mRNA_M-pyrifera_M_contig90070.20880.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90070.20880.1
Unique NamemRNA_M-pyrifera_M_contig90070.20880.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90070.20880.1 vs. uniprot
Match: A0A7S1C9R4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9R4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.860e-22
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   16 AGRAWSVSELRGKSFEDLHGLWFVCLKEKNRLLSERLWYAQEGRFPPDGIRLRKVRKTMARIKVVLGERQRASEALLFA 252
            AGRAW  +ELR KSF+DLH LWFV LKEKN LL++R ++ Q G   PD  RL+KV+ +MARI+VVLGER+RA  A L A
Sbjct:   30 AGRAWRTAELRLKSFDDLHKLWFVLLKEKNVLLTQRTYFKQTGLTMPDPYRLKKVKLSMARIQVVLGERRRARAAALDA 108          
BLAST of mRNA_M-pyrifera_M_contig90070.20880.1 vs. uniprot
Match: A0A5A8CIA3_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CIA3_CAFRO)

HSP 1 Score: 95.5 bits (236), Expect = 5.720e-22
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   19 GRAWSVSELRGKSFEDLHGLWFVCLKEKNRLLSERLWYAQEGRFPPDGIRLRKVRKTMARIKVVLGERQRASEALLFA 252
            GR+W  +ELRGKSFEDLH LW+VCLKEKN L+++R++Y Q     PD  R+RKVRKTMARIK VL ER+ A +  + A
Sbjct:   32 GRSWRAAELRGKSFEDLHRLWWVCLKEKNALMTDRMYYNQVSVEMPDSSRVRKVRKTMARIKRVLSERKMAVDRAIAA 109          
BLAST of mRNA_M-pyrifera_M_contig90070.20880.1 vs. uniprot
Match: A0A812U425_9DINO (MRPL4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812U425_9DINO)

HSP 1 Score: 93.2 bits (230), Expect = 9.520e-21
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   22 RAWSVSELRGKSFEDLHGLWFVCLKEKNRLLSERLWYAQEGRFPPDGIRLRKVRKTMARIKVVLGERQRASEALLFA 252
            R+W  +ELRGKSFEDLH LW+VCLKEKN L+++R++Y Q     PD  R+RKVRKTMARIK VL ER+ A +  + A
Sbjct:   81 RSWRAAELRGKSFEDLHRLWWVCLKEKNALMTDRMYYNQVSVEMPDSSRVRKVRKTMARIKRVLSERKMAVDRAIAA 157          
BLAST of mRNA_M-pyrifera_M_contig90070.20880.1 vs. uniprot
Match: A0A7S0W7Y5_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W7Y5_9CRYP)

HSP 1 Score: 84.0 bits (206), Expect = 3.540e-18
Identity = 43/74 (58.11%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    7 FCRAGRAWSVSELRGKSFEDLHGLWFVCLKEKNRLLSERLWYAQEGRFPPDGIRLRKVRKTMARIKVVLGERQR 228
            F   GRAW   ELR KSFEDLH LW++CLKE+N L  ER      G    +  R RK+RKTM+RIKVVLGER+R
Sbjct:   65 FPAVGRAWKAEELRQKSFEDLHKLWWICLKERNSLAGERHQARANGLVMMNPTRWRKIRKTMSRIKVVLGERRR 138          
BLAST of mRNA_M-pyrifera_M_contig90070.20880.1 vs. uniprot
Match: L8GV09_ACACA (Mitochondrial 39S ribosomal protein L47 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GV09_ACACA)

HSP 1 Score: 80.5 bits (197), Expect = 3.050e-17
Identity = 42/70 (60.00%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   16 AGRAWSVSELRGKSFEDLHGLWFVCLKEKNRLLSERLWYAQEGRFPPDGIRLRKVRKTMARIKVVLGERQ 225
            AGRAW  SELR KSFEDLH LWFV  KE+N LL+E++    EG+         KVR++MARIK+VLGERQ
Sbjct:   17 AGRAWKASELRLKSFEDLHKLWFVLQKERNLLLTEKMLAKSEGKQMXXXXXXXKVRQSMARIKLVLGERQ 86          
BLAST of mRNA_M-pyrifera_M_contig90070.20880.1 vs. uniprot
Match: A0A7S0UCY3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UCY3_HEMAN)

