mRNA_M-pyrifera_M_contig8960.20772.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8960.20772.1
Unique NamemRNA_M-pyrifera_M_contig8960.20772.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig8960.20772.1 vs. uniprot
Match: D8LGC8_ECTSI (Thiamine diphosphokinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGC8_ECTSI)

HSP 1 Score: 295 bits (756), Expect = 2.020e-96
Identity = 165/264 (62.50%), Postives = 187/264 (70.83%), Query Frame = 1
Query:    1 ALVLLNTKGDEEAKHLLRRLWAGAALRVCADGAANRLHDSFDG--------DRPGERERFVPDVIVGDLDSLRPEVSAFYEALGSEVKLVEDQDYNDFEKCLIEVEARLSTTQKAPPVAXXXXXXXEMLFSGEGGGVDSPXXXXRATPATATAASSDPLPVCCPATVVGLGAFGGRFDHEMASISLLHAYTSRFSRLVLMGSENVAFLLQPGLGHVVEPDSRFEGPTVGLIPVGGACRSVNTEGLKWNLEGGCLEFGVLVSSSN 768
            ALV+LNT+G+ E++ LLR LW  A LRVCADG ANRLHDSF G        DR  +R RFVPD+IVGDLDSLRPEV+ FYE LGSE+KL +DQD+ DFEKCL+EVE+RLS+        XXXXX                               S P    C ATVVGLGAFGGRFDHEM ++SLLHAYTSRF RLVLMG+ NVAFLLQPGL H V+PDSRFEGPTVGL+PVGG CR+V TEGL+WNL+GG LEFGV VSSSN
Sbjct:   94 ALVILNTQGEGESEGLLRHLWGRADLRVCADGGANRLHDSFGGXXXXGDVEDRHQDRARFVPDIIVGDLDSLRPEVARFYEGLGSEIKLRDDQDHCDFEKCLVEVESRLSSPXXXXXXXXXXXX-------------------------------SAP----CGATVVGLGAFGGRFDHEMQAVSLLHAYTSRFHRLVLMGAGNVAFLLQPGLSHAVQPDSRFEGPTVGLLPVGGPCRAVTTEGLRWNLDGGGLEFGVCVSSSN 322          
BLAST of mRNA_M-pyrifera_M_contig8960.20772.1 vs. uniprot
Match: A0A836CNJ4_9STRA (Thiamine diphosphokinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNJ4_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.450e-53
Identity = 113/259 (43.63%), Postives = 140/259 (54.05%), Query Frame = 1
Query:    1 ALVLLNTKGDEEAKHL-LRRLWAGAALRVCADGAANRLHDSFDGDRPGERER--FVPDVIVGDLDSLRPEVSAFYEALGSEVKLVEDQDYNDFEKCLIEVEARLSTTQKAPPVAXXXXXXXEMLFSGEGGGVDSPXXXXRATPATATAASSDPLPVCCPATVVGLGAFGGRFDHEMASISLLHAYTSRFSRLVLMGSENVAFLLQPGLGHVVEPDSRFEGPTVGLIPVGGACRSVNTEGLKWNLEGGCLEFGVLVSSSN 768
            A+++LN  G++    L LR  W  A+LR+CADG AN L+DS      GE+ R  F+PD++VGDLDSLRPEV+ +Y   G+ +  V DQD NDFEKCL +V A                                          +A AA+ D        TVV LGAFGGRFD EMA+  LL+ YT  F R VL+G  NV+FLL P   H + PD R EGP  GL+P+G  C SV T GL W+L    L FG  VSSSN
Sbjct:   42 AIIVLNNVGEDSGSSLFLRSAWHSASLRLCADGGANSLYDSL-----GEQNRSLFLPDMVVGDLDSLRPEVADYYRDSGAAIVKVSDQDRNDFEKCLQQVLA------------------------------------------SAGAAARD-------TTVVALGAFGGRFDQEMAAFHLLYQYTHAFRRFVLLGGGNVSFLLLPDRRHRIVPDPRMEGPFCGLLPIGNPCGSVTTSGLMWDLHQQPLAFGGRVSSSN 246          
BLAST of mRNA_M-pyrifera_M_contig8960.20772.1 vs. uniprot
