mRNA_M-pyrifera_M_contig89634.20785.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89634.20785.1
Unique NamemRNA_M-pyrifera_M_contig89634.20785.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89634.20785.1 vs. uniprot
Match: A0A7S3BZG7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BZG7_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 7.860e-24
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   13 VDPTP---SIQFALGPAGSGASKHYHIHAVNALAYGKKLWAITPPSHTAFSRMTAMSYFTDYLPKEMENTQFCIQNPGDLVFVPQLWGHAVLNLKTSLALSVEF 315
            V+P P   S QF LGP GSGA  HYH  A N LAYG+K W +TPP +  FS   +  +F     +       C+Q  GDL+ VP  WGHA LN++TS+  + EF
Sbjct:   49 VEPKPPGYSPQFFLGPPGSGAPWHYHFAAANVLAYGRKRWFLTPPGNAHFSTTPSAVWFEKEYAQSSPKPMECVQEAGDLLLVPNFWGHATLNIETSIGTAFEF 152          
BLAST of mRNA_M-pyrifera_M_contig89634.20785.1 vs. uniprot
Match: A0A7S3AGP9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AGP9_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 1.240e-22
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   34 QFALGPAGSGASKHYHIHAVNALAYGKKLWAITPPSHTAFSRMTAMSYFTDYLPKEMENTQFCIQNPGDLVFVPQLWGHAVLNLKTSLALSVEF 315
            QF LGP GSGA  HYH  A+N LAYG+K W +TPP  + +S     ++F     +       CIQ  GDL+ VP +WGHA +N++TS+ ++ EF
Sbjct:   45 QFYLGPPGSGAPWHYHTTAINTLAYGRKRWFLTPPELSQYSTQHPAAWFEQEYAQADAKPLECIQEAGDLLVVPSMWGHATINIETSIGMAFEF 138          
BLAST of mRNA_M-pyrifera_M_contig89634.20785.1 vs. uniprot
Match: A0A7R9XVZ4_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XVZ4_9VIRI)

HSP 1 Score: 94.0 bits (232), Expect = 3.580e-20
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   28 SIQFALGPAGSGASKHYHIHAVNALAYGKKLWAITPPSHTAFSRMTAMSYFTDYLPKEME--------NTQFCIQNPGDLVFVPQLWGHAVLNLKTSLALSVE 312
            S+Q++LG AGSGA  H H  A+  LAYG+KLW +TPP+      +T   +      +E+         +T FC+Q  GD + VP+LWGHAVLNL+ S+ LSVE
Sbjct:  296 SLQWSLGGAGSGAQVHTHGAAMATLAYGRKLWLLTPPARAQVGSLTGAQHVLQAASQELAARARGERPSTLFCVQEAGDSLLVPELWGHAVLNLRASVGLSVE 398          
BLAST of mRNA_M-pyrifera_M_contig89634.20785.1 vs. uniprot
Match: A0A7S2FUF2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FUF2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 9.880e-20
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 1
Query:   13 VDPTPSIQFALGPAGSGASKHYHIHAVNALAYGKKLWAITPPSHTAFSRM----TAMSYFTDYLPKEMEN-TQFCIQNPGDLVFVPQLWGHAVLNLKTSLALSVE 312
            V P  + Q  LGP G+GA  HYH+ AVN L  G+K WA+ PPS   +SR       +S   + +  E  +  + C Q  GDLVFVP+ WGH VLNL+ SLA++VE
Sbjct:    2 VKPGLTAQLGLGPKGTGAPFHYHMPAVNLLVDGQKRWALIPPSVAWYSRTHPNNNRVSATAEKMVAESGSLVRRCTQEKGDLVFVPEFWGHEVLNLEDSLAIAVE 106          
BLAST of mRNA_M-pyrifera_M_contig89634.20785.1 vs. uniprot
Match: A0A7S3EW70_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EW70_9EUKA)

HSP 1 Score: 87.4 bits (215), Expect = 2.260e-19
Identity = 45/98 (45.92%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   34 QFALGPAGSGASKHYHIHAVNALAYGKKLWAITPPSHTAFSRMTAMSYFTDYLPK-EMENTQ---FCIQNPGDLVFVPQLWGHAVLNLKTSLALSVEF 315
            Q  LGP GSGA  H+H  A N L YG+K W +TPP   AFS   A   F D +P  EM  T+    C+Q  GDL+ VP  WGH   N +TS+ ++ EF
Sbjct:   69 QLYLGPPGSGAPWHFHHPAWNLLGYGEKAWLLTPPRQAAFSTKHASKCFVDDVPALEMNGTEPVWRCVQRAGDLLVVPDGWGHTTYNTRTSIGIAREF 166          
BLAST of mRNA_M-pyrifera_M_contig89634.20785.1 vs. uniprot
Match: A0A7S3F3Q5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F3Q5_9EUKA)

