mRNA_M-pyrifera_M_contig89838.20829.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89838.20829.1
Unique NamemRNA_M-pyrifera_M_contig89838.20829.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89838.20829.1 vs. uniprot
Match: A0A0A9WYH8_LYGHE (DNA excision repair protein haywire n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WYH8_LYGHE)

HSP 1 Score: 123 bits (309), Expect = 1.220e-32
Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 1 
Query:    1 LESASPLYRQARDLLVAVSEPVTRPDHIHEYKLDADALVAAASMGLDGDSIISALERFSKVWLTEGVKAFIQRCTENYGKAKLVLMRGGYRIESDYPEVLERLAREQVVRE 333
            LES SPLYR A D L+A++EPV RP+HIHEYKL A +L AA S+GL+ D II  L R SK  + EG+  FI+ CT +YGK KLVL    Y IES +PEVL++L ++ V++E
Sbjct:   94 LESFSPLYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETDDIIEYLRRLSKTSMPEGIVEFIKLCTLSYGKVKLVLKHNKYFIESPFPEVLQKLLKDPVIQE 204
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BLAST of mRNA_M-pyrifera_M_contig89838.20829.1 vs. uniprot
Match: A0A161MNL4_TRIIF (Dna excision repair protein haywire (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A161MNL4_TRIIF)

HSP 1 Score: 115 bits (289), Expect = 9.270e-31
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:    1 LESASPLYRQARDLLVAVSEPVTRPDHIHEYKLDADALVAAASMGLDGDSIISALERFSKVWLTEGVKAFIQRCTENYGKAKLVLMRGGYRIESDYPEVLERLAREQVVRE 333
            LES SP+Y+ A D L+A+SEPV RP+HI EYKL A +L AA S+GL+ + II  L R SK  + EG+  FI+ CT +YGK KLVL    Y IES +P+VL++L ++ V++E
Sbjct:   43 LESFSPVYKHAHDFLIAISEPVCRPEHIQEYKLTAYSLYAAVSVGLETNDIIEYLRRLSKTSIPEGIIEFIKLCTLSYGKVKLVLKHNKYFIESPFPDVLQKLLKDPVIQE 153
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BLAST of mRNA_M-pyrifera_M_contig89838.20829.1 vs. uniprot
Match: A0A812RKQ7_9DINO (DNA helicase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RKQ7_9DINO)

HSP 1 Score: 124 bits (311), Expect = 9.590e-31
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:    1 LESASPLYRQARDLLVAVSEPVTRPDHIHEYKLDADALVAAASMGLDGDSIISALERFSKVWLTEGVKAFIQRCTENYGKAKLVLMRGGYRIESDYPEVLERLAREQVVRE 333
            LE+ SPLY QARD LVA+ EP +RP+ IHEY LD  AL AAASMGL GD I  AL+RFSK  +++GV+ F++ CT  YGK KLVL R  + +ES Y  +L  LA + VVRE
Sbjct:   68 LEAFSPLYEQARDFLVAICEPKSRPEFIHEYALDRHALFAAASMGLTGDLICDALQRFSKCRVSQGVQTFVRACTSGYGKVKLVLHRSRFYVESPYSALLRSLAADPVVRE 178
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BLAST of mRNA_M-pyrifera_M_contig89838.20829.1 vs. uniprot
Match: A0A146LTX2_LYGHE (General transcription and DNA repair factor IIH helicase subunit XPB n=4 Tax=Lygus hesperus TaxID=30085 RepID=A0A146LTX2_LYGHE)

HSP 1 Score: 123 bits (309), Expect = 1.740e-30
Identity = 62/111 (55.86%), Postives = 80/111 (72.07%), Query Frame = 1 
Query:    1 LESASPLYRQARDLLVAVSEPVTRPDHIHEYKLDADALVAAASMGLDGDSIISALERFSKVWLTEGVKAFIQRCTENYGKAKLVLMRGGYRIESDYPEVLERLAREQVVRE 333
            LES SPLYR A D L+A++EPV RP+HIHEYKL A +L AA S+GL+ D II  L R SK  + EG+  FI+ CT +YGK KLVL    Y IES +PEVL++L ++ V++E
Sbjct:   94 LESFSPLYRHAHDFLIAIAEPVCRPEHIHEYKLTAYSLYAAVSVGLETDDIIEYLRRLSKTSMPEGIVEFIKLCTLSYGKVKLVLKHNKYFIESPFPEVLQKLLKDPVIQE 204
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BLAST of mRNA_M-pyrifera_M_contig89838.20829.1 vs. uniprot
Match: A0A1B6MEN8_9HEMI (Helicase_C_3 domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6MEN8_9HEMI)