Match: A0A7S2V3Z0_9STRA (Thiamine diphosphokinase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3Z0_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.100e-48
Identity = 111/265 (41.89%), Postives = 142/265 (53.58%), Query Frame = 1
Query:    1 ALVLLNTK--GDEEAKHLLRRLWAGAALRVCADGAANRLHDSF------DGDRPGERER-FVPDVIVGDLDSLRPEVSAFYEALGSEVKLVEDQDYNDFEKCLIEVEARLSTTQKAPPVAXXXXXXXEMLFSGEGGGVDSPXXXXRATPATATAASSDPLPVCCPATVVGLGAFGGRFDHEMASISLLHAYTSRFSRLVLMGSENVAFLLQPGLGHVVEPDSRFEGPTVGLIPVGGACRSVNTEGLKWNLEGGCLEFGVLVSSSN 768
            ALV+LNT   GD        RLW+ +  R+CADG ANRL+D         G+ P E  R +VPDVI GDLDSLRP+V +FY++LG+ +    DQ  NDF K L E+    S   +  P++                                              TV+ LGAFGGRFD EMA+I+ L+ +   F RL+L+  +N+ FLL PG  H V P++  EGPT GL+PVGGACR V T GLKW+L+   L FG LVSSSN
Sbjct:   73 ALVILNTNCCGDS-----FERLWSLSTFRICADGGANRLYDMVVKLARKRGENPKELVRKYVPDVIKGDLDSLRPDVGSFYQSLGTRIIRDRDQSCNDFYKALSELR---SMQLEQYPLSRM--------------------------------------------TVMALGAFGGRFDQEMAAINALYEWDQVFERLLLLSEQNLGFLLSPGR-HRVVPNTLVEGPTCGLLPVGGACRGVTTRGLKWDLKDQVLRFGGLVSSSN 284          
BLAST of mRNA_M-pyrifera_M_contig8960.20772.1 vs. uniprot
Match: A0A7S3YA89_HETAK (Thiamine diphosphokinase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA89_HETAK)

HSP 1 Score: 162 bits (409), Expect = 2.170e-44
Identity = 105/258 (40.70%), Postives = 131/258 (50.78%), Query Frame = 1
Query:    1 ALVLLNTKGDEEAKHLLRRLWAGAALRVCADGAANRLHDSFDGDRPGERERFVPDVIVGDLDSLRPEVSAFYEALGSEVKLVEDQDYNDFEKCLIEVEARLSTTQKAPPVAXXXXXXXEMLFSGEGGGVDSPXXXXRATPATATAASSDPLPVCCPATVVGLGAFGGRFDHEMASISLLHAYTSRFSR--LVLMGSENVAFLLQPGLGHVVEPDSRFEGPTVGLIPVGGACRSVNTEGLKWNLEGGCLEFGVLVSSSN 768
            AL++LNT    ++    RRLW  +  R+CADG ANRLHDS      GER R VP  I GDLDSLRPEV  FY +LG+E+    DQD NDF+KCL E  AR                  +  F G                                 T + LGAFGGRFD EMA++     +    SR  +VL+  EN+  LL PG  H + P+   EGPT GL+P+GG   S+ T GLKWNL    + FG L+S+SN
Sbjct:  102 ALIVLNTDCCTQS---FRRLWGLSTFRLCADGGANRLHDSLRA-AGGERARHVPHAIKGDLDSLRPEVGEFYRSLGAEIIHDGDQDCNDFQKCLREARAR-----------------RDAHFPGRR------------------------------LTALALGAFGGRFDQEMAAVHACFEFQRGGSRDRVVLLSDENLGLLLGPGR-HRLAPNPALEGPTCGLLPIGGPVSSLTTTGLKWNLSNEPVRFGGLISTSN 307          
BLAST of mRNA_M-pyrifera_M_contig8960.20772.1 vs. uniprot
Match: A0A0M0JVD9_9EUKA (Thiamine diphosphokinase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVD9_9EUKA)

HSP 1 Score: 166 bits (420), Expect = 1.400e-43
Identity = 111/267 (41.57%), Postives = 147/267 (55.06%), Query Frame = 1
