mRNA_M-pyrifera_M_contig89766.20806.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89766.20806.1
Unique NamemRNA_M-pyrifera_M_contig89766.20806.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89766.20806.1 vs. uniprot
Match: A0A7W1VWH1_9BACT (IPT/TIG domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A7W1VWH1_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.600e-6
Identity = 35/115 (30.43%), Postives = 60/115 (52.17%), Query Frame = 1 
Query:    1 GQGTDLVVKVYIQGSWSNSVTYSYSPPIITRLTATEPAESGDPWTLHIVGSNFGVSNEVLVRPLVGGSPYTLLSTVSSSHTTIVVTLSEDEGEVSVQSGGQTSNSRIYSQASPII 345
            G GT   V V + G  S +++++Y+PP IT +  T    SG+   + + G++FG S  VL      G+P  + S   S    +V      +  +SV +GGQ SN ++++ +SP +
Sbjct:  411 GVGTGHTVSVSVGGQDSGALSFNYNPPFITDVFPTSAPTSGNT-LVTLTGASFGTSGTVLFN----GNPCAISSYTHSQIQFVVPPGQGMDNSISVVTGGQPSNMKLFNYSSPSV 520
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89766.20806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7W1VWH1_9BACT1.600e-630.43IPT/TIG domain-containing protein n=1 Tax=Verrucom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89766contigM-pyrifera_M_contig89766:178..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.4884322-CDS-M-pyrifera_M_contig89766:177..5221622816808.4884322-CDS-M-pyrifera_M_contig89766:177..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89766 178..522 +
1692278190.856121-CDS-M-pyrifera_M_contig89766:177..5221692278190.856121-CDS-M-pyrifera_M_contig89766:177..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89766 178..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89766.20806.1prot_M-pyrifera_M_contig89766.20806.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89766 178..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89766.20806.1

>prot_M-pyrifera_M_contig89766.20806.1 ID=prot_M-pyrifera_M_contig89766.20806.1|Name=mRNA_M-pyrifera_M_contig89766.20806.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
GQGTDLVVKVYIQGSWSNSVTYSYSPPIITRLTATEPAESGDPWTLHIVG
SNFGVSNEVLVRPLVGGSPYTLLSTVSSSHTTIVVTLSEDEGEVSVQSGG
QTSNSRIYSQASPII
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mRNA from alignment at M-pyrifera_M_contig89766:178..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89766.20806.1 ID=mRNA_M-pyrifera_M_contig89766.20806.1|Name=mRNA_M-pyrifera_M_contig89766.20806.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig89766:178..522+ (Macrocystis pyrifera P11B4 male)
GGGCAAGGTACGGATTTAGTCGTCAAAGTGTACATCCAAGGATCGTGGTC
AAACTCTGTCACATACTCCTACTCTCCCCCAATCATCACTCGACTGACAG
CAACGGAACCTGCAGAATCAGGCGACCCTTGGACGTTGCACATTGTGGGC
AGCAACTTTGGTGTCTCCAACGAAGTGTTGGTACGTCCACTTGTAGGTGG
TTCTCCCTACACTCTCCTATCCACAGTTTCTTCTTCTCACACTACCATTG
TTGTGACGTTGAGTGAAGATGAAGGTGAAGTGAGTGTACAAAGTGGAGGA
CAAACTTCCAACTCTCGAATCTACTCCCAAGCGTCTCCTATCATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89766:178..522+

>mRNA_M-pyrifera_M_contig89766.20806.1 ID=mRNA_M-pyrifera_M_contig89766.20806.1|Name=mRNA_M-pyrifera_M_contig89766.20806.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig89766:178..522+ (Macrocystis pyrifera P11B4 male)
GGGCAAGGTACGGATTTAGTCGTCAAAGTGTACATCCAAGGATCGTGGTC
AAACTCTGTCACATACTCCTACTCTCCCCCAATCATCACTCGACTGACAG
CAACGGAACCTGCAGAATCAGGCGACCCTTGGACGTTGCACATTGTGGGC
AGCAACTTTGGTGTCTCCAACGAAGTGTTGGTACGTCCACTTGTAGGTGG
TTCTCCCTACACTCTCCTATCCACAGTTTCTTCTTCTCACACTACCATTG
TTGTGACGTTGAGTGAAGATGAAGGTGAAGTGAGTGTACAAAGTGGAGGA
CAAACTTCCAACTCTCGAATCTACTCCCAAGCGTCTCCTATCATTGGGCA
AGGTACGGATTTAGTCGTCAAAGTGTACATCCAAGGATCGTGGTCAAACT
CTGTCACATACTCCTACTCTCCCCCAATCATCACTCGACTGACAGCAACG
GAACCTGCAGAATCAGGCGACCCTTGGACGTTGCACATTGTGGGCAGCAA
CTTTGGTGTCTCCAACGAAGTGTTGGTACGTCCACTTGTAGGTGGTTCTC
CCTACACTCTCCTATCCACAGTTTCTTCTTCTCACACTACCATTGTTGTG
ACGTTGAGTGAAGATGAAGGTGAAGTGAGTGTACAAAGTGGAGGACAAAC
TTCCAACTCTCGAATCTACTCCCAAGCGTCTCCTATCATT
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