mRNA_M-pyrifera_M_contig89983.20852.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89983.20852.1
Unique NamemRNA_M-pyrifera_M_contig89983.20852.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89983.20852.1 vs. uniprot
Match: A0A2D5AZI6_9BACT (Anti-sigma factor antagonist n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AZI6_9BACT)

HSP 1 Score: 180 bits (456), Expect = 2.970e-54
Identity = 84/126 (66.67%), Postives = 106/126 (84.13%), Query Frame = 1
Query:    1 EHFVE--RKEGMKNPLHGHDFGGKWRGIGRMSGLDADGVRFTWSGGNTGMNSFEMAQFLALGTDLKVKFRLPLLKKGMSEAIVTVTDIEERPDGVKIGASFSEIDDDTRQSVQQYAEDLRFLRKEL 372
            EHFV+  + +   NP+HGH FG KWRG+GRMS LDADG+RFTW+GGNTG+ SFEM Q L+LGTDL VKFRLPLL+KG  EA+VT++++EERPDGVK+ A+FSEI+ +TR +VQQYA D+ FL+KEL
Sbjct:  143 EHFVQASKSKAPTNPVHGHAFGSKWRGVGRMSALDADGLRFTWNGGNTGLTSFEMGQLLSLGTDLNVKFRLPLLQKGHCEAVVTISEVEERPDGVKLAATFSEIEPETRTAVQQYAADMAFLKKEL 268          
BLAST of mRNA_M-pyrifera_M_contig89983.20852.1 vs. uniprot
Match: A0A7C2B4C5_9BACT (Anti-sigma factor antagonist n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2B4C5_9BACT)

HSP 1 Score: 175 bits (444), Expect = 3.970e-52
Identity = 83/126 (65.87%), Postives = 103/126 (81.75%), Query Frame = 1
Query:    1 EHFVERKE--GMKNPLHGHDFGGKWRGIGRMSGLDADGVRFTWSGGNTGMNSFEMAQFLALGTDLKVKFRLPLLKKGMSEAIVTVTDIEERPDGVKIGASFSEIDDDTRQSVQQYAEDLRFLRKEL 372
            EHF+   E  G+ NP+HGH F   WRG+GRMS LD+DG+RF W+GG+TG++ FEM Q L+LGTDL VKFRLPLLKKG  EA VTV+++EERPDGVKI A+FSEIDD TR++V+QYA D+ FL+KEL
Sbjct:  169 EHFLPSAERSGVTNPVHGHSFASNWRGVGRMSALDSDGLRFVWNGGSTGLSPFEMGQMLSLGTDLHVKFRLPLLKKGHCEATVTVSEVEERPDGVKIAAAFSEIDDQTREAVKQYASDMAFLKKEL 294          
BLAST of mRNA_M-pyrifera_M_contig89983.20852.1 vs. uniprot
Match: A0A7Y4WIM3_9BACT (Anti-sigma factor antagonist n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7Y4WIM3_9BACT)

HSP 1 Score: 165 bits (417), Expect = 2.230e-48
Identity = 77/129 (59.69%), Postives = 100/129 (77.52%), Query Frame = 1
Query:    1 EHFVERKEGMKNPLHGHDFGGKWRGIGRMSGLDADGVRFTWSGGNTGMNSFEMAQFLALGTDLKVKFRLPLLKKGMSEAIVTVTDIEERPDGVKIGASFSEIDDDTRQSVQQYAEDLRFLRKELDSTKE 387
            EHF+  +    NP HG  FGG WRG+GRMS LD + +RFTW+GGN+G+  FEM Q L+LGTDL VKFRLPLLKKG  EA+VTV+++EERPDGVK+ A+FS+I+ +T  +V+QYA D+ FL++EL S  E
Sbjct:  143 EHFISEQARKANPAHGPGFGGNWRGVGRMSALDTESLRFTWNGGNSGLTPFEMGQMLSLGTDLIVKFRLPLLKKGHCEAVVTVSEVEERPDGVKLAATFSQIEPETLAAVKQYAADMAFLKRELRSATE 271          
BLAST of mRNA_M-pyrifera_M_contig89983.20852.1 vs. uniprot
Match: A0A518BJZ2_9BACT (Anti-sigma factor antagonist n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BJZ2_9BACT)