Query:    1 ALVLLNTKGDEEAKHLLRRLWAGAALRVCADGAANRLHDSFDGDRPGERERFVPDVIVGDLDSLRPEVSAFYEALGSEVKLVEDQDYNDFEKCL--------IEVEARLSTTQKAP-PVAXXXXXXXEMLFSGE-GGGVDSPXXXXRATPATATAASSDPLPVCCPATVVGLGAFGGRFDHEMASISLLHAYTSRFSRLVLMGSENVAFLLQPGLGHVVEPDSRFEGPTVGLIPVGGACRSVNTEGLKWNLEGG-CLEFGVLVSSSN 768
            ALV+LN +  +        LW  +++++CADGAANRLHD  +     +R   +PD+I GDLDSLR +VS+FY A G  +  V +Q+ NDFEKCL         EV A     + AP PV+            G  GGGV             A  A+  PL      +VV  GAFGGR D +MA++++ + +   F  L L+   +V FLL+PG  HV+EPD   E  + GLIP+GG C  V T GL+WNL+G   LEFG LVSSSN
Sbjct:   30 ALVILNVECGDSKGTRFEHLWQQSSVKLCADGAANRLHDRLE---EPQRSSMLPDIITGDLDSLRGDVSSFYAARGVVITGVSEQESNDFEKCLRWLQREQDSEVAAAAEQERGAPYPVSAEASATTPYRDVGSRGGGV-------------AERAAGLPL-----YSVVAYGAFGGRLDQQMANLNMAYTFDC-FRHLFLLSDHSVVFLLRPG-AHVIEPDLDAEDGSCGLIPLGGRCEGVVTTGLRWNLDGDRALEFGDLVSSSN 273          
BLAST of mRNA_M-pyrifera_M_contig8960.20772.1 vs. uniprot
Match: A0A7S2NTE4_9STRA (Thiamine diphosphokinase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NTE4_9STRA)

HSP 1 Score: 157 bits (398), Expect = 8.600e-43
Identity = 95/241 (39.42%), Postives = 122/241 (50.62%), Query Frame = 1
Query:   46 LLRRLWAGAALRVCADGAANRLHDSFDGDRPGERERFVPDVIVGDLDSLRPEVSAFYEALGSEVKLVEDQDYNDFEKCLIEVEARLSTTQKAPPVAXXXXXXXEMLFSGEGGGVDSPXXXXRATPATATAASSDPLPVCCPATVVGLGAFGGRFDHEMASISLLHAYTSRFSRLVLMGSENVAFLLQPGLGHVVEPDSRFEGPTVGLIPVGGACRSVNTEGLKWNLEGGCLEFGVLVSSSN 768
            + +RLW  ++ RVCADG ANRL D+         E F+PD+I GDLDSLR +V  +Y + G  V+   DQD ND +KCL  +  + +  Q                                        +SS PL VC        GAFGGRFD EMASI+ L+ +  +F RL+L   E  A LL  G+ + +  +   EGPT GLIP+G  C S  T GLKWNL    LEFG +VSSSN
Sbjct:  121 IFQRLWNLSSYRVCADGGANRLLDAVTAAATTNPELFIPDLIRGDLDSLRSDVRQYYSSNGCSVEQDFDQDTNDLDKCLQALAMKYTNEQSE--------------------------------------SSSSPLTVCV------FGAFGGRFDQEMASINALYRWKGKFHRLILYTEETSALLLPEGVENRIRINKELEGPTCGLIPIGLRCESCTTTGLKWNLSNDILEFGGMVSSSN 317          
BLAST of mRNA_M-pyrifera_M_contig8960.20772.1 vs. uniprot
Match: F0XZ37_AURAN (Thiamine diphosphokinase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ37_AURAN)

HSP 1 Score: 144 bits (362), Expect = 2.210e-38
Identity = 98/258 (37.98%), Postives = 118/258 (45.74%), Query Frame = 1
Query:    1 ALVLLNTKGDEEAKHLLRRLWAGAALRVCADGAANRLHDSFDGDRPGERERFVPDVIVGDLDSLRPEVSAFYEALGSEVKLVEDQDYNDFEKCLIEVEARLSTTQKAPPVAXXXXXXXEMLFSGEGGGVDSPXXXXRATPATATAASSDPLPVCCPATVVGLGAFGGRFDHEMASISLLHAYTSRF--SRLVLMGSENVAFLLQPGLGHVVEPDSRFEGPTVGLIPVGGACRSVNTEGLKWNLEGGCLEFGVLVSSSN 768
