mRNA_M-pyrifera_M_contig89626.20782.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89626.20782.1
Unique NamemRNA_M-pyrifera_M_contig89626.20782.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig89626.20782.1 vs. uniprot
Match: A0A136LQ60_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium OLB12 TaxID=1619897 RepID=A0A136LQ60_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 6.360e-6
Identity = 36/95 (37.89%), Postives = 47/95 (49.47%), Query Frame = 1 
Query:   61 LWGVNAAGGNEIDTEIDAGTLFNFDPELKQLDVNFSFESYPNGNRPGGRLIFIEN-KAYGTTADGGENYQGVLYLYDLDTEEKTALHHFDSETGS 342
            L+G+ + GG+      + G +F FDP         SF+  PNG+ P G LI   N K YG T+ GG    GVL+ YDL T E      F S  G+
Sbjct:   74 LYGLTSEGGSH-----NRGVIFEFDPASSVYKPLQSFQG-PNGSAPRGSLIVGANGKLYGMTSAGGNTDDGVLFEYDLSTNELNKKFDFSSTQGA 162
[Close]
BLAST of mRNA_M-pyrifera_M_contig89626.20782.1 vs. uniprot
Match: UPI002020894D (T9SS type A sorting domain-containing protein n=1 Tax=Polaribacter sp. Z022 TaxID=2927125 RepID=UPI002020894D)

HSP 1 Score: 55.8 bits (133), Expect = 8.620e-6
Identity = 39/110 (35.45%), Postives = 50/110 (45.45%), Query Frame = 1 
Query:   28 YTSISAQHKPTLWGVNAAGGNEIDTEIDAGTLFNFDPELKQLDVNFSF----ESYPNGNRPGGRLIFIEN-KAYGTTADGGENYQGVLYLYDLDTEEKTALHHFDSETGS 342
            Y S+   +   L+G+ AA G   D     G +F FD       V   F     S   G+ P G LI   N   YG T  GG N +GV++ Y++ T   T LH FD  TGS
Sbjct:   65 YGSLLLANNGKLYGMTAAYGKTQD-----GVIFEFDIATNNYVVIHDFYDSVSSNSTGSTPYGSLIQANNGNLYGVTNKGGLNGRGVIFEYNITTNNFTKLHDFDYSTGS 169
[Close]
BLAST of mRNA_M-pyrifera_M_contig89626.20782.1 vs. uniprot
Match: A0A7Y7AGH0_9FLAO (T9SS type A sorting domain-containing protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7Y7AGH0_9FLAO)

HSP 1 Score: 53.5 bits (127), Expect = 6.020e-5
Identity = 35/95 (36.84%), Postives = 47/95 (49.47%), Query Frame = 1 
Query:   64 WGVNAAGGNEIDTEIDAGTLFNFDPELKQLDVNFSFESYPNGNRPGGRLIFIEN-KAYGTTADGGENYQGVLYLYDLDTEEKTALHHFDSETGSF 345
            +G+ A+GG       D G L+ +DP L+ L   + F S  +G  P G L+   N K YG T  GG    GVL+ YDL+T   T    FD   G +
Sbjct:  495 YGLTASGGLN-----DRGVLYEWDPNLELLTKKYDF-STASGYFPLGNLVEANNGKLYGLTGYGGAADFGVLFEYDLNTNTYTIKAEFDGTNGQY 583
[Close]
BLAST of mRNA_M-pyrifera_M_contig89626.20782.1 vs. uniprot
Match: A0A1F3PPQ3_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Bacteroidetes bacterium RIFOXYA12_FULL_38_20 TaxID=1797368 RepID=A0A1F3PPQ3_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 8.520e-5
Identity = 29/79 (36.71%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:  115 GTLFNFDPELKQLDVNFSFESYPNGNRPGGRLIFIENKA-YGTTADGGENYQGVLYLYDLDTEEKTALHHF-DSETGSF 345
            G ++ +DP LK+    F F+   +G+ P   LI  +N   YGT A GG    GV++ +D+ T   T L+ F DS +GS+
Sbjct:  443 GVIYEYDPALKKYTKLFDFDGVNSGSHPYSGLIQADNGLLYGTAAGGGSYNFGVIFSFDIATNNFTKLYDFNDSTSGSY 521
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89626.20782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A136LQ60_9BACT6.360e-637.89Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
UPI002020894D8.620e-635.45T9SS type A sorting domain-containing protein n=1 ... [more]
A0A7Y7AGH0_9FLAO6.020e-536.84T9SS type A sorting domain-containing protein n=1 ... [more]
A0A1F3PPQ3_9BACT8.520e-536.71Por_Secre_tail domain-containing protein n=1 Tax=B... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89626contigM-pyrifera_M_contig89626:4..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size582
Cds size582
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816807.4050632-CDS-M-pyrifera_M_contig89626:3..5851622816807.4050632-CDS-M-pyrifera_M_contig89626:3..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89626 4..585 -
1692278190.2044017-CDS-M-pyrifera_M_contig89626:3..5851692278190.2044017-CDS-M-pyrifera_M_contig89626:3..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89626 4..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89626.20782.1prot_M-pyrifera_M_contig89626.20782.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89626 4..585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89626.20782.1

