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BLAST of mRNA_M-pyrifera_M_contig90073.20881.1 vs. uniprot
Match: A0A7S3ZW88_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW88_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 6.890e-5
Identity = 35/110 (31.82%), Postives = 55/110 (50.00%), Query Frame = 1 
Query:   31 LRSAIREGDLEVVRKALQGGVWVDERDG-VGNTPLHIAATVGDGEEHIEIVKLLLTEGADVHACNHDHNSPLFNAASRNAVHHLENGRSFLRDTATVKLLIDAGADPNFS 357
            +  A   GD++ +R+AL+ GV  +  D   G TPLH      +G + +  ++LL+  GA+V+  N  + +PL  A               L     V LL+DAGADPN++
Sbjct:    8 IHRAATSGDVDALRRALEDGVSPNAADPPYGFTPLHYLCGGVEGGDRVACIELLIASGANVNVGNSANVTPLHWA--------------ILSHPEFVPLLLDAGADPNYT 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90073.20881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
UPI0018CA45374.820e-838.32ankyrin repeat domain-containing protein n=1 Tax=N... [more]
A0A5B1CC44_9BACT1.830e-635.96Ankyrin repeats (3 copies) n=2 Tax=Rubripirellula ... [more]
A0A4R9ZGT7_9BACT2.760e-638.05C-type cytochrome n=1 Tax=bacterium M00.F.Ca.ET.20... [more]
A0A383ANL6_9ZZZZ3.200e-648.39Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A1J6I994_NICAT1.630e-540.32Potassium channel n=5 Tax=Nicotiana TaxID=4085 Rep... [more]
A0A7S3ZW88_9STRA6.890e-531.82Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90073contigM-pyrifera_M_contig90073:430..789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.2538235-CDS-M-pyrifera_M_contig90073:429..7891622816812.2538235-CDS-M-pyrifera_M_contig90073:429..789Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90073 430..789 +
1692278193.0535903-CDS-M-pyrifera_M_contig90073:429..7891692278193.0535903-CDS-M-pyrifera_M_contig90073:429..789Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90073 430..789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90073.20881.1prot_M-pyrifera_M_contig90073.20881.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90073 430..789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90073.20881.1

>prot_M-pyrifera_M_contig90073.20881.1 ID=prot_M-pyrifera_M_contig90073.20881.1|Name=mRNA_M-pyrifera_M_contig90073.20881.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
RTEETWKAEVLRSAIREGDLEVVRKALQGGVWVDERDGVGNTPLHIAATV
GDGEEHIEIVKLLLTEGADVHACNHDHNSPLFNAASRNAVHHLENGRSFL
RDTATVKLLIDAGADPNFSC
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mRNA from alignment at M-pyrifera_M_contig90073:430..789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90073.20881.1 ID=mRNA_M-pyrifera_M_contig90073.20881.1|Name=mRNA_M-pyrifera_M_contig90073.20881.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig90073:430..789+ (Macrocystis pyrifera P11B4 male)
CGCACGGAAGAAACGTGGAAGGCGGAAGTATTACGAAGTGCAATCCGTGA
GGGAGACCTCGAGGTGGTGCGAAAGGCTCTCCAAGGAGGTGTTTGGGTGG
ATGAAAGGGATGGGGTTGGAAACACACCATTGCATATTGCTGCGACAGTG
GGGGATGGCGAAGAGCATATTGAAATTGTCAAGCTCCTTTTGACGGAGGG
AGCAGATGTTCATGCTTGCAACCACGATCACAACTCCCCCCTTTTCAACG
CGGCCTCAAGGAATGCAGTGCATCACTTGGAAAATGGTCGCTCATTTCTT
CGCGACACAGCTACTGTAAAGTTGCTCATCGATGCAGGAGCAGACCCCAA
CTTTTCTTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90073:430..789+

>mRNA_M-pyrifera_M_contig90073.20881.1 ID=mRNA_M-pyrifera_M_contig90073.20881.1|Name=mRNA_M-pyrifera_M_contig90073.20881.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig90073:430..789+ (Macrocystis pyrifera P11B4 male)
CGCACGGAAGAAACGTGGAAGGCGGAAGTATTACGAAGTGCAATCCGTGA
GGGAGACCTCGAGGTGGTGCGAAAGGCTCTCCAAGGAGGTGTTTGGGTGG
ATGAAAGGGATGGGGTTGGAAACACACCATTGCATATTGCTGCGACAGTG
GGGGATGGCGAAGAGCATATTGAAATTGTCAAGCTCCTTTTGACGGAGGG
AGCAGATGTTCATGCTTGCAACCACGATCACAACTCCCCCCTTTTCAACG
CGGCCTCAAGGAATGCAGTGCATCACTTGGAAAATGGTCGCTCATTTCTT
CGCGACACAGCTACTGTAAAGTTGCTCATCGATGCAGGAGCAGACCCCAA
CTTTTCTTGCCGCACGGAAGAAACGTGGAAGGCGGAAGTATTACGAAGTG
CAATCCGTGAGGGAGACCTCGAGGTGGTGCGAAAGGCTCTCCAAGGAGGT
GTTTGGGTGGATGAAAGGGATGGGGTTGGAAACACACCATTGCATATTGC
TGCGACAGTGGGGGATGGCGAAGAGCATATTGAAATTGTCAAGCTCCTTT
TGACGGAGGGAGCAGATGTTCATGCTTGCAACCACGATCACAACTCCCCC
CTTTTCAACGCGGCCTCAAGGAATGCAGTGCATCACTTGGAAAATGGTCG
CTCATTTCTTCGCGACACAGCTACTGTAAAGTTGCTCATCGATGCAGGAG
CAGACCCCAACTTTTCTTGC
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