HSP 1 Score: 164 bits (415), Expect = 4.470e-48
Identity = 76/125 (60.80%), Postives = 97/125 (77.60%), Query Frame = 1
Query:    1 EHFVERKEGM-KNPLHGHDFGGKWRGIGRMSGLDADGVRFTWSGGNTGMNSFEMAQFLALGTDLKVKFRLPLLKKGMSEAIVTVTDIEERPDGVKIGASFSEIDDDTRQSVQQYAEDLRFLRKEL 372
            +HF+    G   NP+HGH+FG  WRG+GRMS +DA+G+RFTW GGNTGM  FE+ Q LALGT+LKVKFRLPLL+KG  + +  VT+IEERPDGVK+   F  +DD T+ +V+QYAED+ FL+KEL
Sbjct:  144 KHFLPASSGSGTNPVHGHEFGKNWRGVGRMSSVDAEGLRFTWDGGNTGMTPFELGQLLALGTELKVKFRLPLLRKGHVDGLAAVTEIEERPDGVKVAGRFHGLDDQTQAAVRQYAEDMAFLKKEL 268          
BLAST of mRNA_M-pyrifera_M_contig89983.20852.1 vs. uniprot
Match: A0A518EU56_9BACT (Anti-sigma factor antagonist n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EU56_9BACT)

HSP 1 Score: 160 bits (404), Expect = 1.880e-46
Identity = 77/123 (62.60%), Postives = 99/123 (80.49%), Query Frame = 1
Query:    4 HFVERKEGMKNPLHGHDFGGKWRGIGRMSGLDADGVRFTWSGGNTGMNSFEMAQFLALGTDLKVKFRLPLLKKGMSEAIVTVTDIEERPDGVKIGASFSEIDDDTRQSVQQYAEDLRFLRKEL 372
            HFVE+++  KNPLHGH FG  W GIGRMSGLD DG+RFTW+GG T + +F+M Q L++GT+L VKFRLPLL++G  EA VTV+ +EER DGVK+G  F EIDD+TR +V QYA+D+ FL++EL
Sbjct:  143 HFVEQEK-AKNPLHGHAFGDNWAGIGRMSGLDEDGLRFTWNGGKTDLTAFDMGQMLSVGTELLVKFRLPLLQRGYVEAKVTVSFLEERADGVKVGCRFVEIDDETRAAVGQYAQDMAFLKEEL 264          
BLAST of mRNA_M-pyrifera_M_contig89983.20852.1 vs. uniprot
Match: A0A523PU81_9BACT (Anti-sigma factor antagonist n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PU81_9BACT)

HSP 1 Score: 157 bits (397), Expect = 2.240e-45
Identity = 75/123 (60.98%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    4 HFVERKEGMKNPLHGHDFGGKWRGIGRMSGLDADGVRFTWSGGNTGMNSFEMAQFLALGTDLKVKFRLPLLKKGMSEAIVTVTDIEERPDGVKIGASFSEIDDDTRQSVQQYAEDLRFLRKEL 372
            HFV+  +  +NP+HGH FGG W GIGRMSGLD  G+ FTWSGG T +  F+M Q LA+GT L VKFRLPLL++G  EA V V  +EER D VK+GA F EIDDDTR++V+QYA+D+ FL++EL
Sbjct:  144 HFVKATKKAENPVHGHAFGGNWSGIGRMSGLDESGLLFTWSGGKTDLTPFDMGQMLAIGTQLAVKFRLPLLQRGYCEARVDVNLLEERADSVKVGAEFVEIDDDTREAVRQYAKDMAFLKEEL 266          
BLAST of mRNA_M-pyrifera_M_contig89983.20852.1 vs. uniprot
Match: A0A2D5W8U8_9BACT (Anti-sigma factor antagonist n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5W8U8_9BACT)

HSP 1 Score: 152 bits (385), Expect = 1.330e-43
Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 1
Query:    4 HFVERKEGMKNPLHGHDFGGKWRGIGRMSGLDADGVRFTWSGGNTGMNSFEMAQFLALGTDLKVKFRLPLLKKGMSEAIVTVTDIEERPDGVKIGASFSEIDDDTRQSVQQYAEDLRFLRKEL 372
            HF+E      NP+HGH FG  W G+GRM+ LD  G+ FTW+GGNTG++ F+M Q LALGT+LK+KFRLPL +KG  EA+  V D+EER DGV++G  FSEIDD+T  +V QYA+D+ FLR EL
Sbjct:  142 HFIEAAA-KANPVHGHSFGKNWSGVGRMAALDTSGLAFTWNGGNTGLSPFDMGQMLALGTELKLKFRLPLFQKGYCEALCRVEDLEERADGVRVGLRFSEIDDETVTAVGQYAKDMAFLRDEL 263          
BLAST of mRNA_M-pyrifera_M_contig89983.20852.1 vs. uniprot
Match: A0A7C8CVQ3_9BACT (Anti-sigma factor antagonist n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C8CVQ3_9BACT)