>prot_M-pyrifera_M_contig89626.20782.1 ID=prot_M-pyrifera_M_contig89626.20782.1|Name=mRNA_M-pyrifera_M_contig89626.20782.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=194bp
IISLIIIISYTSISAQHKPTLWGVNAAGGNEIDTEIDAGTLFNFDPELKQ
LDVNFSFESYPNGNRPGGRLIFIENKAYGTTADGGENYQGVLYLYDLDTE
EKTALHHFDSETGSFPGLEPLLAEGKIYGGTTEGGTNDAGVLYEFDPATD
AYTVLHEFDDTNDGKSLVAGLCVSDDVLYGITYEGGTSGLGTFF
back to top

mRNA from alignment at M-pyrifera_M_contig89626:4..585-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89626.20782.1 ID=mRNA_M-pyrifera_M_contig89626.20782.1|Name=mRNA_M-pyrifera_M_contig89626.20782.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig89626:4..585- (Macrocystis pyrifera P11B4 male)
ATCATCAGTCTAATTATAATTATTAGTTACACTTCTATATCCGCACAGCA
CAAGCCTACCCTATGGGGGGTGAACGCTGCTGGAGGTAATGAAATAGATA
CTGAAATAGATGCCGGGACGCTCTTCAATTTTGATCCTGAATTGAAACAA
CTCGATGTAAACTTCAGCTTTGAGTCGTATCCCAACGGTAACCGTCCTGG
TGGTCGACTGATCTTCATTGAAAACAAGGCCTATGGCACTACGGCCGATG
GCGGTGAAAATTATCAGGGCGTACTGTACCTCTACGATCTAGACACAGAA
GAAAAAACAGCCTTGCACCATTTTGATAGTGAAACGGGAAGCTTTCCAGG
CCTAGAGCCTCTGCTCGCGGAGGGCAAGATCTACGGCGGCACTACTGAGG
GAGGAACTAACGATGCAGGCGTGTTGTATGAATTTGACCCTGCTACTGAT
GCGTATACGGTATTGCATGAATTTGACGACACCAACGATGGAAAGTCTTT
GGTGGCCGGTTTATGTGTATCGGATGATGTGCTGTATGGCATCACTTACG
AAGGTGGCACGAGCGGCTTGGGCACATTTTTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig89626:4..585-

>mRNA_M-pyrifera_M_contig89626.20782.1 ID=mRNA_M-pyrifera_M_contig89626.20782.1|Name=mRNA_M-pyrifera_M_contig89626.20782.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1164bp|location=Sequence derived from alignment at M-pyrifera_M_contig89626:4..585- (Macrocystis pyrifera P11B4 male)
ATCATCAGTCTAATTATAATTATTAGTTACACTTCTATATCCGCACAGCA
CAAGCCTACCCTATGGGGGGTGAACGCTGCTGGAGGTAATGAAATAGATA
CTGAAATAGATGCCGGGACGCTCTTCAATTTTGATCCTGAATTGAAACAA
CTCGATGTAAACTTCAGCTTTGAGTCGTATCCCAACGGTAACCGTCCTGG
TGGTCGACTGATCTTCATTGAAAACAAGGCCTATGGCACTACGGCCGATG
GCGGTGAAAATTATCAGGGCGTACTGTACCTCTACGATCTAGACACAGAA
GAAAAAACAGCCTTGCACCATTTTGATAGTGAAACGGGAAGCTTTCCAGG
CCTAGAGCCTCTGCTCGCGGAGGGCAAGATCTACGGCGGCACTACTGAGG
GAGGAACTAACGATGCAGGCGTGTTGTATGAATTTGACCCTGCTACTGAT
GCGTATACGGTATTGCATGAATTTGACGACACCAACGATGGAAAGTCTTT
GGTGGCCGGTTTATGTGTATCGGATGATGTGCTGTATGGCATCACTTACG
AAGGTGGCACGAGCGGCTTGGGCACATTTTTCATCATCAGTCTAATTATA
ATTATTAGTTACACTTCTATATCCGCACAGCACAAGCCTACCCTATGGGG
GGTGAACGCTGCTGGAGGTAATGAAATAGATACTGAAATAGATGCCGGGA
CGCTCTTCAATTTTGATCCTGAATTGAAACAACTCGATGTAAACTTCAGC
TTTGAGTCGTATCCCAACGGTAACCGTCCTGGTGGTCGACTGATCTTCAT
TGAAAACAAGGCCTATGGCACTACGGCCGATGGCGGTGAAAATTATCAGG
GCGTACTGTACCTCTACGATCTAGACACAGAAGAAAAAACAGCCTTGCAC
CATTTTGATAGTGAAACGGGAAGCTTTCCAGGCCTAGAGCCTCTGCTCGC
GGAGGGCAAGATCTACGGCGGCACTACTGAGGGAGGAACTAACGATGCAG
GCGTGTTGTATGAATTTGACCCTGCTACTGATGCGTATACGGTATTGCAT
GAATTTGACGACACCAACGATGGAAAGTCTTTGGTGGCCGGTTTATGTGT
ATCGGATGATGTGCTGTATGGCATCACTTACGAAGGTGGCACGAGCGGCT
TGGGCACATTTTTC
back to top