mRNA_M-pyrifera_M_contig89954.20845.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89954.20845.1
Unique NamemRNA_M-pyrifera_M_contig89954.20845.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89954.20845.1 vs. uniprot
Match: UPI0018992F5B (thioredoxin n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI0018992F5B)

HSP 1 Score: 108 bits (269), Expect = 1.920e-28
Identity = 54/105 (51.43%), Postives = 76/105 (72.38%), Query Frame = 1
Query:   10 VKLVHSEGEFNNYMRGATG-LVVVDWSASWCGPCKMIYPYLVELSVQYT-DVLFLKVDVDELKGLADRNNVTAMPTFQFFRSLEMIHEIRGANPNILQEKVKELR 318
            VKL++S  EF+N +  A G LVVVD++A+WCGPCKMI P   ELS++Y   V+FLKVDVDE+  L  +  + +MPTFQF+++ + +HE  GAN + L +KV EL+
Sbjct:    2 VKLINSMAEFDNELATAGGKLVVVDFTATWCGPCKMIAPVFEELSIRYKGQVIFLKVDVDEVADLCQQCGIRSMPTFQFYKNGKKVHEFSGANQSKLHQKVDELK 106          
BLAST of mRNA_M-pyrifera_M_contig89954.20845.1 vs. uniprot
Match: A0A2I4C915_9TELE (Thioredoxin n=1 Tax=Austrofundulus limnaeus TaxID=52670 RepID=A0A2I4C915_9TELE)

HSP 1 Score: 106 bits (264), Expect = 1.070e-27
Identity = 49/104 (47.12%), Postives = 75/104 (72.12%), Query Frame = 1
Query:   10 VKLVHSEGEFNNYMRGATG-LVVVDWSASWCGPCKMIYPYLVELSVQYTDVLFLKVDVDELKGLADRNNVTAMPTFQFFRSLEMIHEIRGANPNILQEKVKELR 318
            V+ + S+ EF+  + GA G LVVVD++A+WCGPCK I P+L EL  Q+TDV+F+KVDVD++  ++    ++ MPTFQF+++ + + E  GAN + L+ KV EL+
Sbjct:    2 VRHIESKDEFDGVLSGAGGKLVVVDFTATWCGPCKAIAPFLDELEKQFTDVIFIKVDVDDVPDVSSSCGISCMPTFQFYKNXQKVFEFSGANRDTLKAKVAELQ 105          
BLAST of mRNA_M-pyrifera_M_contig89954.20845.1 vs. uniprot
Match: A0A8D0E570_9SAUR (Thioredoxin n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0E570_9SAUR)

HSP 1 Score: 107 bits (267), Expect = 1.550e-27
Identity = 51/105 (48.57%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    4 KNVKLVHSEGEFNNYMRGATG-LVVVDWSASWCGPCKMIYPYLVELSVQYTDVLFLKVDVDELKGLADRNNVTAMPTFQFFRSLEMIHEIRGANPNILQEKVKEL 315
            K VK+V +  EFN  +  ATG L+VVD+SA+WCGPCKMI P+   L+ +Y DV+F+++DVD+ + +A   +V  MPTFQF+++ E +HE  GAN   L+E +K L
Sbjct:   39 KMVKIVGNLTEFNAELASATGKLIVVDFSATWCGPCKMIKPFYHSLAEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEETIKNL 143          
BLAST of mRNA_M-pyrifera_M_contig89954.20845.1 vs. uniprot
Match: UPI001B7DE56C (thioredoxin-like n=2 Tax=Acipenseroidei TaxID=186622 RepID=UPI001B7DE56C)

