mRNA_M-pyrifera_M_contig90048.20869.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90048.20869.1
Unique NamemRNA_M-pyrifera_M_contig90048.20869.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig90048.20869.1 vs. uniprot
Match: A0A7S0K167_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K167_CAFRO)

HSP 1 Score: 148 bits (373), Expect = 8.960e-39
Identity = 82/173 (47.40%), Postives = 107/173 (61.85%), Query Frame = 1
Query:    1 STLIPLIIVLLITMTKEGYEDSKRHYSDRTVNNYHASVLEDGGKVNSSVR--------------WRELRVGQVVVVRSGEAIPADMVLLQTSKPDGSCYIETSNIDGETDLKTKEAIHAV-----SEACVE-----------DQLHTLAGLRGTLECQPPNAQLYKFEGKLSI 429
            +TL PL +VL I+M KE YED KR +SDR VNN     L      +S+ +              W ++RVG VV+VR GE +PADMVLLQTSKPDGSCY+ETSNIDGETDLK KEA+H++     S  C +           +QL+ + GL   ++CQ PN +LYKFEG +++
Sbjct:  183 TTLGPLCLVLAISMAKEAYEDGKRGFSDRQVNNTLVPKLLGPRAADSTDKRERTGPDGSLCMATWADVRVGDVVLVRGGEPVPADMVLLQTSKPDGSCYVETSNIDGETDLKAKEAVHSIAGVDPSVLCGKHGESEPHMPSREQLNRILGLSAAVQCQAPNDKLYKFEGTITL 355          
BLAST of mRNA_M-pyrifera_M_contig90048.20869.1 vs. uniprot
Match: A0A5A8ECU9_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ECU9_CAFRO)

HSP 1 Score: 148 bits (373), Expect = 1.520e-38
Identity = 82/173 (47.40%), Postives = 107/173 (61.85%), Query Frame = 1
Query:    1 STLIPLIIVLLITMTKEGYEDSKRHYSDRTVNNYHASVLEDGGKVNSSVR--------------WRELRVGQVVVVRSGEAIPADMVLLQTSKPDGSCYIETSNIDGETDLKTKEAIHAV-----SEACVE-----------DQLHTLAGLRGTLECQPPNAQLYKFEGKLSI 429
            +TL PL +VL I+M KE YED KR +SDR VNN     L      +S+ +              W ++RVG VV+VR GE +PADMVLLQTSKPDGSCY+ETSNIDGETDLK KEA+H++     S  C +           +QL+ + GL   ++CQ PN +LYKFEG +++
Sbjct:  100 TTLGPLCLVLAISMAKEAYEDGKRGFSDRQVNNTLVPKLLGPRAADSTDKRERTGPDGSLCMATWADVRVGDVVLVRGGEPVPADMVLLQTSKPDGSCYVETSNIDGETDLKAKEAVHSIAGVDPSVLCGKHGESEPHMPSREQLNRILGLSAAVQCQAPNDKLYKFEGTITL 272          
BLAST of mRNA_M-pyrifera_M_contig90048.20869.1 vs. uniprot
Match: A0A482UDJ0_9ARCH (PhoLip_ATPase_N domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UDJ0_9ARCH)

HSP 1 Score: 134 bits (337), Expect = 2.430e-35
Identity = 69/143 (48.25%), Postives = 97/143 (67.83%), Query Frame = 1
Query:    1 STLIPLIIVLLITMTKEGYEDSKRHYSDRTVNNYHASVLEDGGKVNSSVRWRELRVGQVVVVRSGEAIPADMVLLQTSKPDGSCYIETSNIDGETDLKTKEAIHAVSEACVEDQLHTLAGLRGTLECQPPNAQLYKFEGKLSI 429
            STL PL +VL ITM KEG ED KRH SD  VNN  ASV+   G +   V W+++RVG V+ + +   +PAD+++LQTS+P  +CY+ETSNIDGET+LK +E +  +S     D     A LRGT+E +PPN +++ F G++S+
Sbjct:  204 STLGPLCLVLAITMLKEGIEDFKRHRSDHEVNNRMASVVHVDGSIKQ-VPWKDIRVGMVLKLPNRSEVPADIMVLQTSEPRAACYVETSNIDGETNLKLREGVGPISYLISSDA--EAARLRGTMEYEPPNDRIHTFTGRISV 343          
BLAST of mRNA_M-pyrifera_M_contig90048.20869.1 vs. uniprot
Match: A0A0L0DD60_THETB (P-type phospholipid transporter n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DD60_THETB)

