mRNA_M-pyrifera_M_contig90024.20861.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig90024.20861.1 vs. uniprot
Match: A0A7Y2ILX0_9ACTN (Cytochrome-c oxidase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2ILX0_9ACTN) HSP 1 Score: 298 bits (764), Expect = 5.240e-97 Identity = 145/224 (64.73%), Postives = 170/224 (75.89%), Query Frame = 1 Query: 1 WTILPAIVLAVVSVPTVISIWKLEEKNEPT----------ELDVMVIGQQWWWEYRYDVDGDGFFRDADGDG----EIWGQDGVGGDEDDREWPLEVALDPDDLSVANELVIPAGVQVDLTITSRDVIHSYWIPRLNGKRDAVPGRFHTWSIEADEAGKYTGWCTEYCGLSHARMRMSTVALEQADWDTWFANQITPADVPTDES-ALAGRTLFQANCASCHVI 627 WT PA++L +SV TV SIW LEEKN P +LDV+VIGQQWWWEYRYD+D DGFF D DGDG ++W D DD EWPLE+ALD DD+SVANE+VIPAG Q+DLTITSRDVIHS+WIPRLNGKRDAVPGR HTW++EAD G+YTGWCTE+CGLSHARMRM+ +AL +++D W ANQ TPAD+P + S A AGR FQ CASCH+I Sbjct: 101 WTAAPAVLLIFISVFTVFSIWDLEEKNTPGGGVAACGDTGDLDVLVIGQQWWWEYRYDIDCDGFFEDLDGDGVNNTDVW-------DADDAEWPLEIALDDDDVSVANEMVIPAGQQIDLTITSRDVIHSFWIPRLNGKRDAVPGRLHTWNLEADFPGEYTGWCTEFCGLSHARMRMNVIALTDSEFDEWLANQSTPADIPPEGSEAAAGRETFQQQCASCHII 317
BLAST of mRNA_M-pyrifera_M_contig90024.20861.1 vs. uniprot
Match: A0A7Y2DLJ3_9ACTN (Cytochrome-c oxidase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DLJ3_9ACTN) HSP 1 Score: 290 bits (741), Expect = 1.680e-93 Identity = 143/222 (64.41%), Postives = 166/222 (74.77%), Query Frame = 1 Query: 1 WTILPAIVLAVVSVPTVISIWKLEEKNEPT-------ELDVMVIGQQWWWEYRYDVDGDGFFRDAD-----GDGEIWGQDGVGGDEDDREWPLEVALDPDDLSVANELVIPAGVQVDLTITSRDVIHSYWIPRLNGKRDAVPGRFHTWSIEADEAGKYTGWCTEYCGLSHARMRMSTVALEQADWDTWFANQITPADVPTDES-ALAGRTLFQANCASCHVI 627 WT PA++LA +SV TV++IW LEE N+P ELDVMVIGQQWWWEYRYD+DGDGFF D + W D DD EWPLE+ALD DD+SVANELVIPAG Q+DLTITSRDVIHS+WIPRLNGKRDAVPGR H+W+ A+E G+YTGWCTEYCGLSHARMRM+T+AL ++D W ANQ T AD+P S A AGR LFQ CASCH++ Sbjct: 106 WTAAPAVLLAGISVFTVLAIWDLEEANDPGGYLDGEGELDVMVIGQQWWWEYRYDIDGDGFFEDXXXXXXPNSTDEW-------DPDDAEWPLEIALDDDDISVANELVIPAGQQIDLTITSRDVIHSFWIPRLNGKRDAVPGRLHSWNFTAEEPGEYTGWCTEYCGLSHARMRMNTIALPPDEFDEWIANQATTADIPAAGSEAAAGRELFQQQCASCHIV 320
BLAST of mRNA_M-pyrifera_M_contig90024.20861.1 vs. uniprot
Match: A0A5Q2RQL6_9ACTN (Cytochrome c oxidase subunit 2 n=2 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RQL6_9ACTN) HSP 1 Score: 198 bits (503), Expect = 9.660e-59 Identity = 101/210 (48.10%), Postives = 130/210 (61.90%), Query Frame = 1 Query: 1 WTILPAIVLAVVSVPTVISIWKLEEKNEPTELDVMVIGQQWWWEYRYDVDGDGFFRDADGDGEIWGQDGVGGDEDDREWPLEVALDPDDLSVANELVIPAGVQVDLTITSRDVIHSYWIPRLNGKRDAVPGRFHTWSIEADEAGKYTGWCTEYCGLSHARMRMSTVALEQADWDTWFANQITPADVPTDESALAGRTLFQANCASCHVIR 630 WTILPA++LA V+V T+++I++LE++++ +D+ V+G QWWW++ YDVD DG F D S A E+VIPAG QV+L+I S DVIHS+WIPRLNGKRDAVPGR HT S+E+DE G + G CTE+CGLSH MRM +AL Q ++D W Q P S GR F+ANCASCH IR Sbjct: 103 WTILPAVILAFVAVFTLVTIFELEKRDDDA-VDINVVGNQWWWQFNYDVDDDGEF---------------------------------DFSTATEMVIPAGRQVNLSIESNDVIHSFWIPRLNGKRDAVPGRTHTLSMESDEPGYFFGQCTEFCGLSHGVMRMRVIALPQDEYDAWLEEQAQDVGEPETASQARGREAFEANCASCHSIR 278