HSP 1 Score: 104 bits (260), Expect = 4.360e-27
Identity = 48/98 (48.98%), Postives = 73/98 (74.49%), Query Frame = 1
Query:   10 VKLVHSEGEFNNYMRGA-TGLVVVDWSASWCGPCKMIYPYLVELSVQYTDVLFLKVDVDELKGLADRNNVTAMPTFQFFRSLEMIHEIRGANPNILQE 300
            V+ + ++G+F   +R A + LV+VD++A+WCGPCKMI P    L+ Q+ DV+FLKVDVD+ + +A+  NV++MPTFQFF++ +M+ E  GAN + LQE
Sbjct:    2 VRFIENKGDFEEALRDAGSKLVIVDFTATWCGPCKMISPIFESLAEQHKDVVFLKVDVDDAQDVAEMCNVSSMPTFQFFKNGQMVEEFSGANKDKLQE 99          
BLAST of mRNA_M-pyrifera_M_contig89954.20845.1 vs. uniprot
Match: A0A670K9R4_PODMU (Thioredoxin domain containing 8 n=4 Tax=Lacertinae TaxID=162266 RepID=A0A670K9R4_PODMU)

HSP 1 Score: 103 bits (258), Expect = 7.180e-27
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = 1
Query:   34 EFNNYMRGA-TGLVVVDWSASWCGPCKMIYPYLVELSVQYTDVLFLKVDVDELKGLADRNNVTAMPTFQFFRSLEMIHEIRGANPNILQEKVKEL 315
            +FN+ ++ A   LVVVD+SA WCGPCKMI P + EL+V+Y +VLF  VDVD  + +AD  N+ AMPTFQF+   E I EI GA P  L+EK+KEL
Sbjct:    3 KFNDLLKNAGPKLVVVDFSAKWCGPCKMIRPLVHELAVRYENVLFCIVDVDLAEDVADLCNIVAMPTFQFYMKGEKIFEITGARPKKLEEKIKEL 97          
BLAST of mRNA_M-pyrifera_M_contig89954.20845.1 vs. uniprot
Match: UPI001C4C78FD (thioredoxin n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4C78FD)

HSP 1 Score: 104 bits (259), Expect = 8.000e-27
Identity = 55/101 (54.46%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   16 LVHSEGEFNNYMRGA-TGLVVVDWSASWCGPCKMIYPYLVELSVQYTDVLFLKVDVDELKGLADRNNVTAMPTFQFFRSLEMIHEIRGANPNILQEKVKEL 315
            LV  E EF  ++  A   LVV+D+SA WCGPCKMI P   EL+V+Y +VLF  VDVD  K +AD  N+ AMPTFQFF   E I E+ GAN   L++K+KEL
Sbjct:   13 LVAGEKEFEKFLENAGPRLVVIDFSAKWCGPCKMIRPAFHELAVRYENVLFGIVDVDLAKDVADLCNIAAMPTFQFFMKGEKIFELTGANAKKLEKKIKEL 113          
BLAST of mRNA_M-pyrifera_M_contig89954.20845.1 vs. uniprot
Match: A5E6L1_LODEL (Thioredoxin n=1 Tax=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) TaxID=379508 RepID=A5E6L1_LODEL)

HSP 1 Score: 103 bits (257), Expect = 1.210e-26
Identity = 49/100 (49.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   10 VKLVHSEGEFNNYMRGATGLVVVDWSASWCGPCKMIYPYLVELSVQYTDVLFLKVDVDELKGLADRNNVTAMPTFQFFRSLEMIHEIRGANPNILQEKVK 309
            V  V S  EF + ++   GLVVVD+ A+WCGPCKMI P L + S QYT+V FLKVDVD ++ LA +  VT+MPT  FF++ E+I ++ GANP+ +++ ++
Sbjct:    2 VSQVSSAKEFEDTIKSFQGLVVVDFFATWCGPCKMIAPLLEKFSTQYTEVKFLKVDVDAVQELAQQYQVTSMPTLLFFKNGEVIEKVIGANPSAIKKAIE 101          
BLAST of mRNA_M-pyrifera_M_contig89954.20845.1 vs. uniprot
Match: A0A1D1YAN4_9ARAE (Thioredoxin-1 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YAN4_9ARAE)

