mRNA_M-pyrifera_M_contig90063.20877.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90063.20877.1
Unique NamemRNA_M-pyrifera_M_contig90063.20877.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90063.20877.1 vs. uniprot
Match: A0A7S3WML0_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WML0_EMIHU)

HSP 1 Score: 162 bits (409), Expect = 6.020e-44
Identity = 78/172 (45.35%), Postives = 108/172 (62.79%), Query Frame = 1
Query:    1 RQVYLTNWTGVPTAEPVARNQVHQSFFIANYNSQEAVDNDDGSSFWETSSSFFPYSGNGMKNDFGGSLNTHSGNVYAYIGRALGIVNQTPQTRDEFANNYVVLTGGDVGNFACSGDAMPIMANNSYFTQDGALSECKQTFKQWQSKGNEPGSEAAAWPEPADILARGKAVLG 516
            RQ +LT       +  +A  ++H +FFI NY+ QE VDNDDGS++++T  +F  Y G GMKNDFGG  N H  NVYAY+GR LG+ +Q P   D F +N +VLTG DVG FAC G A  ++ +N YFT  G+++ECK +   WQ +G + GS  A  P   +I+   + +LG
Sbjct:  382 RQPFLTTVRDGSASMTMAWREIHHNFFIDNYSPQEDVDNDDGSAYYKTHHNFLVYGGQGMKNDFGGHDNHHYSNVYAYVGRGLGVCSQRPGHEDRFYDNKLVLTGNDVGGFACDGAAKTVVHDNEYFTASGSIAECKMSLPDWQKRGEDKGSTVAKLPADKEIIGWARKLLG 553          
BLAST of mRNA_M-pyrifera_M_contig90063.20877.1 vs. uniprot
Match: R1F4M0_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F4M0_EMIHU)

HSP 1 Score: 140 bits (353), Expect = 2.040e-35
Identity = 66/138 (47.83%), Postives = 89/138 (64.49%), Query Frame = 1
Query:  103 EAVDNDDGSSFWETSSSFFPYSGNGMKNDFGGSLNTHSGNVYAYIGRALGIVNQTPQTRDEFANNYVVLTGGDVGNFACSGDAMPIMANNSYFTQDGALSECKQTFKQWQSKGNEPGSEAAAWPEPADILARGKAVLG 516
            E VDNDDGS++++T  +F  Y G GMKNDFGG  N H  NVYAY+GR LG+ +Q P   D F +N +VLTG DVG FAC G A  ++ +N YFT  G+++ECK +   WQ +G + GS  A  P   +I+   + +LG
Sbjct:  653 EDVDNDDGSAYYKTHHNFLVYGGQGMKNDFGGHDNHHYSNVYAYVGRGLGVCSQRPGHEDRFYDNKLVLTGNDVGGFACDGAAKTVVHDNEYFTASGSIAECKMSLPDWQKRGEDKGSTVAKLPADKEIIGWARKLLG 790          
BLAST of mRNA_M-pyrifera_M_contig90063.20877.1 vs. uniprot
Match: A0A7S1J9E8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J9E8_9EUGL)

HSP 1 Score: 124 bits (312), Expect = 3.370e-33
Identity = 65/153 (42.48%), Postives = 91/153 (59.48%), Query Frame = 1
Query:   64 VHQSFFIANYNSQEAVDNDDGSSFWETSSSFFPYSGNGMKNDFGGSLNTHSGNVYAYIGRALGIVNQTPQTRDEFANNYVVLT-GGDVGNFACSGDA--MPIMANNSYFTQDGALSECKQTFKQWQSKGNEPGSEAAAWPEPADILARGKAVL 513
            +H++F +ANY +QEAVDNDDGS+++        YSGNGMKNDFGG  N H  N+YAY+G+   I +     +D F NN V++   G+ G + C  DA  MP++ NNS  TQDG    C     +W  KG +  + A  WP  A I+ + +A+L
Sbjct:    6 LHRNFLVANYQAQEAVDNDDGSAWYXXXXXXLVYSGNGMKNDFGGHSNHHYSNLYAYVGQGFSICSVKAGQQDHFYNNTVIMMQSGNYGTWDCRLDASTMPVLHNNSILTQDGRAHMCDVPLHEWVKKGYDNHTTAGPWPSHAAIILQARALL 158          
BLAST of mRNA_M-pyrifera_M_contig90063.20877.1 vs. uniprot
Match: X6PBX3_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6PBX3_RETFI)