HSP 1 Score: 152 bits (383), Expect = 2.730e-43
Identity = 70/123 (56.91%), Postives = 92/123 (74.80%), Query Frame = 1
Query:    4 HFVERKEGMKNPLHGHDFGGKWRGIGRMSGLDADGVRFTWSGGNTGMNSFEMAQFLALGTDLKVKFRLPLLKKGMSEAIVTVTDIEERPDGVKIGASFSEIDDDTRQSVQQYAEDLRFLRKEL 372
            HFV       NP+HGH FG  W GIGRM+GLD   +RFTW+GGNT +  F MAQF ALGT+ K+KFRLPLL+KG  EA+  ++++EERPDG+K+ ASF EID +T+ +V+QYA D+ +L+ EL
Sbjct:  142 HFVAGDGKQTNPVHGHSFGEHWSGIGRMAGLDEKHLRFTWNGGNTDLEPFAMAQFTALGTEWKIKFRLPLLQKGYCEAVACISEVEERPDGIKVQASFKEIDAETQAAVKQYAADMAYLKDEL 264          
BLAST of mRNA_M-pyrifera_M_contig89983.20852.1 vs. uniprot
Match: A0A2D6HBR7_9BACT (Anti-sigma factor antagonist n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HBR7_9BACT)

HSP 1 Score: 152 bits (385), Expect = 2.880e-43
Identity = 67/113 (59.29%), Postives = 93/113 (82.30%), Query Frame = 1
Query:   34 NPLHGHDFGGKWRGIGRMSGLDADGVRFTWSGGNTGMNSFEMAQFLALGTDLKVKFRLPLLKKGMSEAIVTVTDIEERPDGVKIGASFSEIDDDTRQSVQQYAEDLRFLRKEL 372
            NP+HGH+FG +W GIGRMSGL  + + FTW GGNTG+++F MAQ LALGT+ K+KFRLPLL++G  EA+  V+++EER DGVK+ A+FS+ID++TR S++QYA D+ +L+ EL
Sbjct:  181 NPVHGHEFGSRWSGIGRMSGLSEESLSFTWGGGNTGLDAFRMAQLLALGTEWKIKFRLPLLQRGYCEAVAKVSEVEEREDGVKVEATFSDIDEETRASIRQYAADMSYLKDEL 293          
BLAST of mRNA_M-pyrifera_M_contig89983.20852.1 vs. uniprot
Match: A0A521KHH7_9BACT (Anti-sigma factor antagonist n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521KHH7_9BACT)

HSP 1 Score: 150 bits (379), Expect = 1.310e-42
Identity = 73/129 (56.59%), Postives = 101/129 (78.29%), Query Frame = 1
Query:    1 EHFV--ERKEGMK---NPLHGHDFGGKWRGIGRMSGLDADGVRFTWSGGNTGMNSFEMAQFLALGTDLKVKFRLPLLKKGMSEAIVTVTDIEERPDGVKIGASFSEIDDDTRQSVQQYAEDLRFLRKEL 372
            EHF+  + ++G+    +P  G    G W GIGRM+ LD +G+RFTW GGNTG+ +FEMAQFLA+GT+L++KF L LLKKGM EA+VTVT++EERPD VK+ A FS++DDD R++++QY++DL FL+ EL
Sbjct:  145 EHFIAEDLRKGVAIPFDPKSGKAGKGGWNGIGRMASLDRNGLRFTWGGGNTGLTAFEMAQFLAIGTELRLKFSLSLLKKGMVEAVVTVTEVEERPDSVKLRARFSKLDDDVRKAIEQYSQDLAFLKSEL 273          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89983.20852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A2D5AZI6_9BACT2.970e-5466.67Anti-sigma factor antagonist n=1 Tax=Planctomycete... [more]
A0A7C2B4C5_9BACT3.970e-5265.87Anti-sigma factor antagonist n=1 Tax=Planctomycete... [more]
A0A7Y4WIM3_9BACT2.230e-4859.69Anti-sigma factor antagonist n=1 Tax=Planctomycete... [more]
A0A518BJZ2_9BACT4.470e-4860.80Anti-sigma factor antagonist n=1 Tax=Planctomycete... [more]
A0A518EU56_9BACT1.880e-4662.60Anti-sigma factor antagonist n=1 Tax=Planctomycete... [more]
A0A523PU81_9BACT2.240e-4560.98Anti-sigma factor antagonist n=1 Tax=Planctomycete... [more]
A0A2D5W8U8_9BACT1.330e-4358.54Anti-sigma factor antagonist n=1 Tax=Planctomycete... [more]
A0A7C8CVQ3_9BACT2.730e-4356.91Anti-sigma factor antagonist n=1 Tax=Planctomycete... [more]
A0A2D6HBR7_9BACT2.880e-4359.29Anti-sigma factor antagonist n=1 Tax=Planctomycete... [more]
A0A521KHH7_9BACT1.310e-4256.59Anti-sigma factor antagonist n=1 Tax=Planctomycete... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89983contigM-pyrifera_M_contig89983:2..391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size363
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816810.4159136-UTR-M-pyrifera_M_contig89983:1..281622816810.4159136-UTR-M-pyrifera_M_contig89983:1..28Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89983 2..28 +
1692278191.9461634-UTR-M-pyrifera_M_contig89983:1..281692278191.9461634-UTR-M-pyrifera_M_contig89983:1..28Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89983 2..28 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816810.4275255-CDS-M-pyrifera_M_contig89983:28..3911622816810.4275255-CDS-M-pyrifera_M_contig89983:28..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89983 29..391 +
1692278191.9568214-CDS-M-pyrifera_M_contig89983:28..3911692278191.9568214-CDS-M-pyrifera_M_contig89983:28..391Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89983 29..391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89983.20852.1prot_M-pyrifera_M_contig89983.20852.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89983 29..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89983.20852.1