HSP 1 Score: 103 bits (258), Expect = 1.350e-26
Identity = 50/102 (49.02%), Postives = 73/102 (71.57%), Query Frame = 1
Query:   16 LVHSEGEFNNYMRGATG-LVVVDWSASWCGPCKMIYPYLVELSVQYTDVLFLKVDVDELKGLADRNNVTAMPTFQFFRSLEMIHEIRGANPNILQEKVKELR 318
            +V SE  F+  +   T  L+VVD+ A WCGPCKMI P  V+L+ ++TDV FLKVDVD L G+A ++ VTAMPTF++F + + + E+ GA+P  + EK++EL+
Sbjct:   10 IVGSESTFDEIIANETNKLIVVDFYADWCGPCKMIAPLFVKLAGEHTDVKFLKVDVDALTGVAGKHKVTAMPTFKYFYNRKEVGEVIGAHPQKIGEKIEELK 111          
BLAST of mRNA_M-pyrifera_M_contig89954.20845.1 vs. uniprot
Match: UPI001CF7B515 (thioredoxin-like n=1 Tax=Varanus komodoensis TaxID=61221 RepID=UPI001CF7B515)

HSP 1 Score: 102 bits (255), Expect = 2.510e-26
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   19 VHSEGEFNNYMRGA-TGLVVVDWSASWCGPCKMIYPYLVELSVQYTDVLFLKVDVDELKGLADRNNVTAMPTFQFFRSLEMIHEIRGANPNILQEKVKEL 315
            +H + EF  +++ A   LVV D+SA WCGPCKMI P++  L+V+Y +VLF  VDVD    +AD  ++ +MPTFQFF   E I EI GAN   L+EK+KEL
Sbjct:    5 IHDQKEFKEFLKSAGPHLVVADFSAKWCGPCKMIRPFVHGLAVRYENVLFCNVDVDLAGDVADLCHIVSMPTFQFFMRGEKIFEITGANAKKLEEKIKEL 104          
BLAST of mRNA_M-pyrifera_M_contig89954.20845.1 vs. uniprot
Match: UPI002026898A (thioredoxin-like n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI002026898A)

HSP 1 Score: 102 bits (255), Expect = 2.510e-26
Identity = 49/104 (47.12%), Postives = 70/104 (67.31%), Query Frame = 1
Query:   10 VKLVHSEGEFNNYMRGATG-LVVVDWSASWCGPCKMIYPYLVELSVQYTDVLFLKVDVDELKGLADRNNVTAMPTFQFFRSLEMIHEIRGANPNILQEKVKELR 318
            VK + S  EFN  +  A G LVVVD+SA+WCGPCKMI P+   L  +Y DV+F ++DVD+ + +A   +V  MPTFQF+++ E +HE  GAN   L+E + +L+
Sbjct:    2 VKAIGSLVEFNTELESAVGKLVVVDFSATWCGPCKMIKPFFHSLIEKYPDVIFFEIDVDDAQDVAAHCDVKCMPTFQFYKNKEKVHEFSGANKEKLEETIMKLK 105          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89954.20845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0018992F5B1.920e-2851.43thioredoxin n=1 Tax=Nematolebias whitei TaxID=4517... [more]
A0A2I4C915_9TELE1.070e-2747.12Thioredoxin n=1 Tax=Austrofundulus limnaeus TaxID=... [more]
A0A8D0E570_9SAUR1.550e-2748.57Thioredoxin n=1 Tax=Salvator merianae TaxID=96440 ... [more]
UPI001B7DE56C4.360e-2748.98thioredoxin-like n=2 Tax=Acipenseroidei TaxID=1866... [more]
A0A670K9R4_PODMU7.180e-2755.79Thioredoxin domain containing 8 n=4 Tax=Lacertinae... [more]
UPI001C4C78FD8.000e-2754.46thioredoxin n=1 Tax=Sceloporus undulatus TaxID=852... [more]
A5E6L1_LODEL1.210e-2649.00Thioredoxin n=1 Tax=Lodderomyces elongisporus (str... [more]
A0A1D1YAN4_9ARAE1.350e-2649.02Thioredoxin-1 n=1 Tax=Anthurium amnicola TaxID=167... [more]
UPI001CF7B5152.510e-2651.00thioredoxin-like n=1 Tax=Varanus komodoensis TaxID... [more]
UPI002026898A2.510e-2647.12thioredoxin-like n=1 Tax=Sphaerodactylus townsendi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89954contigM-pyrifera_M_contig89954:226..543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score104.4
Seed ortholog evalue3.4e-20
Seed eggNOG ortholog28377.ENSACAP00000023334
Preferred nameTXNDC8
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Thioredoxin
EggNOG OGs3A886@33154,3BSYW@33208,3DH4S@33213,48G3A@7711,49D27@7742,COG0526@1,KOG0907@2759
COG Functional cat.O
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816810.1507416-CDS-M-pyrifera_M_contig89954:225..5431622816810.1507416-CDS-M-pyrifera_M_contig89954:225..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89954 226..543 -
1692278191.8297899-CDS-M-pyrifera_M_contig89954:225..5431692278191.8297899-CDS-M-pyrifera_M_contig89954:225..543Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89954 226..543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89954.20845.1prot_M-pyrifera_M_contig89954.20845.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89954 226..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89954.20845.1