            ALV+LN+        LL +LWA +  RVCADG ANRL D            FVPD IVGDLDS R +V   Y A G+ V  VEDQD ND  K L  V  R    ++   V                                                   +GAFGGRFD EMA+   LH + +R   + + L   EN A LL PG  H +      EGP  GL+P+G  C  V T GL+WNL+GG L FG LVS+SN
Sbjct:   28 ALVVLNSASFGAG--LLEKLWAASTYRVCADGGANRLFDLLG-------PSFVPDAIVGDLDSARGDVLEAYAAGGAAVARVEDQDANDLSKALDAVAERWRGGRRGAAVVRV------------------------------------------------VGAFGGRFDQEMAAFDALHKFAARDRDASMALYSDENAATLLAPGPSHEIVVRHDAEGPHCGLVPLGAPCEWVTTAGLQWNLDGGALAFGDLVSTSN 228          
BLAST of mRNA_M-pyrifera_M_contig8960.20772.1 vs. uniprot
Match: A0A1L8FWN4_XENLA (Thiamine pyrophosphokinase n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A1L8FWN4_XENLA)

HSP 1 Score: 141 bits (356), Expect = 1.230e-37
Identity = 96/256 (37.50%), Postives = 127/256 (49.61%), Query Frame = 1
Query:    4 LVLLNTKGDEEAKHLLRRLWAGAALRVCADGAANRLHDSFDGDRPGERERFVPDVIVGDLDSLRPEVSAFYEALGSEVKLVEDQDYNDFEKCLIEVEARLSTTQKAPPVAXXXXXXXEMLFSGEGGGVDSPXXXXRATPATATAASSDPLPVCCPATVVGLGAFGGRFDHEMASI-SLLHAYTSRFSRLVLMGSENVAFLLQPGLGHVVEPDSRFEGPTVGLIPVGGACRSVNTEGLKWNLEGGCLEFGVLVSSSN 768
            L++LN   D   K LL  LW  A  + CADG ANRL+ S +    G +ER++PD I GD DS++PE+  FY   G E+    DQD+ DF KCL  ++ ++   QK   V                                                +V LG  GGRFD  MAS+ +L HA T     +V++   ++ +LL+PG  HV+   +  EG   GLIPVG AC SV T GLKWNL  G L+FG LVS+SN
Sbjct:   21 LIILNQPLD---KGLLLHLWGKAIFKACADGGANRLYQSVE----GSQERYLPDFISGDFDSIKPEIKMFYSEQGCELVDTPDQDFTDFTKCLSILQDKIK--QKNVKVDI----------------------------------------------IVVLGGLGGRFDQIMASVETLYHAVTPL--PVVIIQDTSLIYLLKPGK-HVLHVATGKEGKWCGLIPVGSACNSVTTTGLKWNLTAGVLKFGTLVSTSN 218          
BLAST of mRNA_M-pyrifera_M_contig8960.20772.1 vs. uniprot
Match: A0A0L0H5Y1_SPIPD (Thiamine pyrophosphokinase n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0H5Y1_SPIPD)

HSP 1 Score: 142 bits (359), Expect = 1.890e-37
Identity = 97/257 (37.74%), Postives = 135/257 (52.53%), Query Frame = 1
Query:    1 ALVLLNTKGDEEAKHLLRRLWAGAALRVCADGAANRLHDSFDGDRPGERERFVPDVIVGDLDSLRPEVSAFYEALGSEVKLVEDQDYNDFEKCLIEVEARLSTTQKAPPVAXXXXXXXEMLFSGEGGGVDSPXXXXRATPATATAASSDPLPVCCPATVVGLGAFGGRFDHEMASISLLHAYTSRFSRLVLMGSENVAFLLQPGLGHVVEPDSRFEGPTVGLIPVGGACRSVNTEGLKWNLEGGC-LEFGVLVSSSN 768
            AL++LN       K  L+R+W   A+  CADG ANRL+ +F+ +   ERER++PD I GD DS+   V  +Y A G+ +   +DQD  DF+KCL+ +      T +             +LF                +P   +A  S P P      VV LGA  GRFDH M+SI  L        ++ L+ SE+VAFLL+PG+ H +  ++  EGPT GLIP+G     V T+GLKWN++    L F  LVS+SN
