mRNA_M-pyrifera_M_contig90029.20862.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig90029.20862.1
Unique NamemRNA_M-pyrifera_M_contig90029.20862.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig90029.20862.1 vs. uniprot
Match: H2ZYN1_LATCH (SH3 domain-containing protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H2ZYN1_LATCH)

HSP 1 Score: 59.7 bits (143), Expect = 1.490e-9
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   16 EISMARGDIIEITYQDDGPGWWEGTLNGKNGLFPSNY 126
            E+S A+GDII +T  ++G GWWEGTLNGK G FPSNY
Sbjct:   97 ELSFAKGDIIHVTRVEEG-GWWEGTLNGKTGWFPSNY 132
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BLAST of mRNA_M-pyrifera_M_contig90029.20862.1 vs. uniprot
Match: A0A8C4HI67_DICLA (Rho guanine nucleotide exchange factor (GEF) 7a n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4HI67_DICLA)

HSP 1 Score: 62.0 bits (149), Expect = 1.650e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   16 EISMARGDIIEITYQDDGPGWWEGTLNGKNGLFPSNY 126
            E++ A+GDII +T Q+DG GWWEGTLNGK G FPSNY
Sbjct:  110 ELTFAKGDIIGVTRQEDG-GWWEGTLNGKTGWFPSNY 145
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BLAST of mRNA_M-pyrifera_M_contig90029.20862.1 vs. uniprot
Match: A0A8C4HG85_DICLA (Rho guanine nucleotide exchange factor (GEF) 7a n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4HG85_DICLA)

HSP 1 Score: 62.0 bits (149), Expect = 1.660e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   16 EISMARGDIIEITYQDDGPGWWEGTLNGKNGLFPSNY 126
            E++ A+GDII +T Q+DG GWWEGTLNGK G FPSNY
Sbjct:  153 ELTFAKGDIIGVTRQEDG-GWWEGTLNGKTGWFPSNY 188
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BLAST of mRNA_M-pyrifera_M_contig90029.20862.1 vs. uniprot
Match: A0A8C4NRN9_DICLA (Rho guanine nucleotide exchange factor (GEF) 7a n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4NRN9_DICLA)

HSP 1 Score: 62.0 bits (149), Expect = 1.660e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   16 EISMARGDIIEITYQDDGPGWWEGTLNGKNGLFPSNY 126
            E++ A+GDII +T Q+DG GWWEGTLNGK G FPSNY
Sbjct:  195 ELTFAKGDIIGVTRQEDG-GWWEGTLNGKTGWFPSNY 230
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BLAST of mRNA_M-pyrifera_M_contig90029.20862.1 vs. uniprot
Match: A0A8C4HG50_DICLA (Rho guanine nucleotide exchange factor (GEF) 7a n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4HG50_DICLA)

HSP 1 Score: 62.0 bits (149), Expect = 1.660e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   16 EISMARGDIIEITYQDDGPGWWEGTLNGKNGLFPSNY 126
            E++ A+GDII +T Q+DG GWWEGTLNGK G FPSNY
Sbjct:  181 ELTFAKGDIIGVTRQEDG-GWWEGTLNGKTGWFPSNY 216
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BLAST of mRNA_M-pyrifera_M_contig90029.20862.1 vs. uniprot
Match: A0A8C4HGX7_DICLA (Rho guanine nucleotide exchange factor (GEF) 7a n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4HGX7_DICLA)

HSP 1 Score: 62.0 bits (149), Expect = 1.660e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   16 EISMARGDIIEITYQDDGPGWWEGTLNGKNGLFPSNY 126
            E++ A+GDII +T Q+DG GWWEGTLNGK G FPSNY
Sbjct:  181 ELTFAKGDIIGVTRQEDG-GWWEGTLNGKTGWFPSNY 216
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BLAST of mRNA_M-pyrifera_M_contig90029.20862.1 vs. uniprot
Match: A0A8C4HFR8_DICLA (Rho guanine nucleotide exchange factor (GEF) 7a n=5 Tax=Percomorphaceae TaxID=1489872 RepID=A0A8C4HFR8_DICLA)

HSP 1 Score: 62.0 bits (149), Expect = 1.660e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   16 EISMARGDIIEITYQDDGPGWWEGTLNGKNGLFPSNY 126
            E++ A+GDII +T Q+DG GWWEGTLNGK G FPSNY
Sbjct:  181 ELTFAKGDIIGVTRQEDG-GWWEGTLNGKTGWFPSNY 216
[Close]
BLAST of mRNA_M-pyrifera_M_contig90029.20862.1 vs. uniprot
Match: A0A8C4HGP8_DICLA (Rho guanine nucleotide exchange factor (GEF) 7a n=1 Tax=Dicentrarchus labrax TaxID=13489 RepID=A0A8C4HGP8_DICLA)

HSP 1 Score: 62.0 bits (149), Expect = 1.660e-9
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   16 EISMARGDIIEITYQDDGPGWWEGTLNGKNGLFPSNY 126
            E++ A+GDII +T Q+DG GWWEGTLNGK G FPSNY
Sbjct:  181 ELTFAKGDIIGVTRQEDG-GWWEGTLNGKTGWFPSNY 216
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BLAST of mRNA_M-pyrifera_M_contig90029.20862.1 vs. uniprot
Match: UPI0020152353 (LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 7b n=1 Tax=Alosa alosa TaxID=278164 RepID=UPI0020152353)