BLAST of mRNA_M-pyrifera_M_contig90024.20861.1 vs. uniprot
Match: UPI001AA0647F (cytochrome c oxidase subunit II n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA0647F) HSP 1 Score: 195 bits (496), Expect = 1.970e-57 Identity = 108/210 (51.43%), Postives = 130/210 (61.90%), Query Frame = 1 Query: 1 WTILPAIVLAVVSVPTVISIWKLEEKNEPTELDVMVIGQQWWWEYRYDVDGDGFFRDADGDGEIWGQDGVGGDEDDREWPLEVALDPDDLSVANELVIPAGVQVDLTITSRDVIHSYWIPRLNGKRDAVPGRFHTWSIEADEAGKYTGWCTEYCGLSHARMRMSTVALEQADWDTWFANQITPADVPTDES-ALAGRTLFQANCASCHVI 627 WT LPA++LA ++V TVI+I KLE++++ L V V GQQWWW Y+YDVDGDG + DG G D++ ANELVIPAG +V LTI+S DVIHS+WIP LNGK+DAVPG W IEAD+ G Y G CTE+CGLSHA MRM AL+ A +D W ANQ PA P S A AG F CA CHV+ Sbjct: 103 WTALPALILAAIAVFTVITIIKLEQRSDDA-LAVRVYGQQWWWSYQYDVDGDGSY---DGQG--------------------------DITTANELVIPAGREVSLTISSHDVIHSFWIPALNGKKDAVPGMDSHWKIEADQPGVYMGQCTEFCGLSHANMRMVVRALDPAQFDEWVANQQRPARSPEPGSLAAAGEAQFGNLCAQCHVV 282
BLAST of mRNA_M-pyrifera_M_contig90024.20861.1 vs. uniprot
Match: A0A7K2EB10_9ACTN (Cytochrome c oxidase subunit 2 n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2EB10_9ACTN) HSP 1 Score: 194 bits (494), Expect = 5.760e-57 Identity = 103/211 (48.82%), Postives = 128/211 (60.66%), Query Frame = 1 Query: 1 WTILPAIVLAVVSVPTVISIWKLEEKNEPTE-LDVMVIGQQWWWEYRYDVDGDGFFRDADGDGEIWGQDGVGGDEDDREWPLEVALDPDDLSVANELVIPAGVQVDLTITSRDVIHSYWIPRLNGKRDAVPGRFHTWSIEADEAGKYTGWCTEYCGLSHARMRMSTVALEQADWDTWFANQITPA-DVPTDESALAGRTLFQANCASCHVI 627 WTI+P I+LAV+SV +IS+ +L E + + L V V+GQQWWWE++Y +DGD P D+ ANELVIP QV L ITSRDVIHS+WIPRLNGKRDAVPGR H W IEADE G+Y G CTE+CGLSHA MRM V LE A+W+ W Q+ A + + G+ +F ANCA+CHV+ Sbjct: 123 WTIIPTILLAVISVFALISLVELNEVSAAEDDLRVTVVGQQWWWEFQYHLDGD-------------------------------TSTPPDIVTANELVIPVYQQVPLEITSRDVIHSFWIPRLNGKRDAVPGRTHPWVIEADEPGRYMGQCTEFCGLSHAYMRMYAVVLEPAEWEEWVQGQLVDAAPLEPGDPGYEGQEVFLANCANCHVV 302
BLAST of mRNA_M-pyrifera_M_contig90024.20861.1 vs. uniprot
