mRNA_M-pyrifera_M_contig89776.20809.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89776.20809.1
Unique NamemRNA_M-pyrifera_M_contig89776.20809.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89776.20809.1 vs. uniprot
Match: X1PXW8_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1PXW8_9ZZZZ)

HSP 1 Score: 99.0 bits (245), Expect = 1.890e-21
Identity = 54/140 (38.57%), Postives = 79/140 (56.43%), Query Frame = 1 
Query:    1 SSEQGIKVLLGEATTIRRLQRSLASFLDRCRQASPEKFLKQVSLLLEKRATQKGLASDILPDGVTIENFKAFLDAANGVADLAANDGDPCPFCRRPLDGDALELVRRYHDFLISTLQTEIKKLAQDVEDSSTKLEGVRDF 420
            SSEQG+K+L  E TT+   + ++  F +   + +P    + ++ L EK+  QK LA +ILP  V    FK FL AA    D   + GDPCPFCR  ++   + LV++YH FL + LQ EI  +   + +S   L+GV DF
Sbjct:  119 SSEQGLKLLRSEVTTLNAWKNAITEFCELAGKVAPSVPKQLLAKLTEKKQIQKELAKEILPGNVEFGEFKTFLAAAQPFFDYEPSLGDPCPFCRTSMELPVINLVKKYHKFLTNRLQDEIITIESGINESLKTLQGVIDF 258
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BLAST of mRNA_M-pyrifera_M_contig89776.20809.1 vs. uniprot
Match: A0A2E5JHP3_9PROT (AAA_13 domain-containing protein n=1 Tax=Halobacteriovorax sp. TaxID=2020862 RepID=A0A2E5JHP3_9PROT)

HSP 1 Score: 64.7 bits (156), Expect = 2.010e-8
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:  133 LLEKRATQKGLASDILPDGVTIENFKAFLDAANGVADLAANDGDPCPFCRRPLDGDALELVRRYHDFLISTLQTEI 360
            LL+ R  QKG    ++PD V +  FK FL  +  V D    +   C FC+RPL+GD+LE++++Y+ FL S L+ +I
Sbjct:  342 LLKLREEQKGDIQFLVPDKVNLGKFKEFLKQSKDVLDYENTEFKECLFCKRPLEGDSLEIIQKYYKFLKSDLEHKI 417
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89776.20809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
X1PXW8_9ZZZZ1.890e-2138.57Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A2E5JHP3_9PROT2.010e-840.79AAA_13 domain-containing protein n=1 Tax=Halobacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89776contigM-pyrifera_M_contig89776:115..801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue5.4e-07
Seed eggNOG ortholog205922.Pfl01_2428
Preferred namesbcC
KEGG koko:K03546
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006259,GO:0006260,GO:0006310,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0034645,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901576
EggNOG free text desc.ATPase involved in DNA repair
EggNOG OGsCOG0419@1,COG0419@2
COG Functional cat.L
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons1
Model size687
Cds size687
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.581907-CDS-M-pyrifera_M_contig89776:114..8011622816808.581907-CDS-M-pyrifera_M_contig89776:114..801Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89776 115..801 -
1692278190.9053361-CDS-M-pyrifera_M_contig89776:114..8011692278190.9053361-CDS-M-pyrifera_M_contig89776:114..801Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89776 115..801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89776.20809.1prot_M-pyrifera_M_contig89776.20809.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89776 115..801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89776.20809.1

>prot_M-pyrifera_M_contig89776.20809.1 ID=prot_M-pyrifera_M_contig89776.20809.1|Name=mRNA_M-pyrifera_M_contig89776.20809.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=229bp
SSEQGIKVLLGEATTIRRLQRSLASFLDRCRQASPEKFLKQVSLLLEKRA
TQKGLASDILPDGVTIENFKAFLDAANGVADLAANDGDPCPFCRRPLDGD
ALELVRRYHDFLISTLQTEIKKLAQDVEDSSTKLEGVRDFKIDIDDDTSS
FLTADERQSLLNAIDGVKKSIPNPLSRNEEHSIGSFGSLEAIEEIEKRLV
TEADKRDEAIQSAKSGSAERQKEIDRLTA
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mRNA from alignment at M-pyrifera_M_contig89776:115..801-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89776.20809.1 ID=mRNA_M-pyrifera_M_contig89776.20809.1|Name=mRNA_M-pyrifera_M_contig89776.20809.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=687bp|location=Sequence derived from alignment at M-pyrifera_M_contig89776:115..801- (Macrocystis pyrifera P11B4 male)
AGCAGCGAACAGGGCATCAAAGTGCTTCTCGGAGAAGCAACGACGATTCG
GCGACTTCAAAGATCACTCGCAAGTTTTCTCGACCGATGCAGACAAGCAT
CACCTGAAAAATTCTTAAAGCAAGTGTCCTTGCTTCTGGAGAAACGTGCG
ACCCAGAAGGGACTGGCTTCAGATATCCTGCCAGATGGAGTCACTATCGA
AAATTTCAAAGCGTTTCTCGATGCCGCTAATGGTGTCGCTGATCTAGCTG
CGAATGATGGTGATCCGTGCCCGTTTTGTCGCCGTCCATTGGATGGTGAT
GCACTTGAATTGGTACGCAGGTATCACGATTTTCTTATCAGCACACTTCA
GACGGAGATCAAGAAACTCGCTCAGGACGTTGAGGATAGTTCAACAAAGC
TAGAAGGAGTCCGAGACTTTAAAATCGACATAGACGATGACACTTCGTCC
TTTCTGACAGCAGATGAACGACAGTCTCTCCTCAATGCCATCGATGGTGT
CAAGAAGTCGATCCCAAATCCGCTTTCTCGCAACGAAGAGCATTCAATCG
GCAGTTTCGGGAGCCTTGAAGCAATCGAAGAGATAGAGAAACGCTTGGTA
ACGGAAGCCGACAAGCGTGATGAAGCCATACAATCTGCCAAGTCAGGATC
GGCTGAGAGACAAAAGGAAATTGACCGATTGACGGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89776:115..801-