HSP 1 Score: 111 bits (278), Expect = 1.280e-25
Identity = 72/185 (38.92%), Postives = 100/185 (54.05%), Query Frame = 1
Query:    1 RQVYLTNWTGVPTAEPVARNQVHQSFFIANYNSQEAVDNDDGSSFWETSSSFFPYSGNGMKNDFGGSLNTHSGNVY------AYIGRALGIVNQTPQTRDEFANNYVVLTGG--DVGNFACSGD--AMPIMANNSYFTQDGALSE---CKQTFKQWQSKGN-EPGSEAAAWPEPADILARGKAVL 513
            RQVY+T           A +++  +FFIANYNSQEA+DNDDGS ++ T  +FF YSGNGMKNDFGG  N H  N+Y      +YIG+   I  Q     D + NN VVLT    + G+F C+      P++ NN   T  G  S    C    +++Q+K + + GS   +WP    +L +   +L
Sbjct:  300 RQVYVTEMRNGSPLVTKADDEISYNFFIANYNSQEAIDNDDGSCYYYTHHNFFVYSGNGMKNDFGGHDNKHEFNIYGMFLLTSYIGQGFSINAQLLGHNDAYFNNTVVLTSDIRNYGSFDCTSSQATWPVLGNNVVSTPSGNTSSTGLCDLPLQEFQNKFSADLGSVIESWPSDQALLQQATNLL 484          
BLAST of mRNA_M-pyrifera_M_contig90063.20877.1 vs. uniprot
Match: A0A7S0CN92_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CN92_9EUKA)

HSP 1 Score: 105 bits (263), Expect = 1.540e-25
Identity = 66/179 (36.87%), Postives = 97/179 (54.19%), Query Frame = 1
Query:    1 RQVYLTNWT-GVPTAEPVARNQVHQSFFIANYNSQEAVDNDDGSSFWETSSSFFPYSGNGMKNDFGGSLNTHSGNVYAYIGRALGIVNQTPQTRDEFANNYVVLTGGD-VGNFAC---SGDAMPIMANNSYFTQDGALSE-CKQTFKQWQSKGNEPGSEAAAWPEPADILARGKAVLGL 519
            RQ ++T    GV      A +++  +F + NY SQE +DNDDGSS++ T  +FF Y+  GMKNDFGG  N H  NVYAY  R  GI       +D F  N V+LT  +    + C   +  + P +  N  +T DG + + C Q  K+ Q+ G + G+  + WP    I+  G+++LGL
Sbjct:    7 RQPFITKVKDGVTPQLEKAFDEIRNNFIMGNYYSQEGIDNDDGSSYYNTHHNFFVYARAGMKNDFGGHDNYHHSNVYAYHSRGAGINGALRTHQDRFYLNKVILTNSNGYIKYDCKCNTTSSCPDLHANEIYTYDGTMLDICGQDLKERQNLGYDIGTTVSKWPSDEQIIYWGRSLLGL 185          
BLAST of mRNA_M-pyrifera_M_contig90063.20877.1 vs. uniprot
Match: A0A7S1IZ60_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IZ60_9EUGL)

HSP 1 Score: 103 bits (256), Expect = 2.240e-23
Identity = 67/199 (33.67%), Postives = 96/199 (48.24%), Query Frame = 1
Query:    1 RQVYLTNWTGVPTAEPVARNQVHQSFFIANYNSQEAVDNDDGSSFWETSSSFFPYSGNGMKNDFGGSLNTHSGNVYAYIGRALGIVNQTPQTRDEFANNYVVL--------------------------TGGDVGNFACSGDAMPIMANNSYFTQDGALSECKQTFKQWQSKGNEPGSEAAAWPEPADILARGKAVLGL 519
            RQ +     G PT  P A   + ++  +   N QEAVDNDDGS+++ET  +F P+S  G+K+DFGG  NTH  NVY    R + I  Q P   D F NN  VL                          T       A    A+P+M +N  +T DG  +E ++    WQ++G++ G+     PE  ++LA G+ VLG+
Sbjct:  111 RQPFQVLRDGRPTLIP-ATTVITRNLLLNEANPQEAVDNDDGSAYYETHHNFLPFSSGGLKSDFGGHDNTHHDNVYLNTDRCVYICAQLPGHVDRFYNNTCVLYARRPDYAKFGRPNHRALTNRRQPAATAAAARTEAAGPGALPVMHDNRVYTLDGEATEDQRPVSYWQARGHDVGTTVHPHPEEDELLAMGRRVLGM 308          
BLAST of mRNA_M-pyrifera_M_contig90063.20877.1 vs. uniprot
Match: A0A0M0K2I9_9EUKA (Pdz dhr glgf domain protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K2I9_9EUKA)