Match: A0A349B924_9ACTN (Cytochrome c oxidase subunit 2 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B924_9ACTN) HSP 1 Score: 193 bits (490), Expect = 1.400e-56 Identity = 102/209 (48.80%), Postives = 127/209 (60.77%), Query Frame = 1 Query: 1 WTILPAIVLAVVSVPTVISIWKLEEKNEPTELDVMVIGQQWWWEYRYDVDGDGFFRDADGDGEIWGQDGVGGDEDDREWPLEVALDPDDLSVANELVIPAGVQVDLTITSRDVIHSYWIPRLNGKRDAVPGRFHTWSIEADEAGKYTGWCTEYCGLSHARMRMSTVALEQADWDTWFANQITPADVPTDESALAGRTLFQANCASCHVI 627 WT LPA++LA ++V TV +I L E + V+GQQWWW Y YD+DGDG + D D G E+ E+ D+ VANE+VIPAG V L I +RDVIHS+WIP LNGK+DAVPGR H S+EADE G Y G CTEYCGLSHA MRM AL +A+++ W Q+ PA P AG +F CASCH++ Sbjct: 106 WTALPAVILAFMAVFTVSTILDLAEDPGEEATRIRVVGQQWWWSYDYDIDGDGVYADDDVI--------APGIENPEEYET-------DIEVANEMVIPAGKPVYLEIEARDVIHSFWIPALNGKKDAVPGRTHYLSLEADEPGTYVGQCTEYCGLSHAYMRMVVHALPEAEYEAWVEEQLAPATEPQGAEEQAGAEVFAGRCASCHLV 299
BLAST of mRNA_M-pyrifera_M_contig90024.20861.1 vs. uniprot
Match: A0A6N7FH09_9ACTN (Cytochrome c oxidase subunit 2 n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FH09_9ACTN) HSP 1 Score: 192 bits (488), Expect = 7.680e-56 Identity = 99/210 (47.14%), Postives = 129/210 (61.43%), Query Frame = 1 Query: 1 WTILPAIVLAVVSVPTVISIWKLEEKNEPTELDVMVIGQQWWWEYRYDVDGDGFFRDADGDGEIWGQDGVGGDEDDREWPLEVALDPDDLSVANELVIPAGVQVDLTITSRDVIHSYWIPRLNGKRDAVPGRFHTWSIEADEAGKYTGWCTEYCGLSHARMRMSTVALEQADWDTWFANQITPADVPTD-ESALAGRTLFQANCASCHVI 627 WTILPA++LAV++VPTV +++ L E + + V V GQQWWW +RYD+DGDG F DG P+D++ A ELV+PA +V L +TS DVIHS+WIP+LNGKRD VPG H W ++AD G Y G CTE+CGLSHA MRM+ VA+ ++ W A+Q PA VP D E+A+ G F C +CH I Sbjct: 129 WTILPAVILAVIAVPTVATVFSLFEPRDEA-MTVEVTGQQWWWSFRYDIDGDGEF-----DG------------------------PEDITTATELVVPADTEVALRMTSEDVIHSFWIPQLNGKRDVVPGSVHDWWVQADAPGYYLGQCTEFCGLSHAYMRMAVVAVTDDEFSQWVADQQAPATVPEDDEAAMRGLETFVQQCTTCHQI 308
BLAST of mRNA_M-pyrifera_M_contig90024.20861.1 vs. uniprot
Match: A0A0C1UEM0_9ACTN (Cytochrome c oxidase subunit 2 n=2 Tax=unclassified Actinomycetia TaxID=52018 RepID=A0A0C1UEM0_9ACTN) HSP 1 Score: 191 bits (484), Expect = 1.070e-55 Identity = 105/225 (46.67%), Postives = 138/225 (61.33%), Query Frame = 1 Query: 1 WTILPAIVLAVVSVPTVISIWKL------------EEKNEPTELDVMVIGQQWWWEYRYDVDGDGFFRDADGDGEIWGQDGVGGDEDDREWPLEVA--LDPDDLSVANELVIPAGVQVDLTITSRDVIHSYWIPRLNGKRDAVPGRFHTWSIEADEAGKYTGWCTEYCGLSHARMRMSTVALEQADWDTWFANQITP--ADVPTDESALAGRTLFQANCASCHVI 627 WTI+P ++LAVVSV T+I++ + EE++ E +V+VIGQQWWWE+RY DG DGV L A L P D+ A +LV+PAG +++L+ITSRDVIHS+WIP LNGKRDA PGR H W +EADE G Y G CTE+CGLSH+RMRM +ALE D+ W Q+T +D+ T+E+ G T+F+ CA CHV+ Sbjct: 95 WTIIPTLILAVVSVFTLITLSSINSTDTNEVMITVEEESVLWEPEVVVIGQQWWWEFRYYFDG---------------LDGV---------DLSDARNLPPADIVTAGQLVMPAGQEIELSITSRDVIHSFWIPALNGKRDAAPGRVHPWKLEADEPGVYFGQCTEFCGLSHSRMRMQAIALEPEDFQIWVDEQLTDQDSDLITNEAVSRGLTVFENQCARCHVV 295
BLAST of mRNA_M-pyrifera_M_contig90024.20861.1 vs. uniprot
