mRNA_M-pyrifera_M_contig90056.20874.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90056.20874.1
Unique NamemRNA_M-pyrifera_M_contig90056.20874.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90056.20874.1 vs. uniprot
Match: A0A2E7KGW1_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KGW1_9PLAN)

HSP 1 Score: 198 bits (503), Expect = 1.850e-64
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 MHWAVQMLLILWPFILIVGVFLCLHLITMCTGNSAPGWQLRCTECDRTRDAGEAGVTRIGAASIGKVTFGYCSECQGFRWIAIERKPNFEHASE 282
            MHWAVQMLLILWPFILIVGVFLCLHLITMCTGNSAPGWQLRCTECDRTRDAGEAGVTRIGAASIGKVTFGYCSECQGFRWIAIERKPNFEHASE
Sbjct:    1 MHWAVQMLLILWPFILIVGVFLCLHLITMCTGNSAPGWQLRCTECDRTRDAGEAGVTRIGAASIGKVTFGYCSECQGFRWIAIERKPNFEHASE 94
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BLAST of mRNA_M-pyrifera_M_contig90056.20874.1 vs. uniprot
Match: A0A2D5YYY0_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D5YYY0_9PLAN)

HSP 1 Score: 74.3 bits (181), Expect = 1.840e-15
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:  106 PGWQLRCTECDRTRDAGEAGVTRIGAASIGKVTFGYCSECQGFRWIAIERK 258
            PGW+ RCT+C +TRDAG AG+TRI AAS GKV  G+C  C+ +R IAIERK
Sbjct:   26 PGWEARCTKCGKTRDAGAAGITRIRAASAGKVVLGWCWGCRFWRMIAIERK 76
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BLAST of mRNA_M-pyrifera_M_contig90056.20874.1 vs. uniprot
Match: UPI00198B4A41 (Serine/threonine protein kinase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI00198B4A41)

HSP 1 Score: 73.6 bits (179), Expect = 3.390e-13
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:  103 APGWQLRCTECDRTRDAGEAGVTRIGAASIGKVTFGYCSECQGFRWIAIER 255
            APGW++RCT+C+R++  GE G  R+GAAS GK T  +CS+C+G RW AIER
Sbjct:  479 APGWRIRCTKCNRSKPLGEVGGIRMGAASRGKWTLAWCSQCRGLRWAAIER 529
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90056.20874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7KGW1_9PLAN1.850e-64100.00Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A2D5YYY0_9PLAN1.840e-1564.71Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
UPI00198B4A413.390e-1358.82Serine/threonine protein kinase n=1 Tax=Planctomyc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90056contigM-pyrifera_M_contig90056:375..659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size285
Cds size285
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816812.0174844-CDS-M-pyrifera_M_contig90056:374..6591622816812.0174844-CDS-M-pyrifera_M_contig90056:374..659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90056 375..659 +
1692278192.942484-CDS-M-pyrifera_M_contig90056:374..6591692278192.942484-CDS-M-pyrifera_M_contig90056:374..659Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90056 375..659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90056.20874.1prot_M-pyrifera_M_contig90056.20874.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90056 375..659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90056.20874.1

>prot_M-pyrifera_M_contig90056.20874.1 ID=prot_M-pyrifera_M_contig90056.20874.1|Name=mRNA_M-pyrifera_M_contig90056.20874.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
MHWAVQMLLILWPFILIVGVFLCLHLITMCTGNSAPGWQLRCTECDRTRD
AGEAGVTRIGAASIGKVTFGYCSECQGFRWIAIERKPNFEHASE*
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mRNA from alignment at M-pyrifera_M_contig90056:375..659+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90056.20874.1 ID=mRNA_M-pyrifera_M_contig90056.20874.1|Name=mRNA_M-pyrifera_M_contig90056.20874.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig90056:375..659+ (Macrocystis pyrifera P11B4 male)
ATGCATTGGGCAGTTCAGATGCTACTTATTCTGTGGCCGTTTATTCTCAT
CGTGGGCGTGTTTTTGTGTCTTCATCTCATCACCATGTGTACGGGGAATT
CCGCCCCGGGATGGCAATTACGCTGTACCGAATGTGATCGAACTCGTGAT
GCCGGTGAAGCGGGGGTGACTCGGATTGGTGCTGCCAGTATCGGAAAAGT
GACCTTTGGATACTGTAGCGAGTGCCAGGGCTTTCGCTGGATTGCCATCG
AACGGAAACCCAATTTTGAACATGCCAGTGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90056:375..659+

>mRNA_M-pyrifera_M_contig90056.20874.1 ID=mRNA_M-pyrifera_M_contig90056.20874.1|Name=mRNA_M-pyrifera_M_contig90056.20874.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig90056:375..659+ (Macrocystis pyrifera P11B4 male)
ATGCATTGGGCAGTTCAGATGCTACTTATTCTGTGGCCGTTTATTCTCAT
CGTGGGCGTGTTTTTGTGTCTTCATCTCATCACCATGTGTACGGGGAATT
CCGCCCCGGGATGGCAATTACGCTGTACCGAATGTGATCGAACTCGTGAT
GCCGGTGAAGCGGGGGTGACTCGGATTGGTGCTGCCAGTATCGGAAAAGT
GACCTTTGGATACTGTAGCGAGTGCCAGGGCTTTCGCTGGATTGCCATCG
AACGGAAACCCAATTTTGAACATGCCAGTGAGTGAATGCATTGGGCAGTT
CAGATGCTACTTATTCTGTGGCCGTTTATTCTCATCGTGGGCGTGTTTTT
GTGTCTTCATCTCATCACCATGTGTACGGGGAATTCCGCCCCGGGATGGC
AATTACGCTGTACCGAATGTGATCGAACTCGTGATGCCGGTGAAGCGGGG
GTGACTCGGATTGGTGCTGCCAGTATCGGAAAAGTGACCTTTGGATACTG
TAGCGAGTGCCAGGGCTTTCGCTGGATTGCCATCGAACGGAAACCCAATT
TTGAACATGCCAGTGAGTGA
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