HSP 1 Score: 89.7 bits (221), Expect = 3.610e-19
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   25 PSIQFALGPAGSGASKHYHIHAVNALAYGKKLWAITPPSHTAFSRMTAMSYF-TDYLPKEMEN-----TQFCIQNPGDLVFVPQLWGHAVLNLKTSLALSVE 312
            P I+F  GP GSGA  HYH  A NALAYG+K W + PPS   FS   ++ ++ T++   E ++        C Q  GD++FVP  W HA +NL+TS+ L+ E
Sbjct:  211 PRIEFYFGPPGSGAPWHYHDPAFNALAYGRKRWFVMPPSRAVFSNKPSVEWYRTEFEQLEPDSGARRDVLECTQEAGDILFVPDRWSHATINLETSIGLAYE 312          
BLAST of mRNA_M-pyrifera_M_contig89634.20785.1 vs. uniprot
Match: A0A0M0JKS5_9EUKA (Sugar o-methyltransferase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JKS5_9EUKA)

HSP 1 Score: 90.1 bits (222), Expect = 9.580e-19
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   31 IQFALGPAGSGASKHYHIHAVNALAYGKKLWAITPPSHTAFSRMTAMSYFTDYLPK-EMENTQF--CIQNPGDLVFVPQLWGHAVLNLKTSLALSVEF 315
            +QF LGPA SGA  H+H  A N L +G+K W +TPP H+ FS + A  + +  LP+    N     C Q+ GD++ +P LWGH  +N++TS+ ++ EF
Sbjct: 1199 VQFFLGPANSGAPMHFHGAAYNLLVHGRKRWLLTPPGHSTFSMLPARKWLSTRLPQLRARNASVFECEQHAGDMLVLPDLWGHLTINMETSVGVAQEF 1296          
BLAST of mRNA_M-pyrifera_M_contig89634.20785.1 vs. uniprot
Match: A0A7S2WWD6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWD6_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.330e-18
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = 1
Query:   16 DPTPSIQFALGPAGSGASKHYHIHAVNALAYGKKLWAITPPSHTAFSRMTAMSYFTD---------YLPKEMENTQFCIQNPGDLVFVPQLWGHAVLNLKTSLALSVE 312
            +P  ++Q+ALG AGSGA  H+H  A N+L YG+K W I PPS     +   + +  +         YLP E      C Q PGD++ VP+LWGHAVLN++ S+A++ E
Sbjct:  264 EPFVNLQWALGVAGSGAPVHFHNTAWNSLFYGRKHWYIYPPSRNLMGKKQTLLWVEEDLEDLKAQGYLPYE------CTQEPGDVLIVPELWGHAVLNVRDSVAVATE 365          
BLAST of mRNA_M-pyrifera_M_contig89634.20785.1 vs. uniprot
Match: A0A7S3GYD9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYD9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.860e-17
Identity = 39/99 (39.39%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   28 SIQFALGPAGSGASKHYHIHAVNALAYGKKLWAITPPSHTAFSRMTAMSYF----TDYLPKEMENTQFCIQNPGDLVFVPQLWGHAVLNLKTSLALSVE 312
            + Q+ALG  G+GA  HYH  A NAL YG KLW I PP +   S    + Y+    T ++ + ++    C+Q  GD++ +P+ WGH VLN++ S+A++ E
Sbjct:   85 NAQWALGGEGTGAPVHYHNSAWNALIYGAKLWVIYPPHNMIMSNKQMLDYYETDMTAFIERGVKPVT-CVQTAGDVLLIPESWGHGVLNIQESVAMATE 182          
BLAST of mRNA_M-pyrifera_M_contig89634.20785.1 vs. uniprot
Match: F2UKE5_SALR5 (JmjC domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UKE5_SALR5)

