mRNA_M-pyrifera_M_contig89708.20798.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89708.20798.1
Unique NamemRNA_M-pyrifera_M_contig89708.20798.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89708.20798.1 vs. uniprot
Match: A0A5J6SDD9_POTMO (Galactosylceramidase 2 isoform 2 n=1 Tax=Potamotrygon motoro TaxID=86373 RepID=A0A5J6SDD9_POTMO)

HSP 1 Score: 102 bits (253), Expect = 1.500e-25
Identity = 52/84 (61.90%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   88 LGPRFDGIGALSGGGATSRLLQDYEN--NTLFYDLLFKPFYGASLHLLKTEIGSATFTGCGTEPSHAYQVDDLSYSRGYEWELM 333
            LGP FDGIG LSGGGATSRLL +Y+    +   D LFKP +GASLH+LK EIG    T  GTEPSH +  DD +Y RGYEW LM
Sbjct:   38 LGPEFDGIGGLSGGGATSRLLVNYQEPYRSQILDYLFKPNFGASLHILKVEIGGDAQTTDGTEPSHMHYEDDANYFRGYEWWLM 121
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BLAST of mRNA_M-pyrifera_M_contig89708.20798.1 vs. uniprot
Match: A0A7S2NCB8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2NCB8_9DINO)

HSP 1 Score: 97.4 bits (241), Expect = 5.060e-24
Identity = 51/91 (56.04%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:   67 LPISGLRLGPRFDGIGALSGGGATSRLLQDYEN--NTLFYDLLFKPFYGASLHLLKTEIGSATFTGCGTEPSHAYQVDDLSYSRGYEWELM 333
            L I   R+G  FDGIG LSGGGATSRLL DY     +   D +FKP YGASLH+LK EIG  + +  G E SH +  DDL Y RGYEW L+
Sbjct:   19 LTIDTRRVGQTFDGIGGLSGGGATSRLLVDYPEPQRSQILDYMFKPNYGASLHILKVEIGGDSQSTDGVESSHMHSADDLDYHRGYEWWLL 109
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BLAST of mRNA_M-pyrifera_M_contig89708.20798.1 vs. uniprot
Match: A0A1A8GPQ5_9TELE (Galactosylceramidase (Fragment) n=1 Tax=Nothobranchius korthausae TaxID=1143690 RepID=A0A1A8GPQ5_9TELE)

HSP 1 Score: 96.3 bits (238), Expect = 2.950e-23
Identity = 51/84 (60.71%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   88 LGPRFDGIGALSGGGATSRLLQDYEN--NTLFYDLLFKPFYGASLHLLKTEIGSATFTGCGTEPSHAYQVDDLSYSRGYEWELM 333
            LG  FDGIG LSGGGATSRLL +YE    +   D LFKP +GASLH+LK EIG    T  GTEPSH +  +D +Y RGYEW LM
Sbjct:   35 LGRVFDGIGGLSGGGATSRLLVNYEEPYRSQILDFLFKPNFGASLHILKVEIGGDAQTTDGTEPSHMHYENDENYFRGYEWWLM 118
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BLAST of mRNA_M-pyrifera_M_contig89708.20798.1 vs. uniprot
Match: A0A672T3L5_SINGR (Galactocerebrosidase n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672T3L5_SINGR)

HSP 1 Score: 97.4 bits (241), Expect = 5.860e-23
Identity = 50/84 (59.52%), Postives = 58/84 (69.05%), Query Frame = 1 
Query:   88 LGPRFDGIGALSGGGATSRLLQDYEN--NTLFYDLLFKPFYGASLHLLKTEIGSATFTGCGTEPSHAYQVDDLSYSRGYEWELM 333
            LG  FDGIG LSGGGATSRLL +YE    +   D LFKP +GASLH+LK EIG    T  GTEPSH +  D+ ++ RGYEW LM
Sbjct:   49 LGREFDGIGGLSGGGATSRLLVNYEEPYRSQILDFLFKPNFGASLHILKVEIGGDAQTTDGTEPSHMHSKDEANFFRGYEWWLM 132
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BLAST of mRNA_M-pyrifera_M_contig89708.20798.1 vs. uniprot
Match: A0A5J6SDX6_POTMO (Galactocerebrosidase n=2 Tax=Potamotrygon motoro TaxID=86373 RepID=A0A5J6SDX6_POTMO)

