mRNA_M-pyrifera_M_contig89823.20823.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89823.20823.1
Unique NamemRNA_M-pyrifera_M_contig89823.20823.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89823.20823.1 vs. uniprot
Match: A0A7S1G4L1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4L1_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.050e-6
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 RLHFLACTSCGATRSVAPIRSGFSAVRRGERRKAR 105
            RL+F+ C +CG+ RSVAPI++GF AV RG+RRKAR
Sbjct:  159 RLYFMNCKTCGSNRSVAPIKAGFRAVGRGDRRKAR 193
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BLAST of mRNA_M-pyrifera_M_contig89823.20823.1 vs. uniprot
Match: A0A7S1G6Z3_9STRA (Hypothetical protein n=3 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6Z3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.480e-6
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 RLHFLACTSCGATRSVAPIRSGFSAVRRGERRKAR 105
            RL+F+ C +CG+ RSVAPI++GF AV RG+RRKAR
Sbjct:  209 RLYFMNCKTCGSNRSVAPIKAGFRAVGRGDRRKAR 243
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BLAST of mRNA_M-pyrifera_M_contig89823.20823.1 vs. uniprot
Match: A0A7S2J844_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2J844_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 1.830e-6
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 RLHFLACTSCGATRSVAPIRSGFSAVRRGERRKAR 105
            RL+F+ C +CGA RSVAPI++GF A+ RG R+KA+
Sbjct:   64 RLYFMQCNNCGARRSVAPIKTGFVAISRGARKKAK 98
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BLAST of mRNA_M-pyrifera_M_contig89823.20823.1 vs. uniprot
Match: A0A448ZRK0_9STRA (eIF2B_5 domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZRK0_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 6.970e-6
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 RLHFLACTSCGATRSVAPIRSGFSAVRRGERRKAR 105
            RLHFL C+ CG+TRSVA IRSG+ A  R +RR AR
Sbjct:  195 RLHFLECSDCGSTRSVAQIRSGYHATSRADRRAAR 229
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BLAST of mRNA_M-pyrifera_M_contig89823.20823.1 vs. uniprot
Match: A0A1E7FM54_9STRA (eIF-5_eIF-2B-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FM54_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 7.140e-6
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 RLHFLACTSCGATRSVAPIRSGFSAVRRGERRKAR 105
            RLHFL C+ CG+TRSVA IRSG+ A  R +RR AR
Sbjct:  200 RLHFLECSDCGSTRSVAQIRSGYHATSRADRRAAR 234
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BLAST of mRNA_M-pyrifera_M_contig89823.20823.1 vs. uniprot
Match: A0A7S4AIX6_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AIX6_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.530e-6
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 RLHFLACTSCGATRSVAPIRSGFSAVRRGERRKAR 105
            RLHFL C+ CG+TRSVA IRSG+ A  R +RR AR
Sbjct:  343 RLHFLECSDCGSTRSVAQIRSGYHATSRADRRAAR 377
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BLAST of mRNA_M-pyrifera_M_contig89823.20823.1 vs. uniprot
Match: A0A7S1Z8L8_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z8L8_TRICV)

HSP 1 Score: 49.3 bits (116), Expect = 1.140e-5
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 RLHFLACTSCGATRSVAPIRSGFSAVRRGERRKAR 105
            RLHF +C  CG++RSVAPIRSG+ A  R +RR AR
Sbjct:  267 RLHFCSCRDCGSSRSVAPIRSGYHATSRADRRAAR 301
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BLAST of mRNA_M-pyrifera_M_contig89823.20823.1 vs. uniprot
Match: J9IUI5_9SPIT (eIF2B_5 domain-containing protein n=2 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IUI5_9SPIT)

HSP 1 Score: 48.9 bits (115), Expect = 1.320e-5
Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 RLHFLACTSCGATRSVAPIRSGFSAVRRGERRKAR 105
            RL+ L C +CG+TRSVA I++G+ AVR+GER+KAR
Sbjct:  197 RLYQLECKNCGSTRSVAAIKAGYQAVRKGERKKAR 231
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BLAST of mRNA_M-pyrifera_M_contig89823.20823.1 vs. uniprot
Match: A0A078AIP2_STYLE (Translation initiation factor if-2 betam beta subunit n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AIP2_STYLE)