HSP 1 Score: 102 bits (255), Expect = 3.270e-22
Identity = 60/177 (33.90%), Postives = 101/177 (57.06%), Query Frame = 1
Query:    1 RQVYLTNWT---GVPTAEPVARNQVHQSFFIANYNSQEAVDNDDGSSFWETSSSFF-------PYSGNGMKNDFGGSLNTHSGNVYAYIGRALGIVNQTPQTRDEFANNYVVLTG-GDVGNFA-CSGDAMPIMANNSYFTQDGALSECKQTFKQWQSKGNEPGSEAAAWPEPADILA 495
            RQVY+ +     G PT +    + +  +F +ANY+S  A+DNDDGS++++T  + F        Y G+ +K+DFGG  N H  NV  +  +  GI +Q     D + +NY+ L+  G+ GN   C+G A  I+  N+ ++  G ++EC +    WQ++GN+ G++A  +P  A++LA
Sbjct:  748 RQVYVYDDAANGGAPTVQK-KNDTISFNFILANYHSSMAIDNDDGSAYYDTHDNVFISASFGADYGGDSLKSDFGGHSNFHHANVDLFWSKGFGICDQAIGYADGYYDNYLYLSSDGNYGNGQQCTGGAKTIVGGNTIWSPTGKITECGKDLADWQAEGNDVGTKALPYPADAEVLA 923          
BLAST of mRNA_M-pyrifera_M_contig90063.20877.1 vs. uniprot
Match: A0A7S4CIU9_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CIU9_9EUGL)

HSP 1 Score: 95.5 bits (236), Expect = 2.000e-21
Identity = 57/134 (42.54%), Postives = 76/134 (56.72%), Query Frame = 1
Query:    1 RQVYLTNWTGVPTAEPVARNQVHQSFFIANYNSQEAVDNDDGSSFWETSSSFFPYSGNGMKNDFGGSLNTHSGNVYAYIGRALGIVNQTPQTRDEFANNYVV-LTGGDVGNFAC--SGDAMPIMANNSYFTQDG 393
            RQ ++T+      +  +A   +H +FF+ANY +  AVDNDDGS+++ T  +F  YSGNGMKNDFGG  N H  NVYA+     GI +Q P   D   NNYVV LT    G + C  +   M  + +N  FT  G
Sbjct:   61 RQPFVTSVLSGKPSLLMAWRHIHHNFFVANYEAGWAVDNDDGSAYYYTHHNFMVYSGNGMKNDFGGHSNHHHNNVYAFTQSGFGICSQQPGHNDFXXNNYVVMLTNQAYGQWDCKLNPQTMIKLHDNQIFTPAG 194          
BLAST of mRNA_M-pyrifera_M_contig90063.20877.1 vs. uniprot
Match: A0A830HAG2_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HAG2_9CHLO)