>prot_M-pyrifera_M_contig89983.20852.1 ID=prot_M-pyrifera_M_contig89983.20852.1|Name=mRNA_M-pyrifera_M_contig89983.20852.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MKNPLHGHDFGGKWRGIGRMSGLDADGVRFTWSGGNTGMNSFEMAQFLAL
GTDLKVKFRLPLLKKGMSEAIVTVTDIEERPDGVKIGASFSEIDDDTRQS
VQQYAEDLRFLRKELDSTKE*
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mRNA from alignment at M-pyrifera_M_contig89983:2..391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89983.20852.1 ID=mRNA_M-pyrifera_M_contig89983.20852.1|Name=mRNA_M-pyrifera_M_contig89983.20852.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig89983:2..391+ (Macrocystis pyrifera P11B4 male)
GAGCACTTCGTTGAGCGCAAGGAAGGCATGAAGAACCCGCTGCACGGCCA CGACTTCGGCGGCAAGTGGCGCGGGATCGGGCGCATGTCCGGCCTCGACG CGGACGGCGTGCGCTTCACGTGGAGCGGCGGCAACACGGGCATGAACTCG TTCGAGATGGCGCAGTTCCTCGCGCTCGGCACCGACCTCAAGGTCAAGTT CCGCCTGCCGCTGCTCAAGAAGGGCATGAGCGAGGCCATCGTCACCGTGA CCGACATCGAGGAGCGCCCCGACGGCGTCAAGATCGGCGCGAGCTTCAGC GAGATCGACGACGACACGCGCCAGTCCGTCCAACAGTACGCCGAGGACCT GCGCTTCCTGCGCAAGGAGCTCGACTCCACCAAGGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89983:2..391+

>mRNA_M-pyrifera_M_contig89983.20852.1 ID=mRNA_M-pyrifera_M_contig89983.20852.1|Name=mRNA_M-pyrifera_M_contig89983.20852.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig89983:2..391+ (Macrocystis pyrifera P11B4 male)
ATGAAGAACCCGCTGCACGGCCACGACTTCGGCGGCAAGTGGCGCGGGAT
CGGGCGCATGTCCGGCCTCGACGCGGACGGCGTGCGCTTCACGTGGAGCG
GCGGCAACACGGGCATGAACTCGTTCGAGATGGCGCAGTTCCTCGCGCTC
GGCACCGACCTCAAGGTCAAGTTCCGCCTGCCGCTGCTCAAGAAGGGCAT
GAGCGAGGCCATCGTCACCGTGACCGACATCGAGGAGCGCCCCGACGGCG
TCAAGATCGGCGCGAGCTTCAGCGAGATCGACGACGACACGCGCCAGTCC
GTCCAACAGTACGCCGAGGACCTGCGCTTCCTGCGCAAGGAGCTCGACTC
CACCAAGGAGTAGATGAAGAACCCGCTGCACGGCCACGACTTCGGCGGCA
AGTGGCGCGGGATCGGGCGCATGTCCGGCCTCGACGCGGACGGCGTGCGC
TTCACGTGGAGCGGCGGCAACACGGGCATGAACTCGTTCGAGATGGCGCA
GTTCCTCGCGCTCGGCACCGACCTCAAGGTCAAGTTCCGCCTGCCGCTGC
TCAAGAAGGGCATGAGCGAGGCCATCGTCACCGTGACCGACATCGAGGAG
CGCCCCGACGGCGTCAAGATCGGCGCGAGCTTCAGCGAGATCGACGACGA
CACGCGCCAGTCCGTCCAACAGTACGCCGAGGACCTGCGCTTCCTGCGCA
AGGAGCTCGACTCCACCAAGGAGTAG
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