>prot_M-pyrifera_M_contig89954.20845.1 ID=prot_M-pyrifera_M_contig89954.20845.1|Name=mRNA_M-pyrifera_M_contig89954.20845.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
PKNVKLVHSEGEFNNYMRGATGLVVVDWSASWCGPCKMIYPYLVELSVQY
TDVLFLKVDVDELKGLADRNNVTAMPTFQFFRSLEMIHEIRGANPNILQE
KVKELR
back to top

mRNA from alignment at M-pyrifera_M_contig89954:226..543-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89954.20845.1 ID=mRNA_M-pyrifera_M_contig89954.20845.1|Name=mRNA_M-pyrifera_M_contig89954.20845.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig89954:226..543- (Macrocystis pyrifera P11B4 male)
CCCAAGAACGTGAAGCTCGTGCACTCGGAAGGGGAATTCAACAACTACAT GCGCGGCGCAACTGGCCTTGTGGTGGTCGACTGGTCTGCCAGCTGGTGTG GGCCATGCAAGATGATCTACCCCTACTTGGTGGAGCTGAGTGTGCAGTAC ACGGACGTGCTGTTCCTCAAGGTGGACGTCGACGAGCTGAAGGGCCTGGC CGACCGTAACAACGTCACCGCCATGCCCACCTTCCAGTTCTTCCGCAGCC TCGAGATGATCCACGAGATCCGCGGCGCAAACCCCAACATTCTCCAGGAG AAGGTGAAGGAGCTCCGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig89954:226..543-

>mRNA_M-pyrifera_M_contig89954.20845.1 ID=mRNA_M-pyrifera_M_contig89954.20845.1|Name=mRNA_M-pyrifera_M_contig89954.20845.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig89954:226..543- (Macrocystis pyrifera P11B4 male)
CCCAAGAACGTGAAGCTCGTGCACTCGGAAGGGGAATTCAACAACTACAT
GCGCGGCGCAACTGGCCTTGTGGTGGTCGACTGGTCTGCCAGCTGGTGTG
GGCCATGCAAGATGATCTACCCCTACTTGGTGGAGCTGAGTGTGCAGTAC
ACGGACGTGCTGTTCCTCAAGGTGGACGTCGACGAGCTGAAGGGCCTGGC
CGACCGTAACAACGTCACCGCCATGCCCACCTTCCAGTTCTTCCGCAGCC
TCGAGATGATCCACGAGATCCGCGGCGCAAACCCCAACATTCTCCAGGAG
AAGGTGAAGGAGCTCCGCCCCAAGAACGTGAAGCTCGTGCACTCGGAAGG
GGAATTCAACAACTACATGCGCGGCGCAACTGGCCTTGTGGTGGTCGACT
GGTCTGCCAGCTGGTGTGGGCCATGCAAGATGATCTACCCCTACTTGGTG
GAGCTGAGTGTGCAGTACACGGACGTGCTGTTCCTCAAGGTGGACGTCGA
CGAGCTGAAGGGCCTGGCCGACCGTAACAACGTCACCGCCATGCCCACCT
TCCAGTTCTTCCGCAGCCTCGAGATGATCCACGAGATCCGCGGCGCAAAC
CCCAACATTCTCCAGGAGAAGGTGAAGGAGCTCCGC
back to top