HSP 1 Score: 99.4 bits (246), Expect = 3.920e-21
Identity = 61/177 (34.46%), Postives = 90/177 (50.85%), Query Frame = 1
Query:    1 RQVYLTNWTGVPTAEPVARNQVHQSFFIANYNSQEAVDNDDGSSFWETSSSFFPYSGNGMKNDFGGSLNTHSGNVYAYIGRALGIVNQTPQT-RDEFANNYVVLTGGDVGNFACSGDAMPI---MANNSYFTQDGALSECKQTFKQWQSKGNEPGSEAAAWPEPADILARGKAVLGL 519
            R  Y+ N  G  +  PV RN VH +  +A Y SQEA D DDGSS++    +   ++  G K+DFGG  N   GN+YAY+     +   T     + F +N  V    D     C     P    + NN  FT+ G L+ C  T +QW + G++ G+  +AWP  AD++A  + +LG+
Sbjct:  336 RVPYIHNLRGKSSVIPVFRN-VHNNLVLATYQSQEAFDTDDGSSYYYFHDNVELFADTGFKSDFGGRENKQWGNIYAYVNACWHLCCGTDWIYANAFRSNVCVFKNPDGYASTCDSKIAPNTWDVGNNRLFTKSGDLNVCNMTLQQWFAGGHDVGTTVSAWPTDADLIAWSRELLGM 511          
BLAST of mRNA_M-pyrifera_M_contig90063.20877.1 vs. uniprot
Match: A0A7S3BWF7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BWF7_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 1.140e-20
Identity = 57/164 (34.76%), Postives = 87/164 (53.05%), Query Frame = 1
Query:   52 ARNQVHQSFFIANYNSQEAVDNDDGSSFWETSSSFFPYSGNGMKNDFGGSLNTHSGNVYAY-IGRA--LGIVNQT--PQTRDEFANNYVVLT-GGDVGNFACSGDAMPIMANNSYFTQDG--ALSECKQTFKQWQSKGNEPGSEAAAWPEPADILARGKAVLGL 519
            A + +  +F IANYNSQEA+DNDD S + E   +FF Y  +G+K+ FGG       N+YA+ IG    +G  ++T  P   D FANN  ++   G      CSG  +P + NN+    +    ++ C   F  W   G + G+  +AWP  A+I++    +LG+
Sbjct:    4 ADSVIESNFIIANYNSQEAIDNDDCSEYMEHRYNFFVYGQSGLKSYFGGHDIASHDNIYAFTIGHCVNIGFGHETFLPGHEDTFANNTCIMKQSGPYLKMGCSGGTLPTLGNNAVHDPEPERGMTLCGANFSSWVKSGRDNGTTLSAWPPAAEIVSAATRLLGM 167          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90063.20877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A7S3WML0_EMIHU6.020e-4445.35Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
R1F4M0_EMIHU2.040e-3547.83Uncharacterized protein n=3 Tax=Emiliania huxleyi ... [more]
A0A7S1J9E8_9EUGL3.370e-3342.48Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
X6PBX3_RETFI1.280e-2538.92Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A7S0CN92_9EUKA1.540e-2536.87Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S1IZ60_9EUGL2.240e-2333.67Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0M0K2I9_9EUKA3.270e-2233.90Pdz dhr glgf domain protein n=1 Tax=Chrysochromuli... [more]
A0A7S4CIU9_9EUGL2.000e-2142.54Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A830HAG2_9CHLO3.920e-2134.46Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A7S3BWF7_9EUKA1.140e-2034.76Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90063contigM-pyrifera_M_contig90063:276..797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score143.7
Seed ortholog evalue8.3e-32
Seed eggNOG ortholog400682.PAC_15728530
Hectar predicted targeting categoryother localisation
EggNOG OGs294VB@1,2RBSW@2759,39Y68@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size522
Cds size522
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.11487-CDS-M-pyrifera_M_contig90063:275..7971622816812.11487-CDS-M-pyrifera_M_contig90063:275..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90063 276..797 -
1692278192.9888003-CDS-M-pyrifera_M_contig90063:275..7971692278192.9888003-CDS-M-pyrifera_M_contig90063:275..797Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90063 276..797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90063.20877.1prot_M-pyrifera_M_contig90063.20877.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90063 276..797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90063.20877.1