HSP 1 Score: 117 bits (293), Expect = 2.820e-30
Identity = 56/111 (50.45%), Postives = 80/111 (72.07%), Query Frame = 1 
Query:    1 LESASPLYRQARDLLVAVSEPVTRPDHIHEYKLDADALVAAASMGLDGDSIISALERFSKVWLTEGVKAFIQRCTENYGKAKLVLMRGGYRIESDYPEVLERLAREQVVRE 333
            LES SP+Y+ A D L+A+SEPV RP+HIHEYKL A +L AA S+GL+   I+  ++R SK  + +G+  FI+ CT +YGK KLVL    Y +ES +PEVL++L ++ V++E
Sbjct:   91 LESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIVEYIKRLSKTTVPDGIVEFIKLCTLSYGKVKLVLKHNKYFVESPFPEVLQKLLKDPVIQE 201
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BLAST of mRNA_M-pyrifera_M_contig89838.20829.1 vs. uniprot
Match: A0A1B6CB72_9HEMI (Helicase_C_3 domain-containing protein n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CB72_9HEMI)

HSP 1 Score: 118 bits (296), Expect = 4.690e-30
Identity = 58/111 (52.25%), Postives = 80/111 (72.07%), Query Frame = 1 
Query:    1 LESASPLYRQARDLLVAVSEPVTRPDHIHEYKLDADALVAAASMGLDGDSIISALERFSKVWLTEGVKAFIQRCTENYGKAKLVLMRGGYRIESDYPEVLERLAREQVVRE 333
            LES SP+Y+ A D L+A+SEPV RP+HIHEYKL A +L AA S+GL+   II  L+R SK  + +G+  FI+ CT +YGK KLVL    Y +ES +PEVL++L ++ V++E
Sbjct:   92 LESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLETHDIIEYLKRLSKTSIPDGIVEFIKLCTLSYGKVKLVLKHNKYFVESPFPEVLQKLLKDPVIQE 202
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BLAST of mRNA_M-pyrifera_M_contig89838.20829.1 vs. uniprot
Match: A0A811UYJ1_CERCA ((Mediterranean fruit fly) hypothetical protein n=1 Tax=Ceratitis capitata TaxID=7213 RepID=A0A811UYJ1_CERCA)

HSP 1 Score: 117 bits (292), Expect = 1.050e-29
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:    1 LESASPLYRQARDLLVAVSEPVTRPDHIHEYKLDADALVAAASMGLDGDSIISALERFSKVWLTEGVKAFIQRCTENYGKAKLVLMRGGYRIESDYPEVLERLAREQVVRE 333
            LES SP+Y+ A D L+A+SEPV RP+HIHEYKL A +L AA S+GL    II  L+R SK  + EG+  FI+ CT +YGK KLVL    Y IES +PE+L++L ++ V+++
Sbjct:   35 LESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTHDIIEYLKRLSKTSIPEGIIEFIKLCTLSYGKVKLVLKHNRYFIESPHPEILQKLLKDPVIQQ 145
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BLAST of mRNA_M-pyrifera_M_contig89838.20829.1 vs. uniprot
Match: A0A6H5HJ44_9HEMI (DNA helicase n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HJ44_9HEMI)