HSP 1 Score: 48.5 bits (114), Expect = 1.770e-5
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 RLHFLACTSCGATRSVAPIRSGFSAVRRGERRKAR 105
            RL+ L C  CG+TRSVA I++GF AV++GER+KAR
Sbjct:  191 RLYMLECKLCGSTRSVAAIKAGFHAVKKGERKKAR 225
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BLAST of mRNA_M-pyrifera_M_contig89823.20823.1 vs. uniprot
Match: A0A7S4I152_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I152_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 2.240e-5
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 RLHFLACTSCGATRSVAPIRSGFSAVRRGERRKAR 105
            RL+FL C  CG++RSVAPIRSG+ A  R +RR AR
Sbjct:  137 RLYFLHCRDCGSSRSVAPIRSGYHATSRADRRAAR 171
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89823.20823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A7S1G4L1_9STRA1.050e-665.71Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1G6Z3_9STRA1.480e-665.71Hypothetical protein n=3 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2J844_9EUKA1.830e-660.00Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A448ZRK0_9STRA6.970e-665.71eIF2B_5 domain-containing protein n=2 Tax=Pseudo-n... [more]
A0A1E7FM54_9STRA7.140e-665.71eIF-5_eIF-2B-domain-containing protein n=1 Tax=Fra... [more]
A0A7S4AIX6_9STRA8.530e-665.71Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A7S1Z8L8_TRICV1.140e-562.86Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
J9IUI5_9SPIT1.320e-562.86eIF2B_5 domain-containing protein n=2 Tax=Oxytrich... [more]
A0A078AIP2_STYLE1.770e-562.86Translation initiation factor if-2 betam beta subu... [more]
A0A7S4I152_9STRA2.240e-562.86Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89823contigM-pyrifera_M_contig89823:684..800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptioneukaryotic initiation factor 2 beta subunit
Ec32 orthologEc-11_003650.1
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816809.1896048-CDS-M-pyrifera_M_contig89823:683..8001622816809.1896048-CDS-M-pyrifera_M_contig89823:683..800Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89823 684..800 -
1692278191.254042-CDS-M-pyrifera_M_contig89823:683..8001692278191.254042-CDS-M-pyrifera_M_contig89823:683..800Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89823 684..800 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89823.20823.1prot_M-pyrifera_M_contig89823.20823.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89823 684..800 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89823.20823.1

>prot_M-pyrifera_M_contig89823.20823.1 ID=prot_M-pyrifera_M_contig89823.20823.1|Name=mRNA_M-pyrifera_M_contig89823.20823.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
RLHFLACTSCGATRSVAPIRSGFSAVRRGERRKARTTT*
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mRNA from alignment at M-pyrifera_M_contig89823:684..800-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89823.20823.1 ID=mRNA_M-pyrifera_M_contig89823.20823.1|Name=mRNA_M-pyrifera_M_contig89823.20823.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=117bp|location=Sequence derived from alignment at M-pyrifera_M_contig89823:684..800- (Macrocystis pyrifera P11B4 male)
AGACTGCACTTCCTCGCATGCACCAGCTGCGGCGCCACCAGGAGCGTCGC
GCCCATCCGATCCGGCTTCTCAGCCGTACGAAGGGGAGAGAGGAGAAAGG
CCAGGACAACCACCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89823:684..800-

>mRNA_M-pyrifera_M_contig89823.20823.1 ID=mRNA_M-pyrifera_M_contig89823.20823.1|Name=mRNA_M-pyrifera_M_contig89823.20823.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig89823:684..800- (Macrocystis pyrifera P11B4 male)
AGACTGCACTTCCTCGCATGCACCAGCTGCGGCGCCACCAGGAGCGTCGC
GCCCATCCGATCCGGCTTCTCAGCCGTACGAAGGGGAGAGAGGAGAAAGG
CCAGGACAACCACCTGAAGACTGCACTTCCTCGCATGCACCAGCTGCGGC
GCCACCAGGAGCGTCGCGCCCATCCGATCCGGCTTCTCAGCCGTACGAAG
GGGAGAGAGGAGAAAGGCCAGGACAACCACCTGA
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