HSP 1 Score: 82.4 bits (202), Expect = 3.480e-17
Identity = 42/74 (56.76%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    7 FCRAGRAWSVSELRGKSFEDLHGLWFVCLKEKNRLLSERLWYAQEGRFPPDGIRLRKVRKTMARIKVVLGERQR 228
            F   GRAW   ELR KSF+DLH LW++CLKE+N L  ER      G    +  R RK+RKTM+RIKVVLGER+R
Sbjct:  110 FPAVGRAWKADELRQKSFDDLHKLWWICLKERNSLAGERHQARANGLVMMNPSRWRKIRKTMSRIKVVLGERRR 183          
BLAST of mRNA_M-pyrifera_M_contig90070.20880.1 vs. uniprot
Match: A0A2V3J3H1_9FLOR (39S ribosomal protein L47, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3H1_9FLOR)

HSP 1 Score: 80.5 bits (197), Expect = 5.750e-17
Identity = 47/88 (53.41%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   13 RAGRAWSVSELRGKSFEDLHGLWFVCLKEKNRLLSERLWYAQEGRFPPDG-IRLRKVRKTMARIKVVLGER------QRASEALLFAR 255
            R GRAW  SELR KS+EDLH LWF+ LKE+N LLSE+ W     R   +G   L KV+++MAR+K V+GER      +RA EALL  R
Sbjct:   55 RTGRAWRTSELRLKSYEDLHKLWFILLKERNILLSEKAWCKTNSRHWVNGPSNLYKVKRSMARLKGVVGERTRAYKAKRAKEALLAER 142          
BLAST of mRNA_M-pyrifera_M_contig90070.20880.1 vs. uniprot
Match: A0A7S0M160_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M160_9CRYP)

HSP 1 Score: 81.3 bits (199), Expect = 5.940e-17
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 MAFCRAGRAWSVSELRGKSFEDLHGLWFVCLKEKNRLLSERLWYAQEGRFPPDGIRLRKVRKTMARIKVVLGERQRA 231
            M F   GRAW+ +ELR KSF+DLH LW+V LKE+N L +ER     +G    +  R RKVRK+MARIKVVLGER RA
Sbjct:  104 MTFPAVGRAWTAAELRLKSFDDLHKLWWVLLKERNSLATERAAARAKGLQLLNPRRWRKVRKSMARIKVVLGERSRA 180          
BLAST of mRNA_M-pyrifera_M_contig90070.20880.1 vs. uniprot
Match: A0A7S3CE46_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CE46_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 1.410e-16
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   19 GRAWSVSELRGKSFEDLHGLWFVCLKEKNRLLSERLWYAQEGRFPPDGIRLRKVRKTMARIKVVLGER---------QRASEALLFAR 255
            GRAW   ELR KSFEDLH LWFV LKEKN L+SER  +   G   P   R++KV+++MARIK VL ER         +R +EA+L A+
Sbjct:  108 GRAWEAKELRLKSFEDLHKLWFVLLKEKNVLVSERHRFNSRGLLMPQKQRIKKVKQSMARIKTVLRERALEMEDEEERREAEAILDAK 195          
BLAST of mRNA_M-pyrifera_M_contig90070.20880.1 vs. uniprot
Match: A0A0L0DJW8_THETB (Mitochondrial/chloroplast ribosomal protein L4/L29 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DJW8_THETB)