Sbjct:   39 ALIILNQPISN--KSYLQRIWHNTAIHFCADGGANRLYHAFEDNE--ERERYIPDYICGDFDSIDTAVKDWYAAKGTIIDNSKDQDTTDFQKCLMVLNNVYEPTPENDTPPPETSTLSRLLFP------------HCLSPTLVSAEVSPPSP--SKYEVVVLGALSGRFDHIMSSIHTLFMVAPE-RKVYLVSSESVAFLLRPGM-HDIRCNTEIEGPTCGLIPIGVNIARVVTQGLKWNVDHSTPLSFPSLVSTSN 275          
BLAST of mRNA_M-pyrifera_M_contig8960.20772.1 vs. uniprot
Match: A0A485LA89_9STRA (Thiamine pyrophosphokinase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LA89_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.360e-36
Identity = 93/256 (36.33%), Postives = 128/256 (50.00%), Query Frame = 1
Query:    1 ALVLLNTKGDEEAKHLLRRLWAGAALRVCADGAANRLHDSFDGDRPGERERFVPDVIVGDLDSLRPEVSAFYEALGSEVKLVEDQDYNDFEKCLIEVEARLSTTQKAPPVAXXXXXXXEMLFSGEGGGVDSPXXXXRATPATATAASSDPLPVCCPATVVGLGAFGGRFDHEMASISLLHAYTSRFSRLVLMGSENVAFLLQPGLGHVVEPDSRFEGPTVGLIPVGGACRSVNTEGLKWNLEGGCLEFGVLVSSSN 768
            AL+++N  G   +      LW  A + VCADG AN+L D    ++  +   FVP  I GDLDS+RP+V+A+++  G++V    DQD ND +KCL    + L   Q    V                                   AS  P+ +     V+ +GA GGRFD EM +I+ L  ++S F R+ L+     A LL PG  H + P+   EG T GLIP+GG C S+ T+GLKWNL      FG LVS+SN
Sbjct:   37 ALIVINGIGLVSS---FDTLWNKAKITVCADGGANKLFDYIHKEKVPKN--FVPQYIKGDLDSIRPDVAAYFQQHGAQVIKDPDQDSNDLDKCL----SLLRNLQSDLDVD----------------------------------ASGAPVKL----NVLVVGAMGGRFDQEMQNINALFQWSSIFERMTLVSDSTSATLLVPGK-HTIRPNFSIEGRTCGLIPIGGPCESLTTDGLKWNLSNDSTSFGGLVSTSN 244          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8960.20772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGC8_ECTSI2.020e-9662.50Thiamine diphosphokinase n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CNJ4_9STRA1.450e-5343.63Thiamine diphosphokinase n=1 Tax=Tribonema minus T... [more]
A0A7S2V3Z0_9STRA1.100e-4841.89Thiamine diphosphokinase n=1 Tax=Fibrocapsa japoni... [more]
A0A7S3YA89_HETAK2.170e-4440.70Thiamine diphosphokinase (Fragment) n=1 Tax=Hetero... [more]
A0A0M0JVD9_9EUKA1.400e-4341.57Thiamine diphosphokinase n=1 Tax=Chrysochromulina ... [more]
A0A7S2NTE4_9STRA8.600e-4339.42Thiamine diphosphokinase n=1 Tax=Leptocylindrus da... [more]
F0XZ37_AURAN2.210e-3837.98Thiamine diphosphokinase n=1 Tax=Aureococcus anoph... [more]
A0A1L8FWN4_XENLA1.230e-3737.50Thiamine pyrophosphokinase n=1 Tax=Xenopus laevis ... [more]
A0A0L0H5Y1_SPIPD1.890e-3737.74Thiamine pyrophosphokinase n=1 Tax=Spizellomyces p... [more]
A0A485LA89_9STRA3.360e-3636.33Thiamine pyrophosphokinase n=1 Tax=Aphanomyces ste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8960contigM-pyrifera_M_contig8960:4380..5147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.1
Seed ortholog evalue1e-78
Seed eggNOG ortholog2880.D8LGC8