HSP 1 Score: 121 bits (303), Expect = 1.080e-29
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 1 
Query:    1 LESASPLYRQARDLLVAVSEPVTRPDHIHEYKLDADALVAAASMGLDGDSIISALERFSKVWLTEGVKAFIQRCTENYGKAKLVLMRGGYRIESDYPEVLERLAREQVVRE 333
            LES SP+Y+ A D L+A+SEPV RP+HIHEYKL A +L AA S+GL+ D II  L R SK  + +G+  FI+ CT +YGK KLVL    Y IES +PEVL++L ++ V++E
Sbjct:   91 LESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLETDDIIEYLRRLSKTSIPDGIVEFIKLCTLSYGKVKLVLKHNKYFIESPFPEVLQKLLKDPVIQE 201
[Close]
BLAST of mRNA_M-pyrifera_M_contig89838.20829.1 vs. uniprot
Match: A0A6A4X0A9_AMPAM (General transcription and DNA repair factor IIH helicase subunit XPB n=5 Tax=Thoracicalcarea TaxID=2899756 RepID=A0A6A4X0A9_AMPAM)

HSP 1 Score: 121 bits (303), Expect = 1.120e-29
Identity = 60/109 (55.05%), Postives = 79/109 (72.48%), Query Frame = 1 
Query:    1 LESASPLYRQARDLLVAVSEPVTRPDHIHEYKLDADALVAAASMGLDGDSIISALERFSKVWLTEGVKAFIQRCTENYGKAKLVLMRGGYRIESDYPEVLERLAREQVV 327
            LES SP+YR A D L+A+SEPV RP+HIHEYKL A +L AA S+GL  D II  L+R SK  + +G+  FI+ CT +YGKAKLVL    Y IES +PEV+++L ++ V+
Sbjct:   82 LESFSPVYRHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTDDIIEYLKRLSKTSIPDGIIEFIRLCTVSYGKAKLVLKHNRYFIESQHPEVIQKLLKDPVI 190
[Close]
BLAST of mRNA_M-pyrifera_M_contig89838.20829.1 vs. uniprot
Match: A0A1A9Z3I2_GLOPL (General transcription and DNA repair factor IIH helicase subunit XPB n=5 Tax=Glossina TaxID=7393 RepID=A0A1A9Z3I2_GLOPL)

HSP 1 Score: 121 bits (303), Expect = 1.150e-29
Identity = 61/111 (54.95%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:    1 LESASPLYRQARDLLVAVSEPVTRPDHIHEYKLDADALVAAASMGLDGDSIISALERFSKVWLTEGVKAFIQRCTENYGKAKLVLMRGGYRIESDYPEVLERLAREQVVRE 333
            LES SP+Y+ A DLL+A+SEPV RP+HIHEYKL A +L AA S+GL    II  L R SK  + EG+  FI+ CT +YGK KLVL    Y IES YPE+L++L R+ V+++
Sbjct:  102 LESFSPIYKHAHDLLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTHDIIEYLRRLSKTTVPEGILEFIKLCTLSYGKVKLVLKYNRYFIESPYPEILQKLLRDPVIQQ 212
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89838.20829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A9WYH8_LYGHE1.220e-3255.86DNA excision repair protein haywire n=1 Tax=Lygus ... [more]
A0A161MNL4_TRIIF9.270e-3152.25Dna excision repair protein haywire (Fragment) n=1... [more]
A0A812RKQ7_9DINO9.590e-3157.66DNA helicase n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A146LTX2_LYGHE1.740e-3055.86General transcription and DNA repair factor IIH he... [more]
A0A1B6MEN8_9HEMI2.820e-3050.45Helicase_C_3 domain-containing protein (Fragment) ... [more]
A0A1B6CB72_9HEMI4.690e-3052.25Helicase_C_3 domain-containing protein n=1 Tax=Cla... [more]
A0A811UYJ1_CERCA1.050e-2952.25(Mediterranean fruit fly) hypothetical protein n=1... [more]
A0A6H5HJ44_9HEMI1.080e-2954.05DNA helicase n=1 Tax=Nesidiocoris tenuis TaxID=355... [more]
A0A6A4X0A9_AMPAM1.120e-2955.05General transcription and DNA repair factor IIH he... [more]
A0A1A9Z3I2_GLOPL1.150e-2954.95General transcription and DNA repair factor IIH he... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89838contigM-pyrifera_M_contig89838:2..334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score120.6
Seed ortholog evalue4.8e-25
Seed eggNOG ortholog103372.F4WR81
Preferred namehay
KEGG koko:K10843,ko:K11270
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0003674,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006352,GO:0006355,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016043,GO:0016070,GO:0016462,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0034367,GO:0034641,GO:0034645,GO:0034654,GO:0040008,GO:0042127,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051101,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903025,GO:1903506,GO:1990234,GO:2000112,GO:2000677,GO:2001141
EggNOG free text desc.Helicase conserved C-terminal domain
EggNOG OGs38CR5@33154,3BC9I@33208,3CXEM@33213,3SJX8@50557,41UN1@6656,46HIZ@7399,COG1061@1,KOG1123@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816809.4017155-CDS-M-pyrifera_M_contig89838:1..3341622816809.4017155-CDS-M-pyrifera_M_contig89838:1..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89838 2..334 +
1692278191.3572605-CDS-M-pyrifera_M_contig89838:1..3341692278191.3572605-CDS-M-pyrifera_M_contig89838:1..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89838 2..334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89838.20829.1prot_M-pyrifera_M_contig89838.20829.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89838 2..334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89838.20829.1