HSP 1 Score: 134 bits (338), Expect = 7.910e-34
Identity = 70/145 (48.28%), Postives = 99/145 (68.28%), Query Frame = 1
Query:    1 STLIPLIIVLLITMTKEGYEDSKRHYSDRTVNNYHASVLEDGGKVNSSVRWRELRVGQVVVVRSGEAIPADMVLLQTSKPDGSCYIETSNIDGETDLKTKEA----IHAVSEACVEDQLHTLAGLRGTLECQPPNAQLYKFEGKL 423
            +T + L +VL  T  KE  ED +RH +DR VN    SV+ DG  V  +VRWR++RVG V+ VR+GE +PAD+++L +S+P G CY+ETSN+DGE++LK ++A    +HAV+ A V       + LRG LEC PPNA +Y+F+G L
Sbjct:  601 TTAMTLAVVLAFTALKEALEDIRRHRNDRAVNATPVSVVLDGELV--TVRWRDVRVGDVLHVRNGEFLPADLLVLSSSEPQGMCYVETSNLDGESNLKIRKAPESSVHAVTPASV-------SALRGLLECDPPNADMYRFDGSL 736          
BLAST of mRNA_M-pyrifera_M_contig90048.20869.1 vs. uniprot
Match: A0A165DKC5_EXIGL (ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (Fragment) n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165DKC5_EXIGL)

HSP 1 Score: 127 bits (319), Expect = 1.260e-33
Identity = 68/143 (47.55%), Postives = 91/143 (63.64%), Query Frame = 1
Query:    1 STLIPLIIVLLITMTKEGYEDSKRHYSDRTVNNYHASVLEDGGKVNSSVRWRELRVGQVVVVRSGEAIPADMVLLQTSKPDGSCYIETSNIDGETDLKTKEAIHAVSEACVEDQLHTLAGLRGTLECQPPNAQLYKFEGKLSI 429
            +T+ PL +VLL +  KE  ED KRH SD  +N   A VL+D G   + VRWR++RVG VV + S   IPAD++LL +S+P+G CYIET+N+DGET+LK K+A    S          + GLRGTL  + PN  LY +EG L +
Sbjct:    2 TTIGPLAVVLLASAFKEAQEDLKRHQSDSELNARQAEVLQDDGTFRN-VRWRDIRVGDVVRLPSDSFIPADLILLSSSEPEGLCYIETANLDGETNLKIKQASTHTSHLVTPG---AVLGLRGTLRSEQPNNSLYTYEGTLDL 140          
BLAST of mRNA_M-pyrifera_M_contig90048.20869.1 vs. uniprot
Match: A0A6A5BHN6_NAEFO (Phospholipid-transporting ATPase n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BHN6_NAEFO)

HSP 1 Score: 129 bits (325), Expect = 4.370e-32
Identity = 66/143 (46.15%), Postives = 92/143 (64.34%), Query Frame = 1
Query:    1 STLIPLIIVLLITMTKEGYEDSKRHYSDRTVNNYHASVLEDGGKVNSSVRWRELRVGQVVVVRSGEAIPADMVLLQTSKPDGSCYIETSNIDGETDLKTKEAIHAVSEACVEDQLHTLAGLRGTLECQPPNAQLYKFEGKLSI 429
            ST IPL+IV++I M K+GYED KRH SD  VNN   S+L +G  +   V W+++RVG +V V   E+ PAD++ + +S+  G CYIETS +DGET+LK K  +H  S   + D  + L  LRG + C+ PN +LY F G + I
Sbjct:  105 STAIPLVIVIIIQMIKDGYEDIKRHLSDNEVNNRTISILRNGQVME--VAWKQVRVGDIVKVNQDESFPADLIGISSSEHQGICYIETSQLDGETNLKIKRCVHPTS--ALTDP-NALLKLRGVVNCEQPNNKLYNFTGNIKI 242          
BLAST of mRNA_M-pyrifera_M_contig90048.20869.1 vs. uniprot
Match: A0A164PL08_9AGAM (Phospholipid-transporting ATPase n=2 Tax=Sistotremastrum TaxID=139133 RepID=A0A164PL08_9AGAM)