HSP 1 Score: 102 bits (253), Expect = 6.190e-23
Identity = 52/84 (61.90%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   88 LGPRFDGIGALSGGGATSRLLQDYEN--NTLFYDLLFKPFYGASLHLLKTEIGSATFTGCGTEPSHAYQVDDLSYSRGYEWELM 333
            LGP FDGIG LSGGGATSRLL +Y+    +   D LFKP +GASLH+LK EIG    T  GTEPSH +  DD +Y RGYEW LM
Sbjct:   38 LGPEFDGIGGLSGGGATSRLLVNYQEPYRSQILDYLFKPNFGASLHILKVEIGGDAQTTDGTEPSHMHYEDDANYFRGYEWWLM 121
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BLAST of mRNA_M-pyrifera_M_contig89708.20798.1 vs. uniprot
Match: UPI001BB25076 (galactocerebrosidase-like isoform X2 n=2 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB25076)

HSP 1 Score: 101 bits (252), Expect = 8.430e-23
Identity = 58/111 (52.25%), Postives = 72/111 (64.86%), Query Frame = 1 
Query:   16 FTVLSLSVAVGAIPTG---MLPISGLRLGPRFDGIGALSGGGATSRLLQDYEN--NTLFYDLLFKPFYGASLHLLKTEIGSATFTGCGTEPSHAYQVDDLSYSRGYEWELM 333
            F +LSL++    + +G   ++  SG  LGPRFDGIG LSGGGATSRLL  Y +   +   D LF P +GASLH+LK EIG    +  GTEPSH +  DD +Y RGYEW LM
Sbjct:    6 FAILSLTIVFACLASGASYLVDDSG-GLGPRFDGIGGLSGGGATSRLLVSYPDPERSQILDYLFSPNFGASLHMLKVEIGGDAQSTEGTEPSHMHSPDDENYQRGYEWWLM 115
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BLAST of mRNA_M-pyrifera_M_contig89708.20798.1 vs. uniprot
Match: UPI00140256E2 (galactocerebrosidase isoform X2 n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI00140256E2)

HSP 1 Score: 101 bits (251), Expect = 1.150e-22
Identity = 52/84 (61.90%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   88 LGPRFDGIGALSGGGATSRLLQDYEN--NTLFYDLLFKPFYGASLHLLKTEIGSATFTGCGTEPSHAYQVDDLSYSRGYEWELM 333
            LGP FDGIG LSGGGATSRLL +Y+    +   D LFKP +GASLH+LK EIG    T  GTEPSH +  DD +Y RGYEW LM
Sbjct:   28 LGPEFDGIGGLSGGGATSRLLVNYQEPYRSQILDYLFKPNFGASLHILKVEIGGDAQTTDGTEPSHMHYEDDENYFRGYEWWLM 111
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BLAST of mRNA_M-pyrifera_M_contig89708.20798.1 vs. uniprot
Match: UPI001CB866F6 (galactocerebrosidase isoform X1 n=4 Tax=Chiloscyllium plagiosum TaxID=36176 RepID=UPI001CB866F6)

HSP 1 Score: 101 bits (251), Expect = 1.160e-22
Identity = 52/84 (61.90%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:   88 LGPRFDGIGALSGGGATSRLLQDYEN--NTLFYDLLFKPFYGASLHLLKTEIGSATFTGCGTEPSHAYQVDDLSYSRGYEWELM 333
            LGP+FDGIG LSGGGATSRLL +Y     +   D LFKP +GASLH+LK EIG    T  GTEPSH +  +D +YSRGYEW LM
Sbjct:   49 LGPQFDGIGGLSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDAQTTDGTEPSHMHDENDENYSRGYEWWLM 132
[Close]
BLAST of mRNA_M-pyrifera_M_contig89708.20798.1 vs. uniprot
Match: A0A8C4KDJ0_DRONO (Galactocerebrosidase n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=A0A8C4KDJ0_DRONO)