>mRNA_M-pyrifera_M_contig89776.20809.1 ID=mRNA_M-pyrifera_M_contig89776.20809.1|Name=mRNA_M-pyrifera_M_contig89776.20809.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1374bp|location=Sequence derived from alignment at M-pyrifera_M_contig89776:115..801- (Macrocystis pyrifera P11B4 male)
AGCAGCGAACAGGGCATCAAAGTGCTTCTCGGAGAAGCAACGACGATTCG
GCGACTTCAAAGATCACTCGCAAGTTTTCTCGACCGATGCAGACAAGCAT
CACCTGAAAAATTCTTAAAGCAAGTGTCCTTGCTTCTGGAGAAACGTGCG
ACCCAGAAGGGACTGGCTTCAGATATCCTGCCAGATGGAGTCACTATCGA
AAATTTCAAAGCGTTTCTCGATGCCGCTAATGGTGTCGCTGATCTAGCTG
CGAATGATGGTGATCCGTGCCCGTTTTGTCGCCGTCCATTGGATGGTGAT
GCACTTGAATTGGTACGCAGGTATCACGATTTTCTTATCAGCACACTTCA
GACGGAGATCAAGAAACTCGCTCAGGACGTTGAGGATAGTTCAACAAAGC
TAGAAGGAGTCCGAGACTTTAAAATCGACATAGACGATGACACTTCGTCC
TTTCTGACAGCAGATGAACGACAGTCTCTCCTCAATGCCATCGATGGTGT
CAAGAAGTCGATCCCAAATCCGCTTTCTCGCAACGAAGAGCATTCAATCG
GCAGTTTCGGGAGCCTTGAAGCAATCGAAGAGATAGAGAAACGCTTGGTA
ACGGAAGCCGACAAGCGTGATGAAGCCATACAATCTGCCAAGTCAGGATC
GGCTGAGAGACAAAAGGAAATTGACCGATTGACGGCTAGCAGCGAACAGG
GCATCAAAGTGCTTCTCGGAGAAGCAACGACGATTCGGCGACTTCAAAGA
TCACTCGCAAGTTTTCTCGACCGATGCAGACAAGCATCACCTGAAAAATT
CTTAAAGCAAGTGTCCTTGCTTCTGGAGAAACGTGCGACCCAGAAGGGAC
TGGCTTCAGATATCCTGCCAGATGGAGTCACTATCGAAAATTTCAAAGCG
TTTCTCGATGCCGCTAATGGTGTCGCTGATCTAGCTGCGAATGATGGTGA
TCCGTGCCCGTTTTGTCGCCGTCCATTGGATGGTGATGCACTTGAATTGG
TACGCAGGTATCACGATTTTCTTATCAGCACACTTCAGACGGAGATCAAG
AAACTCGCTCAGGACGTTGAGGATAGTTCAACAAAGCTAGAAGGAGTCCG
AGACTTTAAAATCGACATAGACGATGACACTTCGTCCTTTCTGACAGCAG
ATGAACGACAGTCTCTCCTCAATGCCATCGATGGTGTCAAGAAGTCGATC
CCAAATCCGCTTTCTCGCAACGAAGAGCATTCAATCGGCAGTTTCGGGAG
CCTTGAAGCAATCGAAGAGATAGAGAAACGCTTGGTAACGGAAGCCGACA
AGCGTGATGAAGCCATACAATCTGCCAAGTCAGGATCGGCTGAGAGACAA
AAGGAAATTGACCGATTGACGGCT
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