>prot_M-pyrifera_M_contig89838.20829.1 ID=prot_M-pyrifera_M_contig89838.20829.1|Name=mRNA_M-pyrifera_M_contig89838.20829.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
LESASPLYRQARDLLVAVSEPVTRPDHIHEYKLDADALVAAASMGLDGDS
IISALERFSKVWLTEGVKAFIQRCTENYGKAKLVLMRGGYRIESDYPEVL
ERLAREQVVRE
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mRNA from alignment at M-pyrifera_M_contig89838:2..334+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89838.20829.1 ID=mRNA_M-pyrifera_M_contig89838.20829.1|Name=mRNA_M-pyrifera_M_contig89838.20829.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig89838:2..334+ (Macrocystis pyrifera P11B4 male)
TTGGAGTCTGCTTCCCCTTTGTACAGGCAAGCTCGTGATTTATTGGTTGC
AGTTTCTGAGCCTGTCACCCGTCCTGATCACATTCATGAGTACAAATTGG
ATGCAGATGCTTTGGTAGCTGCAGCATCTATGGGGCTTGACGGCGATTCG
ATTATTTCTGCATTGGAGCGCTTTTCCAAAGTATGGTTGACAGAAGGAGT
AAAAGCTTTTATTCAAAGATGTACAGAAAACTATGGAAAAGCCAAGCTGG
TGCTCATGCGTGGCGGGTATCGCATCGAAAGCGACTACCCTGAAGTTTTG
GAGCGTCTTGCACGAGAACAAGTGGTTCGTGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89838:2..334+

>mRNA_M-pyrifera_M_contig89838.20829.1 ID=mRNA_M-pyrifera_M_contig89838.20829.1|Name=mRNA_M-pyrifera_M_contig89838.20829.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig89838:2..334+ (Macrocystis pyrifera P11B4 male)
TTGGAGTCTGCTTCCCCTTTGTACAGGCAAGCTCGTGATTTATTGGTTGC
AGTTTCTGAGCCTGTCACCCGTCCTGATCACATTCATGAGTACAAATTGG
ATGCAGATGCTTTGGTAGCTGCAGCATCTATGGGGCTTGACGGCGATTCG
ATTATTTCTGCATTGGAGCGCTTTTCCAAAGTATGGTTGACAGAAGGAGT
AAAAGCTTTTATTCAAAGATGTACAGAAAACTATGGAAAAGCCAAGCTGG
TGCTCATGCGTGGCGGGTATCGCATCGAAAGCGACTACCCTGAAGTTTTG
GAGCGTCTTGCACGAGAACAAGTGGTTCGTGAATTGGAGTCTGCTTCCCC
TTTGTACAGGCAAGCTCGTGATTTATTGGTTGCAGTTTCTGAGCCTGTCA
CCCGTCCTGATCACATTCATGAGTACAAATTGGATGCAGATGCTTTGGTA
GCTGCAGCATCTATGGGGCTTGACGGCGATTCGATTATTTCTGCATTGGA
GCGCTTTTCCAAAGTATGGTTGACAGAAGGAGTAAAAGCTTTTATTCAAA
GATGTACAGAAAACTATGGAAAAGCCAAGCTGGTGCTCATGCGTGGCGGG
TATCGCATCGAAAGCGACTACCCTGAAGTTTTGGAGCGTCTTGCACGAGA
ACAAGTGGTTCGTGAA
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