HSP 1 Score: 96.7 bits (239), Expect = 1.890e-22
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:   88 LGPRFDGIGALSGGGATSRLLQDYEN--NTLFYDLLFKPFYGASLHLLKTEIGSATFTGCGTEPSHAYQVDDLSYSRGYEWELM 333
            LG RFDGIGA+SGGGATSRLL +Y+    +   D LFKP +GA+LH+LK EIG    +  GTEPSH +  DD +Y RGYEW LM
Sbjct:   49 LGRRFDGIGAVSGGGATSRLLVNYQEPYRSQILDYLFKPNFGAALHILKVEIGGDGQSTDGTEPSHMHYEDDENYFRGYEWWLM 132
[Close]
BLAST of mRNA_M-pyrifera_M_contig89708.20798.1 vs. uniprot
Match: A0A7M7NW26_STRPU (Galactosylceramidase n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NW26_STRPU)

HSP 1 Score: 100 bits (249), Expect = 2.150e-22
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:   88 LGPRFDGIGALSGGGATSRLLQDYEN--NTLFYDLLFKPFYGASLHLLKTEIGSATFTGCGTEPSHAYQVDDLSYSRGYEWELM 333
            LGPRFDGIG +SGGGATSRLL  Y +   +   D LF P +GA+LH+LK E+G    +G GTEPSH +  DD +Y RGYEW LM
Sbjct:   42 LGPRFDGIGGISGGGATSRLLVSYPDPERSQILDYLFSPNFGAALHILKVEMGGDAESGIGTEPSHMHSPDDENYQRGYEWWLM 125
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89708.20798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J6SDD9_POTMO1.500e-2561.90Galactosylceramidase 2 isoform 2 n=1 Tax=Potamotry... [more]
A0A7S2NCB8_9DINO5.060e-2456.04Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A1A8GPQ5_9TELE2.950e-2360.71Galactosylceramidase (Fragment) n=1 Tax=Nothobranc... [more]
A0A672T3L5_SINGR5.860e-2359.52Galactocerebrosidase n=1 Tax=Sinocyclocheilus grah... [more]
A0A5J6SDX6_POTMO6.190e-2361.90Galactocerebrosidase n=2 Tax=Potamotrygon motoro T... [more]
UPI001BB250768.430e-2352.25galactocerebrosidase-like isoform X2 n=2 Tax=Lytec... [more]
UPI00140256E21.150e-2261.90galactocerebrosidase isoform X2 n=2 Tax=Amblyraja ... [more]
UPI001CB866F61.160e-2261.90galactocerebrosidase isoform X1 n=4 Tax=Chiloscyll... [more]
A0A8C4KDJ0_DRONO1.890e-2259.52Galactocerebrosidase n=1 Tax=Dromaius novaeholland... [more]
A0A7M7NW26_STRPU2.150e-2258.33Galactosylceramidase n=2 Tax=Strongylocentrotus pu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89708contigM-pyrifera_M_contig89708:176..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score102.4
Seed ortholog evalue1.3e-19
Seed eggNOG ortholog7668.SPU_000872-tr
Preferred nameGALC
KEGG rclassRC00059,RC00451
KEGG koko:K01202
KEGG ReactionR03617
KEGG Pathwayko00600,ko01100,ko04142,map00600,map01100,map04142
Hectar predicted targeting categorysignal peptide
GOsGO:0000323,GO:0003674,GO:0003824,GO:0004336,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0005775,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006677,GO:0006681,GO:0006683,GO:0006687,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016042,GO:0016787,GO:0016798,GO:0019374,GO:0019376,GO:0019377,GO:0030149,GO:0031974,GO:0034641,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046466,GO:0046477,GO:0046479,GO:0046514,GO:0070013,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509
EggNOG free text desc.galactosylceramide catabolic process
EggNOG OGs2C8FE@1,2QQ1Q@2759,39RP4@33154,3BETS@33208,3D0DQ@33213
EC3.2.1.46
COG Functional cat.S
CAZyGH59
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816808.2237253-CDS-M-pyrifera_M_contig89708:175..5081622816808.2237253-CDS-M-pyrifera_M_contig89708:175..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89708 176..508 -
1692278190.7347035-CDS-M-pyrifera_M_contig89708:175..5081692278190.7347035-CDS-M-pyrifera_M_contig89708:175..508Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89708 176..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89708.20798.1prot_M-pyrifera_M_contig89708.20798.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89708 176..508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89708.20798.1