HSP 1 Score: 85.1 bits (209), Expect = 5.310e-17
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:   22 TPSIQFALGPAGSGASKHYHIHAVNALAYGKKLWAITPPSHTAFSRMTAMSYFTDYLP--KEMENTQFCIQNPGDLVFVPQLWGHAVLNLKTSLALSVEF 315
            T + QF LGPAGSGA  H H  + NAL YG+K W + PP    +S+     +  + LP  +       CIQ  GD+VFVP++W HAVLN   S+  + EF
Sbjct:  689 TRTKQFYLGPAGSGAPMHVHSGSWNALVYGRKRWFLLPPPLAIYSKQHPHDFIDEQLPALRARGAVLECIQESGDVVFVPEMWAHAVLNEAESIGFASEF 788          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89634.20785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3BZG7_9EUKA7.860e-2445.19Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S3AGP9_9EUKA1.240e-2244.68Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7R9XVZ4_9VIRI3.580e-2044.66Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S2FUF2_9STRA9.880e-2045.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3EW70_9EUKA2.260e-1945.92Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S3F3Q5_9EUKA3.610e-1943.14Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A0M0JKS5_9EUKA9.580e-1941.84Sugar o-methyltransferase n=1 Tax=Chrysochromulina... [more]
A0A7S2WWD6_9STRA7.330e-1841.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3GYD9_9STRA3.860e-1739.39Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F2UKE5_SALR55.310e-1743.00JmjC domain-containing protein n=1 Tax=Salpingoeca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89634contigM-pyrifera_M_contig89634:304..633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score85.1
Seed ortholog evalue2.2e-14
Seed eggNOG ortholog946362.XP_004990482.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cupin-like domain
EggNOG OGs39QJS@33154,KOG2130@1,KOG2130@2759
COG Functional cat.BT
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816807.5513818-CDS-M-pyrifera_M_contig89634:303..6331622816807.5513818-CDS-M-pyrifera_M_contig89634:303..633Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89634 304..633 -
1692278190.3049567-CDS-M-pyrifera_M_contig89634:303..6331692278190.3049567-CDS-M-pyrifera_M_contig89634:303..633Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89634 304..633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89634.20785.1prot_M-pyrifera_M_contig89634.20785.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89634 304..633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89634.20785.1

>prot_M-pyrifera_M_contig89634.20785.1 ID=prot_M-pyrifera_M_contig89634.20785.1|Name=mRNA_M-pyrifera_M_contig89634.20785.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
PKPLVDPTPSIQFALGPAGSGASKHYHIHAVNALAYGKKLWAITPPSHTA
FSRMTAMSYFTDYLPKEMENTQFCIQNPGDLVFVPQLWGHAVLNLKTSLA
LSVEFHAFS*
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mRNA from alignment at M-pyrifera_M_contig89634:304..633-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89634.20785.1 ID=mRNA_M-pyrifera_M_contig89634.20785.1|Name=mRNA_M-pyrifera_M_contig89634.20785.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig89634:304..633- (Macrocystis pyrifera P11B4 male)
CCAAAACCATTGGTCGATCCCACGCCTTCGATCCAGTTTGCATTAGGACC AGCAGGAAGTGGGGCATCGAAGCACTATCATATCCACGCAGTCAATGCCT TGGCATATGGAAAGAAACTCTGGGCCATAACTCCTCCGTCCCACACTGCA TTCTCCCGCATGACTGCAATGTCCTATTTCACCGACTACCTTCCCAAGGA GATGGAAAACACGCAATTCTGTATCCAAAATCCAGGTGATTTGGTCTTTG TTCCTCAATTGTGGGGTCATGCTGTCCTCAACCTCAAAACTTCCCTTGCC CTCTCTGTAGAATTCCACGCGTTTTCATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89634:304..633-

>mRNA_M-pyrifera_M_contig89634.20785.1 ID=mRNA_M-pyrifera_M_contig89634.20785.1|Name=mRNA_M-pyrifera_M_contig89634.20785.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig89634:304..633- (Macrocystis pyrifera P11B4 male)
CCAAAACCATTGGTCGATCCCACGCCTTCGATCCAGTTTGCATTAGGACC
AGCAGGAAGTGGGGCATCGAAGCACTATCATATCCACGCAGTCAATGCCT
TGGCATATGGAAAGAAACTCTGGGCCATAACTCCTCCGTCCCACACTGCA
TTCTCCCGCATGACTGCAATGTCCTATTTCACCGACTACCTTCCCAAGGA
GATGGAAAACACGCAATTCTGTATCCAAAATCCAGGTGATTTGGTCTTTG
TTCCTCAATTGTGGGGTCATGCTGTCCTCAACCTCAAAACTTCCCTTGCC
CTCTCTGTAGAATTCCACGCGTTTTCATGACCAAAACCATTGGTCGATCC
CACGCCTTCGATCCAGTTTGCATTAGGACCAGCAGGAAGTGGGGCATCGA
AGCACTATCATATCCACGCAGTCAATGCCTTGGCATATGGAAAGAAACTC
TGGGCCATAACTCCTCCGTCCCACACTGCATTCTCCCGCATGACTGCAAT
GTCCTATTTCACCGACTACCTTCCCAAGGAGATGGAAAACACGCAATTCT
GTATCCAAAATCCAGGTGATTTGGTCTTTGTTCCTCAATTGTGGGGTCAT
GCTGTCCTCAACCTCAAAACTTCCCTTGCCCTCTCTGTAGAATTCCACGC
GTTTTCATGA
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