HSP 1 Score: 129 bits (324), Expect = 5.940e-32
Identity = 66/142 (46.48%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    1 STLIPLIIVLLITMTKEGYEDSKRHYSDRTVNNYHASVLEDGGKVNSSVRWRELRVGQVVVVRSGEAIPADMVLLQTSKPDGSCYIETSNIDGETDLKTKEAIHAVSEACVEDQLHTLAGLRGTLECQPPNAQLYKFEGKLS 426
            +T+ PL +VLL +  KE  ED KRH SD  +N  HA VL+ GG+     RW+++RVG ++ V S E IPAD+VL+ +S+P+G CYIETSN+DGET+LK K+A    S+        ++  L+GTL C+ PN  LY F G ++
Sbjct:  198 TTIAPLAVVLLASAFKEFQEDLKRHQSDAELNARHAKVLDSGGRFVQK-RWKDIRVGDLIRVESDEFIPADLVLVASSEPEGLCYIETSNLDGETNLKIKQASPHTSKLTTPQ---SVLSLKGTLRCEQPNNSLYTFSGTIT 335          
BLAST of mRNA_M-pyrifera_M_contig90048.20869.1 vs. uniprot
Match: D2V734_NAEGR (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V734_NAEGR)

HSP 1 Score: 128 bits (322), Expect = 1.090e-31
Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 1
Query:    1 STLIPLIIVLLITMTKEGYEDSKRHYSDRTVNNYHASVLEDGGKVNSSVRWRELRVGQVVVVRSGEAIPADMVLLQTSKPDGSCYIETSNIDGETDLKTKEAIHAVSEACVEDQLHTLAGLRGTLECQPPNAQLYKFEGKLSI 429
            ST +PL++V++I M K+GYED KRH SD  VNN   S+L +G  +   V W+E++VG +V V   E+ PAD++ + +S+  G CYIETS +DGET+LK K  +H  SE       + L  L+G + C+ PN +LY F G + I
Sbjct:   47 STALPLVMVIIIQMIKDGYEDVKRHISDNEVNNRKISILRNGEVME--VCWKEVQVGDIVKVNQDESFPADLIGISSSEHQGICYIETSQLDGETNLKIKRCVHPTSELI---DPNALLKLKGVINCEQPNNKLYNFTGNIKI 184          
BLAST of mRNA_M-pyrifera_M_contig90048.20869.1 vs. uniprot
Match: A0A8J4UXJ2_9MYCE (Phospholipid-transporting ATPase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UXJ2_9MYCE)

HSP 1 Score: 128 bits (322), Expect = 1.110e-31
Identity = 67/143 (46.85%), Postives = 94/143 (65.73%), Query Frame = 1
Query:    1 STLIPLIIVLLITMTKEGYEDSKRHYSDRTVNNYHASVLEDGGKVNSSVRWRELRVGQVVVVRSGEAIPADMVLLQTSKPDGSCYIETSNIDGETDLKTKEAIHAVSEACVEDQLHTLAGLRGTLECQPPNAQLYKFEGKLSI 429
            +T IPLI VLL+T  KEG ED KR+ SD TVNN +A VL +     S + W++L+VG +V V  GE  PAD+++L +S+  G CYIETSN+DGET+LK ++AI    E   ++Q   L+   GT+EC+ PN  +Y F G + +
Sbjct:  244 TTWIPLIFVLLVTAVKEGIEDFKRNQSDNTVNNLNAKVLSNNQF--SDLPWKQLQVGDIVKVVKGERFPADLIILNSSEQHGVCYIETSNLDGETNLKQRQAIPQTFEILRDEQ--DLSRFNGTIECEHPNNVIYVFNGTVRM 382          
BLAST of mRNA_M-pyrifera_M_contig90048.20869.1 vs. uniprot
Match: A3FIN4-2 (Isoform 2 of Phospholipid-transporting ATPase FetA n=1 Tax=Mus musculus TaxID=10090 RepID=A3FIN4-2)