>prot_M-pyrifera_M_contig89708.20798.1 ID=prot_M-pyrifera_M_contig89708.20798.1|Name=mRNA_M-pyrifera_M_contig89708.20798.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
VLQVIFTVLSLSVAVGAIPTGMLPISGLRLGPRFDGIGALSGGGATSRLL
QDYENNTLFYDLLFKPFYGASLHLLKTEIGSATFTGCGTEPSHAYQVDDL
SYSRGYEWELM
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mRNA from alignment at M-pyrifera_M_contig89708:176..508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89708.20798.1 ID=mRNA_M-pyrifera_M_contig89708.20798.1|Name=mRNA_M-pyrifera_M_contig89708.20798.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig89708:176..508- (Macrocystis pyrifera P11B4 male)
GTTTTGCAGGTAATTTTCACCGTTCTGAGTCTCTCTGTTGCTGTGGGTGC
GATTCCTACGGGGATGTTGCCTATCTCAGGGTTGAGGTTGGGTCCAAGGT
TTGATGGAATTGGCGCATTGAGTGGAGGAGGAGCGACGAGTAGGTTGTTG
CAAGATTACGAGAACAATACGTTATTTTATGACCTTTTATTCAAACCATT
TTATGGTGCATCATTGCATCTGTTGAAAACAGAGATTGGGTCGGCTACAT
TCACTGGTTGTGGGACAGAACCAAGCCATGCGTATCAAGTTGATGATTTA
AGCTATTCTAGGGGGTATGAATGGGAGCTGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89708:176..508-

>mRNA_M-pyrifera_M_contig89708.20798.1 ID=mRNA_M-pyrifera_M_contig89708.20798.1|Name=mRNA_M-pyrifera_M_contig89708.20798.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig89708:176..508- (Macrocystis pyrifera P11B4 male)
GTTTTGCAGGTAATTTTCACCGTTCTGAGTCTCTCTGTTGCTGTGGGTGC
GATTCCTACGGGGATGTTGCCTATCTCAGGGTTGAGGTTGGGTCCAAGGT
TTGATGGAATTGGCGCATTGAGTGGAGGAGGAGCGACGAGTAGGTTGTTG
CAAGATTACGAGAACAATACGTTATTTTATGACCTTTTATTCAAACCATT
TTATGGTGCATCATTGCATCTGTTGAAAACAGAGATTGGGTCGGCTACAT
TCACTGGTTGTGGGACAGAACCAAGCCATGCGTATCAAGTTGATGATTTA
AGCTATTCTAGGGGGTATGAATGGGAGCTGATGGTTTTGCAGGTAATTTT
CACCGTTCTGAGTCTCTCTGTTGCTGTGGGTGCGATTCCTACGGGGATGT
TGCCTATCTCAGGGTTGAGGTTGGGTCCAAGGTTTGATGGAATTGGCGCA
TTGAGTGGAGGAGGAGCGACGAGTAGGTTGTTGCAAGATTACGAGAACAA
TACGTTATTTTATGACCTTTTATTCAAACCATTTTATGGTGCATCATTGC
ATCTGTTGAAAACAGAGATTGGGTCGGCTACATTCACTGGTTGTGGGACA
GAACCAAGCCATGCGTATCAAGTTGATGATTTAAGCTATTCTAGGGGGTA
TGAATGGGAGCTGATG
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