Preferred nameTPK1
KEGG rclassRC00002,RC00004,RC00017,RC00037
KEGG koko:K00784,ko:K00949,ko:K08851,ko:K13511
KEGG ReactionR00619,R09037
KEGG Pathwayko00564,ko00730,ko01100,ko03013,map00564,map00730,map01100,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004788,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009108,GO:0009110,GO:0009228,GO:0009229,GO:0009987,GO:0016462,GO:0016740,GO:0016772,GO:0016778,GO:0016787,GO:0016817,GO:0016818,GO:0017110,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0036172,GO:0042357,GO:0042364,GO:0042723,GO:0042724,GO:0043094,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044715,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Belongs to the thiamine pyrophosphokinase family
EggNOG OGsCOG1564@1,KOG3153@2759
Ec32 ortholog descriptionThiamin pyrophosphokinase, catalytic domain
Ec32 orthologEc-06_002580.1
EC2.7.11.1,2.7.6.2,3.1.26.11
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01004,ko03016
Exons1
Model size768
Cds size768
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816807.0079694-CDS-M-pyrifera_M_contig8960:4379..51471622816807.0079694-CDS-M-pyrifera_M_contig8960:4379..5147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8960 4380..5147 -
1692278189.9767153-CDS-M-pyrifera_M_contig8960:4379..51471692278189.9767153-CDS-M-pyrifera_M_contig8960:4379..5147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8960 4380..5147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8960.20772.1prot_M-pyrifera_M_contig8960.20772.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8960 4380..5147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8960.20772.1

>prot_M-pyrifera_M_contig8960.20772.1 ID=prot_M-pyrifera_M_contig8960.20772.1|Name=mRNA_M-pyrifera_M_contig8960.20772.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=256bp
ALVLLNTKGDEEAKHLLRRLWAGAALRVCADGAANRLHDSFDGDRPGERE
RFVPDVIVGDLDSLRPEVSAFYEALGSEVKLVEDQDYNDFEKCLIEVEAR
LSTTQKAPPVAAAASSTSEMLFSGEGGGVDSPSPPPRATPATATAASSDP
LPVCCPATVVGLGAFGGRFDHEMASISLLHAYTSRFSRLVLMGSENVAFL
LQPGLGHVVEPDSRFEGPTVGLIPVGGACRSVNTEGLKWNLEGGCLEFGV
LVSSSN
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mRNA from alignment at M-pyrifera_M_contig8960:4380..5147-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8960.20772.1 ID=mRNA_M-pyrifera_M_contig8960.20772.1|Name=mRNA_M-pyrifera_M_contig8960.20772.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig8960:4380..5147- (Macrocystis pyrifera P11B4 male)