Match: A0A7X6P1Z3_9ACTN (Cytochrome c oxidase subunit 2 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6P1Z3_9ACTN) HSP 1 Score: 191 bits (484), Expect = 1.100e-55 Identity = 97/216 (44.91%), Postives = 128/216 (59.26%), Query Frame = 1 Query: 1 WTILPAIVLAVVSVPTVISIWKLEEKNEPTELDVMVIGQQWWWEYRYDVDGDGFFRDADGDGEIWGQDGVGGDEDDREWPLEVALDPDDLSVANELVIPAGVQVDLTITSRDVIHSYWIPRLNGKRDAVPGRFHTWSIEADEAGKYTGWCTEYCGLSHARMRMSTVALEQADWDTWFANQITPADVPTDES---------ALAGRTLFQANCASCH 621 WTI PA++LA ++V V +IW+LE++++P + V V GQQWWWEYRYDVD DG EI D+ AN++V+PAG +DL I S DVIHS+WIP LNGK+DAVPGR H W+I+A + G Y G CTE+CGLSHA MRM A+ A+++ W Q PA++P D + L G F A+CA+CH Sbjct: 108 WTIAPAVLLAFLAVFNVQAIWELEKRDDPNMISVEVYGQQWWWEYRYDVDSDG---------EI------------------------DIITANQMVVPAGTLIDLDIRSNDVIHSFWIPTLNGKKDAVPGRTHHWTIQAHKPGLYEGTCTEFCGLSHAHMRMEVKAVTTAEYEQWVEEQTAPANIPEDPTPDDSSDDDLVLTGYKAFVASCATCH 290
BLAST of mRNA_M-pyrifera_M_contig90024.20861.1 vs. uniprot
Match: A0A6L8GYM7_9ACTN (Cytochrome c oxidase subunit 2 n=4 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6L8GYM7_9ACTN) HSP 1 Score: 191 bits (485), Expect = 1.320e-55 Identity = 101/211 (47.87%), Postives = 127/211 (60.19%), Query Frame = 1 Query: 1 WTILPAIVLAVVSVPTVISIWKLEEKNEPTE-LDVMVIGQQWWWEYRYDVDGDGFFRDADGDGEIWGQDGVGGDEDDREWPLEVALDPDDLSVANELVIPAGVQVDLTITSRDVIHSYWIPRLNGKRDAVPGRFHTWSIEADEAGKYTGWCTEYCGLSHARMRMSTVALEQADWDTWFANQITPA-DVPTDESALAGRTLFQANCASCHVI 627 WTI+P I+LAV+SV T+IS+ +L E + + L V V+GQQWWWE++Y +DGD P D+ ANELV+P QV L ITSRDVIHS+WIPRLNGKRDAVPGR H W IEA+E G+Y G CTE+CGLSHA MRM V L +W+ W QI A + + G+ +F ANCA+CHV+ Sbjct: 125 WTIIPTILLAVISVFTLISLVELNEVSAAEDDLRVTVVGQQWWWEFQYHLDGD-------------------------------TSTPPDIVTANELVMPVRQQVPLEITSRDVIHSFWIPRLNGKRDAVPGRTHPWVIEANEVGRYMGQCTEFCGLSHAYMRMYAVVLSPEEWEEWVHGQIVDAAPLEPGDPGFEGQEVFLANCANCHVV 304 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig90024.20861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig90024.20861.1 >prot_M-pyrifera_M_contig90024.20861.1 ID=prot_M-pyrifera_M_contig90024.20861.1|Name=mRNA_M-pyrifera_M_contig90024.20861.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp WTILPAIVLAVVSVPTVISIWKLEEKNEPTELDVMVIGQQWWWEYRYDVDback to top mRNA from alignment at M-pyrifera_M_contig90024:166..795- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig90024.20861.1 ID=mRNA_M-pyrifera_M_contig90024.20861.1|Name=mRNA_M-pyrifera_M_contig90024.20861.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig90024:166..795- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig90024:166..795- >mRNA_M-pyrifera_M_contig90024.20861.1 ID=mRNA_M-pyrifera_M_contig90024.20861.1|Name=mRNA_M-pyrifera_M_contig90024.20861.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig90024:166..795- (Macrocystis pyrifera P11B4 male)back to top |