HSP 1 Score: 123 bits (309), Expect = 1.180e-31
Identity = 62/142 (43.66%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 STLIPLIIVLLITMTKEGYEDSKRHYSDRTVNNYHASVLEDGGKVNSSVRWRELRVGQVVVVRSGEAIPADMVLLQTSKPDGSCYIETSNIDGETDLKTKEAIHAVSEACVEDQLHTLAGLRGTLECQPPNAQLYKFEGKLS 426
            +T+IPLI+VL IT  K+  +D KRH SD+ +NN   S+L +G      ++WR ++VG ++ + +   + ADM+LL +S+P G  YIET+++DGET+LK K+AI   S   +ED L  L+   G + C PPN +L KF G LS
Sbjct:  103 TTVIPLIVVLSITGVKDAIDDVKRHRSDQQINNRSVSILVNGRV--EEIKWRNVQVGDIIKLENNHPVTADMLLLSSSEPYGLTYIETADLDGETNLKVKQAISVTS--AMEDNLELLSSFNGEVRCDPPNNKLDKFSGTLS 240          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90048.20869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0K167_CAFRO8.960e-3947.40Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8ECU9_CAFRO1.520e-3847.40Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A482UDJ0_9ARCH2.430e-3548.25PhoLip_ATPase_N domain-containing protein (Fragmen... [more]
A0A0L0DD60_THETB7.910e-3448.28P-type phospholipid transporter n=1 Tax=Thecamonas... [more]
A0A165DKC5_EXIGL1.260e-3347.55ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transport... [more]
A0A6A5BHN6_NAEFO4.370e-3246.15Phospholipid-transporting ATPase n=2 Tax=Naegleria... [more]
A0A164PL08_9AGAM5.940e-3246.48Phospholipid-transporting ATPase n=2 Tax=Sistotrem... [more]
D2V734_NAEGR1.090e-3144.06Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
A0A8J4UXJ2_9MYCE1.110e-3146.85Phospholipid-transporting ATPase n=1 Tax=Polysphon... [more]
A3FIN4-21.180e-3143.66Isoform 2 of Phospholipid-transporting ATPase FetA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90048contigM-pyrifera_M_contig90048:228..773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue5.4e-29
Seed eggNOG ortholog529818.AMSG_06441T0
Preferred nameCWF19L2
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
Hectar predicted targeting categorysignal peptide
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071014,GO:0071704,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.Protein similar to CwfJ C-terminus 2
EggNOG OGsCOG0474@1,KOG0206@2759,KOG2477@1,KOG2477@2759
EC3.6.3.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons2
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816811.7505164-CDS-M-pyrifera_M_contig90048:227..5591622816811.7505164-CDS-M-pyrifera_M_contig90048:227..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90048 228..559 +
1692278192.7876124-CDS-M-pyrifera_M_contig90048:227..5591692278192.7876124-CDS-M-pyrifera_M_contig90048:227..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90048 228..559 +
1622816811.762326-CDS-M-pyrifera_M_contig90048:676..7731622816811.762326-CDS-M-pyrifera_M_contig90048:676..773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90048 677..773 +
1692278192.8063178-CDS-M-pyrifera_M_contig90048:676..7731692278192.8063178-CDS-M-pyrifera_M_contig90048:676..773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90048 677..773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90048.20869.1prot_M-pyrifera_M_contig90048.20869.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90048 228..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90048.20869.1