HSP 1 Score: 62.0 bits (149), Expect = 1.660e-9
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   16 EISMARGDIIEITYQDDGPGWWEGTLNGKNGLFPSNY 126
            E+S  +GDII++T Q+DG GWWEG+LNGK+G FPSNY
Sbjct:  181 ELSFCKGDIIQVTRQEDG-GWWEGSLNGKSGWFPSNY 216
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BLAST of mRNA_M-pyrifera_M_contig90029.20862.1 vs. uniprot
Match: A0A815F9D6_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815F9D6_ADIRI)

HSP 1 Score: 57.8 bits (138), Expect = 2.110e-9
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 ARKDTEISMARGDIIEITYQDDGPGWWEGTLNGKNGLFPSNYCD 132
            A+   E+S A+GD+I IT      GWWEGTL+GK G FPSNY +
Sbjct:   24 AQNTDELSFAKGDVIIITQAPTDGGWWEGTLDGKTGWFPSNYVE 67
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90029.20862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H2ZYN1_LATCH1.490e-967.57SH3 domain-containing protein n=1 Tax=Latimeria ch... [more]
A0A8C4HI67_DICLA1.650e-970.27Rho guanine nucleotide exchange factor (GEF) 7a n=... [more]
A0A8C4HG85_DICLA1.660e-970.27Rho guanine nucleotide exchange factor (GEF) 7a n=... [more]
A0A8C4NRN9_DICLA1.660e-970.27Rho guanine nucleotide exchange factor (GEF) 7a n=... [more]
A0A8C4HG50_DICLA1.660e-970.27Rho guanine nucleotide exchange factor (GEF) 7a n=... [more]
A0A8C4HGX7_DICLA1.660e-970.27Rho guanine nucleotide exchange factor (GEF) 7a n=... [more]
A0A8C4HFR8_DICLA1.660e-970.27Rho guanine nucleotide exchange factor (GEF) 7a n=... [more]
A0A8C4HGP8_DICLA1.660e-970.27Rho guanine nucleotide exchange factor (GEF) 7a n=... [more]
UPI00201523531.660e-967.57LOW QUALITY PROTEIN: rho guanine nucleotide exchan... [more]
A0A815F9D6_ADIRI2.110e-954.55Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig90029contigM-pyrifera_M_contig90029:579..797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816811.4454408-CDS-M-pyrifera_M_contig90029:578..7731622816811.4454408-CDS-M-pyrifera_M_contig90029:578..773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90029 579..773 -
1692278192.5811296-CDS-M-pyrifera_M_contig90029:578..7731692278192.5811296-CDS-M-pyrifera_M_contig90029:578..773Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig90029 579..773 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816811.4583194-UTR-M-pyrifera_M_contig90029:773..7971622816811.4583194-UTR-M-pyrifera_M_contig90029:773..797Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90029 774..797 -
1692278192.5978184-UTR-M-pyrifera_M_contig90029:773..7971692278192.5978184-UTR-M-pyrifera_M_contig90029:773..797Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig90029 774..797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig90029.20862.1prot_M-pyrifera_M_contig90029.20862.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig90029 579..773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig90029.20862.1

>prot_M-pyrifera_M_contig90029.20862.1 ID=prot_M-pyrifera_M_contig90029.20862.1|Name=mRNA_M-pyrifera_M_contig90029.20862.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp
MARGDIIEITYQDDGPGWWEGTLNGKNGLFPSNYCDVYELWKKKKKRLKV
DTDKVSDRIKQVQQA
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mRNA from alignment at M-pyrifera_M_contig90029:579..797-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig90029.20862.1 ID=mRNA_M-pyrifera_M_contig90029.20862.1|Name=mRNA_M-pyrifera_M_contig90029.20862.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig90029:579..797- (Macrocystis pyrifera P11B4 male)
GCGCGGAAGGATACAGAGATTTCTATGGCGCGGGGCGACATCATCGAAAT
CACGTACCAAGACGACGGGCCCGGCTGGTGGGAGGGAACGCTCAACGGAA
AGAACGGCCTCTTCCCGAGCAACTACTGCGACGTCTACGAGCTTTGGAAG
AAGAAGAAGAAGAGGCTCAAGGTAGACACGGACAAGGTGTCTGACCGCAT
CAAGCAGGTGCAGCAGGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig90029:579..797-

>mRNA_M-pyrifera_M_contig90029.20862.1 ID=mRNA_M-pyrifera_M_contig90029.20862.1|Name=mRNA_M-pyrifera_M_contig90029.20862.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig90029:579..797- (Macrocystis pyrifera P11B4 male)
ATGGCGCGGGGCGACATCATCGAAATCACGTACCAAGACGACGGGCCCGG
CTGGTGGGAGGGAACGCTCAACGGAAAGAACGGCCTCTTCCCGAGCAACT
ACTGCGACGTCTACGAGCTTTGGAAGAAGAAGAAGAAGAGGCTCAAGGTA
GACACGGACAAGGTGTCTGACCGCATCAAGCAGGTGCAGCAGGCGATGGC
GCGGGGCGACATCATCGAAATCACGTACCAAGACGACGGGCCCGGCTGGT
GGGAGGGAACGCTCAACGGAAAGAACGGCCTCTTCCCGAGCAACTACTGC
GACGTCTACGAGCTTTGGAAGAAGAAGAAGAAGAGGCTCAAGGTAGACAC
GGACAAGGTGTCTGACCGCATCAAGCAGGTGCAGCAGGCG
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