>prot_M-pyrifera_M_contig90063.20877.1 ID=prot_M-pyrifera_M_contig90063.20877.1|Name=mRNA_M-pyrifera_M_contig90063.20877.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
RQVYLTNWTGVPTAEPVARNQVHQSFFIANYNSQEAVDNDDGSSFWETSS
SFFPYSGNGMKNDFGGSLNTHSGNVYAYIGRALGIVNQTPQTRDEFANNY
VVLTGGDVGNFACSGDAMPIMANNSYFTQDGALSECKQTFKQWQSKGNEP
GSEAAAWPEPADILARGKAVLGL*
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mRNA from alignment at M-pyrifera_M_contig90063:276..797-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90063.20877.1 ID=mRNA_M-pyrifera_M_contig90063.20877.1|Name=mRNA_M-pyrifera_M_contig90063.20877.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig90063:276..797- (Macrocystis pyrifera P11B4 male)
CGGCAAGTGTACCTCACCAACTGGACGGGCGTGCCTACCGCCGAGCCAGT GGCACGCAACCAGGTGCACCAGAGCTTCTTCATCGCCAACTACAACAGCC AGGAGGCCGTGGACAATGACGACGGGTCCTCGTTTTGGGAGACCAGCTCC TCCTTCTTCCCGTACAGCGGGAACGGCATGAAGAACGACTTTGGAGGCTC CCTCAACACCCACTCTGGAAACGTCTACGCCTACATCGGCAGGGCGCTCG GCATCGTCAACCAGACCCCGCAAACCAGGGACGAGTTCGCAAACAACTAC GTCGTCCTCACCGGAGGAGACGTCGGCAACTTTGCGTGCTCCGGAGACGC CATGCCCATCATGGCCAACAACTCCTACTTCACCCAGGACGGCGCGCTCT CGGAGTGCAAGCAGACCTTTAAGCAGTGGCAAAGCAAAGGAAACGAACCG GGGTCCGAAGCAGCTGCCTGGCCAGAGCCAGCAGACATCCTCGCCAGAGG AAAAGCCGTGCTAGGACTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90063:276..797-

>mRNA_M-pyrifera_M_contig90063.20877.1 ID=mRNA_M-pyrifera_M_contig90063.20877.1|Name=mRNA_M-pyrifera_M_contig90063.20877.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig90063:276..797- (Macrocystis pyrifera P11B4 male)
CGGCAAGTGTACCTCACCAACTGGACGGGCGTGCCTACCGCCGAGCCAGT
GGCACGCAACCAGGTGCACCAGAGCTTCTTCATCGCCAACTACAACAGCC
AGGAGGCCGTGGACAATGACGACGGGTCCTCGTTTTGGGAGACCAGCTCC
TCCTTCTTCCCGTACAGCGGGAACGGCATGAAGAACGACTTTGGAGGCTC
CCTCAACACCCACTCTGGAAACGTCTACGCCTACATCGGCAGGGCGCTCG
GCATCGTCAACCAGACCCCGCAAACCAGGGACGAGTTCGCAAACAACTAC
GTCGTCCTCACCGGAGGAGACGTCGGCAACTTTGCGTGCTCCGGAGACGC
CATGCCCATCATGGCCAACAACTCCTACTTCACCCAGGACGGCGCGCTCT
CGGAGTGCAAGCAGACCTTTAAGCAGTGGCAAAGCAAAGGAAACGAACCG
GGGTCCGAAGCAGCTGCCTGGCCAGAGCCAGCAGACATCCTCGCCAGAGG
AAAAGCCGTGCTAGGACTCTAACGGCAAGTGTACCTCACCAACTGGACGG
GCGTGCCTACCGCCGAGCCAGTGGCACGCAACCAGGTGCACCAGAGCTTC
TTCATCGCCAACTACAACAGCCAGGAGGCCGTGGACAATGACGACGGGTC
CTCGTTTTGGGAGACCAGCTCCTCCTTCTTCCCGTACAGCGGGAACGGCA
TGAAGAACGACTTTGGAGGCTCCCTCAACACCCACTCTGGAAACGTCTAC
GCCTACATCGGCAGGGCGCTCGGCATCGTCAACCAGACCCCGCAAACCAG
GGACGAGTTCGCAAACAACTACGTCGTCCTCACCGGAGGAGACGTCGGCA
ACTTTGCGTGCTCCGGAGACGCCATGCCCATCATGGCCAACAACTCCTAC
TTCACCCAGGACGGCGCGCTCTCGGAGTGCAAGCAGACCTTTAAGCAGTG
GCAAAGCAAAGGAAACGAACCGGGGTCCGAAGCAGCTGCCTGGCCAGAGC
CAGCAGACATCCTCGCCAGAGGAAAAGCCGTGCTAGGACTCTAA
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