>prot_M-pyrifera_M_contig90048.20869.1 ID=prot_M-pyrifera_M_contig90048.20869.1|Name=mRNA_M-pyrifera_M_contig90048.20869.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=143bp
STLIPLIIVLLITMTKEGYEDSKRHYSDRTVNNYHASVLEDGGKVNSSVR
WRELRVGQVVVVRSGEAIPADMVLLQTSKPDGSCYIETSNIDGETDLKTK
EAIHAVSEACVEDQLHTLAGLRGTLECQPPNAQLYKFEGKLSI
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mRNA from alignment at M-pyrifera_M_contig90048:228..773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90048.20869.1 ID=mRNA_M-pyrifera_M_contig90048.20869.1|Name=mRNA_M-pyrifera_M_contig90048.20869.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig90048:228..773+ (Macrocystis pyrifera P11B4 male)
TCTACTCTGATTCCGCTGATCATCGTGCTGCTGATCACGATGACGAAAGA GGGGTACGAGGACTCGAAGAGGCACTACTCGGACCGCACGGTGAACAACT ACCACGCGTCGGTGCTGGAAGATGGTGGGAAGGTGAATTCCAGCGTGCGC TGGCGAGAGTTGCGAGTGGGGCAGGTGGTGGTGGTGCGCAGTGGGGAGGC CATCCCCGCGGACATGGTGCTGCTGCAAACGAGCAAGCCTGACGGCTCGT GCTACATTGAAACGTCCAACATTGACGGCGAGACGGACCTCAAGACAAAA GAGGCCATTCACGCCGTTTCAGAGGCGTGTGTGTCGGTGTCTCGCACCCA CGGGGTGAAGCGCATGGCCAGCCAGGCCTCGAAGCGTCTGGAGGTGATGG GGGACGGGGAAGGGTTGGCGACGACGGAAAATGAGAGCGCAGCACCAAGC GAAGATCAGCTGCACACCTTGGCTGGGCTCAGAGGCACGCTCGAGTGCCA ACCACCCAATGCGCAGCTGTACAAGTTCGAGGGCAAGCTGTCGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90048:228..773+

>mRNA_M-pyrifera_M_contig90048.20869.1 ID=mRNA_M-pyrifera_M_contig90048.20869.1|Name=mRNA_M-pyrifera_M_contig90048.20869.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=858bp|location=Sequence derived from alignment at M-pyrifera_M_contig90048:228..773+ (Macrocystis pyrifera P11B4 male)
TCTACTCTGATTCCGCTGATCATCGTGCTGCTGATCACGATGACGAAAGA
GGGGTACGAGGACTCGAAGAGGCACTACTCGGACCGCACGGTGAACAACT
ACCACGCGTCGGTGCTGGAAGATGGTGGGAAGGTGAATTCCAGCGTGCGC
TGGCGAGAGTTGCGAGTGGGGCAGGTGGTGGTGGTGCGCAGTGGGGAGGC
CATCCCCGCGGACATGGTGCTGCTGCAAACGAGCAAGCCTGACGGCTCGT
GCTACATTGAAACGTCCAACATTGACGGCGAGACGGACCTCAAGACAAAA
GAGGCCATTCACGCCGTTTCAGAGGCGTGTGTTCTACTCTGATTCCGCTG
ATCATCGTGCTGCTGATCACGATGACGAAAGAGGGGTACGAGGACTCGAA
GAGGCACTACTCGGACCGCACGGTGAACAACTACCACGCGTCGGTGCTGG
AAGATGGTGGGAAGGTGAATTCCAGCGTGCGCTGGCGAGAGTTGCGAGTG
GGGCAGGTGGTGGTGGTGCGCAGTGGGGAGGCCATCCCCGCGGACATGGT
GCTGCTGCAAACGAGCAAGCCTGACGGCTCGTGCTACATTGAAACGTCCA
ACATTGACGGCGAGACGGACCTCAAGACAAAAGAGGCCATTCACGCCGTT
TCAGAGGCGTGTGTCGAAGATCAGCTGCACACCTTGGCTGGGCTCAGAGG
CACGCTCGAGTGCCAACCACCCAATGCGCAGCTGTACAAGTTCGAGGGCA
AGCTGTCGATCCGAAGATCAGCTGCACACCTTGGCTGGGCTCAGAGGCAC
GCTCGAGTGCCAACCACCCAATGCGCAGCTGTACAAGTTCGAGGGCAAGC
TGTCGATC
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