HSP 1 Score: 79.7 bits (195), Expect = 1.550e-16
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   19 GRAWSVSELRGKSFEDLHGLWFVCLKEKNRLLSERLWYAQEGRFPPDGIRLRKVRKTMARIKVVLGERQRASEA--LLFARGELGKRQVQEKLD 294
            GRAWS SELR KS E+LH LWFV L+E+N+L SER     + R      RL K RK+MARIK +LGER +A E+  LL  +    KR++Q ++D
Sbjct:   73 GRAWSASELRLKSLEELHALWFVLLRERNKLNSEREAARSQVRPMAAPHRLEKTRKSMARIKRILGERSQAVESARLLLRQRADAKRELQSRID 166          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90070.20880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C9R4_9STRA1.860e-2262.03Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5A8CIA3_CAFRO5.720e-2260.26Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A812U425_9DINO9.520e-2159.74MRPL4 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S0W7Y5_9CRYP3.540e-1858.11Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
L8GV09_ACACA3.050e-1760.00Mitochondrial 39S ribosomal protein L47 n=1 Tax=Ac... [more]
A0A7S0UCY3_HEMAN3.480e-1756.76Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A2V3J3H1_9FLOR5.750e-1753.4139S ribosomal protein L47, mitochondrial n=1 Tax=G... [more]
A0A7S0M160_9CRYP5.940e-1758.44Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S3CE46_9CHLO1.410e-1652.27Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A0L0DJW8_THETB1.550e-1651.06Mitochondrial/chloroplast ribosomal protein L4/L29... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90070contigM-pyrifera_M_contig90070:416..709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue2.2e-13
Seed eggNOG ortholog529818.AMSG_07512T0
Preferred nameMRPL47
KEGG koko:K17428
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG3331@1,KOG3331@2759
Ec32 ortholog descriptionRibosomal protein L47, mitochondrial
Ec32 orthologEc-16_004340.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko03011
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.2201638-CDS-M-pyrifera_M_contig90070:415..7091622816812.2201638-CDS-M-pyrifera_M_contig90070:415..709Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90070 416..709 -
1692278193.0362115-CDS-M-pyrifera_M_contig90070:415..7091692278193.0362115-CDS-M-pyrifera_M_contig90070:415..709Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90070 416..709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90070.20880.1prot_M-pyrifera_M_contig90070.20880.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90070 416..709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90070.20880.1

>prot_M-pyrifera_M_contig90070.20880.1 ID=prot_M-pyrifera_M_contig90070.20880.1|Name=mRNA_M-pyrifera_M_contig90070.20880.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MAFCRAGRAWSVSELRGKSFEDLHGLWFVCLKEKNRLLSERLWYAQEGRF
PPDGIRLRKVRKTMARIKVVLGERQRASEALLFARGELGKRQVQEKLD
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mRNA from alignment at M-pyrifera_M_contig90070:416..709-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90070.20880.1 ID=mRNA_M-pyrifera_M_contig90070.20880.1|Name=mRNA_M-pyrifera_M_contig90070.20880.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig90070:416..709- (Macrocystis pyrifera P11B4 male)
ATGGCGTTTTGTCGAGCAGGACGGGCGTGGAGCGTCTCGGAACTACGAGG CAAATCGTTTGAAGACCTGCACGGGCTATGGTTTGTGTGTTTGAAGGAAA AGAACCGGTTGTTGTCAGAGAGGTTGTGGTATGCGCAGGAAGGACGATTC CCTCCAGATGGAATTCGACTGCGCAAGGTGCGAAAAACCATGGCAAGGAT CAAAGTTGTGCTTGGCGAGCGTCAACGGGCGTCCGAAGCATTGTTGTTCG CACGTGGAGAGTTGGGCAAACGCCAGGTGCAAGAAAAGCTGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90070:416..709-

>mRNA_M-pyrifera_M_contig90070.20880.1 ID=mRNA_M-pyrifera_M_contig90070.20880.1|Name=mRNA_M-pyrifera_M_contig90070.20880.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig90070:416..709- (Macrocystis pyrifera P11B4 male)
ATGGCGTTTTGTCGAGCAGGACGGGCGTGGAGCGTCTCGGAACTACGAGG
CAAATCGTTTGAAGACCTGCACGGGCTATGGTTTGTGTGTTTGAAGGAAA
AGAACCGGTTGTTGTCAGAGAGGTTGTGGTATGCGCAGGAAGGACGATTC
CCTCCAGATGGAATTCGACTGCGCAAGGTGCGAAAAACCATGGCAAGGAT
CAAAGTTGTGCTTGGCGAGCGTCAACGGGCGTCCGAAGCATTGTTGTTCG
CACGTGGAGAGTTGGGCAAACGCCAGGTGCAAGAAAAGCTGGACATGGCG
TTTTGTCGAGCAGGACGGGCGTGGAGCGTCTCGGAACTACGAGGCAAATC
GTTTGAAGACCTGCACGGGCTATGGTTTGTGTGTTTGAAGGAAAAGAACC
GGTTGTTGTCAGAGAGGTTGTGGTATGCGCAGGAAGGACGATTCCCTCCA
GATGGAATTCGACTGCGCAAGGTGCGAAAAACCATGGCAAGGATCAAAGT
TGTGCTTGGCGAGCGTCAACGGGCGTCCGAAGCATTGTTGTTCGCACGTG
GAGAGTTGGGCAAACGCCAGGTGCAAGAAAAGCTGGAC
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