mRNA_M-pyrifera_M_contig89983.20853.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89983.20853.1
Unique NamemRNA_M-pyrifera_M_contig89983.20853.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89983.20853.1 vs. uniprot
Match: A0A7C2B262_9BACT (Glycosyltransferase family 1 protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2B262_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 8.550e-18
Identity = 51/120 (42.50%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:    1 LGVAANVHWIQDDPAAH-PELFGTATLFVAPGADERASSRWPCAALAAGLPILAADVERHRWAVAHEERGLLVPEQTRAAWEAALTRSATAPVARERWGRSARAFAEEHLDWAHIAARFE 357
            LG+ + V W+        P L G +TLF  P   +    R    ALA GLP+LA+D+ R R +V     GLLV      AW  A+ R+A++PVAR+RW R AR +AEEHL W  +A+ FE
Sbjct:  269 LGIGSRVTWLPRPRREELPGLMGASTLFAVPAVGDTVVGRQLGRALACGLPVLASDLPRLRDSVEDGRVGLLVEPGNVEAWVDAIGRAASSPVARKRWSREARRYAEEHLSWDRVASEFE 388
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89983.20853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C2B262_9BACT8.550e-1842.50Glycosyltransferase family 1 protein n=1 Tax=Planc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89983contigM-pyrifera_M_contig89983:431..796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816810.4606683-CDS-M-pyrifera_M_contig89983:430..7961622816810.4606683-CDS-M-pyrifera_M_contig89983:430..796Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89983 431..796 -
1692278191.968641-CDS-M-pyrifera_M_contig89983:430..7961692278191.968641-CDS-M-pyrifera_M_contig89983:430..796Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89983 431..796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89983.20853.1prot_M-pyrifera_M_contig89983.20853.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89983 431..796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89983.20853.1

>prot_M-pyrifera_M_contig89983.20853.1 ID=prot_M-pyrifera_M_contig89983.20853.1|Name=mRNA_M-pyrifera_M_contig89983.20853.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
LGVAANVHWIQDDPAAHPELFGTATLFVAPGADERASSRWPCAALAAGLP
ILAADVERHRWAVAHEERGLLVPEQTRAAWEAALTRSATAPVARERWGRS
ARAFAEEHLDWAHIAARFEALF
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mRNA from alignment at M-pyrifera_M_contig89983:431..796-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89983.20853.1 ID=mRNA_M-pyrifera_M_contig89983.20853.1|Name=mRNA_M-pyrifera_M_contig89983.20853.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig89983:431..796- (Macrocystis pyrifera P11B4 male)
CTGGGCGTCGCCGCCAACGTGCACTGGATCCAGGACGACCCCGCTGCGCA
CCCCGAGCTGTTCGGGACCGCGACGCTGTTCGTCGCGCCCGGCGCCGATG
AGCGCGCGTCCAGCCGCTGGCCGTGCGCAGCGCTCGCCGCCGGTCTGCCG
ATCCTGGCCGCGGACGTCGAGCGCCACCGCTGGGCCGTGGCCCACGAGGA
GCGTGGGCTGCTCGTGCCCGAGCAGACGCGCGCCGCATGGGAGGCCGCGC
TCACCCGCAGCGCAACGGCGCCCGTCGCCCGCGAGCGCTGGGGCCGGAGC
GCGCGCGCCTTTGCCGAGGAGCACCTGGACTGGGCGCACATCGCCGCGCG
CTTCGAAGCCCTGTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89983:431..796-

>mRNA_M-pyrifera_M_contig89983.20853.1 ID=mRNA_M-pyrifera_M_contig89983.20853.1|Name=mRNA_M-pyrifera_M_contig89983.20853.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig89983:431..796- (Macrocystis pyrifera P11B4 male)
CTGGGCGTCGCCGCCAACGTGCACTGGATCCAGGACGACCCCGCTGCGCA
CCCCGAGCTGTTCGGGACCGCGACGCTGTTCGTCGCGCCCGGCGCCGATG
AGCGCGCGTCCAGCCGCTGGCCGTGCGCAGCGCTCGCCGCCGGTCTGCCG
ATCCTGGCCGCGGACGTCGAGCGCCACCGCTGGGCCGTGGCCCACGAGGA
GCGTGGGCTGCTCGTGCCCGAGCAGACGCGCGCCGCATGGGAGGCCGCGC
TCACCCGCAGCGCAACGGCGCCCGTCGCCCGCGAGCGCTGGGGCCGGAGC
GCGCGCGCCTTTGCCGAGGAGCACCTGGACTGGGCGCACATCGCCGCGCG
CTTCGAAGCCCTGTTCCTGGGCGTCGCCGCCAACGTGCACTGGATCCAGG
ACGACCCCGCTGCGCACCCCGAGCTGTTCGGGACCGCGACGCTGTTCGTC
GCGCCCGGCGCCGATGAGCGCGCGTCCAGCCGCTGGCCGTGCGCAGCGCT
CGCCGCCGGTCTGCCGATCCTGGCCGCGGACGTCGAGCGCCACCGCTGGG
CCGTGGCCCACGAGGAGCGTGGGCTGCTCGTGCCCGAGCAGACGCGCGCC
GCATGGGAGGCCGCGCTCACCCGCAGCGCAACGGCGCCCGTCGCCCGCGA
GCGCTGGGGCCGGAGCGCGCGCGCCTTTGCCGAGGAGCACCTGGACTGGG
CGCACATCGCCGCGCGCTTCGAAGCCCTGTTC
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