GCGCTCGTGCTCCTCAACACTAAAGGCGACGAGGAGGCTAAGCACCTCTT GCGTCGCCTCTGGGCCGGGGCGGCGCTCCGGGTGTGCGCCGACGGTGCCG CCAACCGGCTCCACGACAGCTTCGACGGCGACCGCCCAGGGGAGAGGGAA CGGTTCGTCCCCGACGTGATAGTCGGCGACCTGGACTCGCTCCGCCCGGA GGTCTCCGCTTTCTACGAGGCGCTTGGGTCCGAAGTGAAGCTGGTGGAGG ACCAAGACTACAACGACTTCGAGAAGTGCCTGATCGAGGTCGAGGCCCGG CTGTCGACGACGCAGAAGGCACCACCGGTCGCGGCCGCCGCCTCCTCCAC CTCCGAGATGCTTTTTTCCGGTGAGGGGGGAGGGGTGGATTCGCCATCGC CCCCGCCGCGTGCGACGCCAGCGACAGCAACAGCAGCAAGCAGCGACCCG CTCCCCGTCTGCTGCCCCGCGACCGTGGTGGGCCTTGGGGCCTTCGGCGG GCGGTTCGACCACGAGATGGCGAGCATCAGCCTCCTGCACGCCTACACCT CTCGCTTCTCCCGGCTCGTTCTTATGGGGTCCGAAAACGTCGCCTTCTTG CTCCAGCCGGGGCTGGGCCACGTGGTCGAGCCGGACTCGCGATTTGAGGG GCCCACCGTCGGCCTTATCCCCGTCGGTGGCGCCTGCAGGTCCGTCAACA CGGAGGGGCTCAAGTGGAACCTCGAGGGCGGTTGCCTCGAGTTCGGCGTT CTCGTGAGCTCGTCGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8960:4380..5147-

>mRNA_M-pyrifera_M_contig8960.20772.1 ID=mRNA_M-pyrifera_M_contig8960.20772.1|Name=mRNA_M-pyrifera_M_contig8960.20772.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1536bp|location=Sequence derived from alignment at M-pyrifera_M_contig8960:4380..5147- (Macrocystis pyrifera P11B4 male)
GCGCTCGTGCTCCTCAACACTAAAGGCGACGAGGAGGCTAAGCACCTCTT
GCGTCGCCTCTGGGCCGGGGCGGCGCTCCGGGTGTGCGCCGACGGTGCCG
CCAACCGGCTCCACGACAGCTTCGACGGCGACCGCCCAGGGGAGAGGGAA
CGGTTCGTCCCCGACGTGATAGTCGGCGACCTGGACTCGCTCCGCCCGGA
GGTCTCCGCTTTCTACGAGGCGCTTGGGTCCGAAGTGAAGCTGGTGGAGG
ACCAAGACTACAACGACTTCGAGAAGTGCCTGATCGAGGTCGAGGCCCGG
CTGTCGACGACGCAGAAGGCACCACCGGTCGCGGCCGCCGCCTCCTCCAC
CTCCGAGATGCTTTTTTCCGGTGAGGGGGGAGGGGTGGATTCGCCATCGC
CCCCGCCGCGTGCGACGCCAGCGACAGCAACAGCAGCAAGCAGCGACCCG
CTCCCCGTCTGCTGCCCCGCGACCGTGGTGGGCCTTGGGGCCTTCGGCGG
GCGGTTCGACCACGAGATGGCGAGCATCAGCCTCCTGCACGCCTACACCT
CTCGCTTCTCCCGGCTCGTTCTTATGGGGTCCGAAAACGTCGCCTTCTTG
CTCCAGCCGGGGCTGGGCCACGTGGTCGAGCCGGACTCGCGATTTGAGGG
GCCCACCGTCGGCCTTATCCCCGTCGGTGGCGCCTGCAGGTCCGTCAACA
CGGAGGGGCTCAAGTGGAACCTCGAGGGCGGTTGCCTCGAGTTCGGCGTT
CTCGTGAGCTCGTCGAACGCGCTCGTGCTCCTCAACACTAAAGGCGACGA
GGAGGCTAAGCACCTCTTGCGTCGCCTCTGGGCCGGGGCGGCGCTCCGGG
TGTGCGCCGACGGTGCCGCCAACCGGCTCCACGACAGCTTCGACGGCGAC
CGCCCAGGGGAGAGGGAACGGTTCGTCCCCGACGTGATAGTCGGCGACCT
GGACTCGCTCCGCCCGGAGGTCTCCGCTTTCTACGAGGCGCTTGGGTCCG
AAGTGAAGCTGGTGGAGGACCAAGACTACAACGACTTCGAGAAGTGCCTG
ATCGAGGTCGAGGCCCGGCTGTCGACGACGCAGAAGGCACCACCGGTCGC
GGCCGCCGCCTCCTCCACCTCCGAGATGCTTTTTTCCGGTGAGGGGGGAG
GGGTGGATTCGCCATCGCCCCCGCCGCGTGCGACGCCAGCGACAGCAACA
GCAGCAAGCAGCGACCCGCTCCCCGTCTGCTGCCCCGCGACCGTGGTGGG
CCTTGGGGCCTTCGGCGGGCGGTTCGACCACGAGATGGCGAGCATCAGCC
TCCTGCACGCCTACACCTCTCGCTTCTCCCGGCTCGTTCTTATGGGGTCC
GAAAACGTCGCCTTCTTGCTCCAGCCGGGGCTGGGCCACGTGGTCGAGCC
GGACTCGCGATTTGAGGGGCCCACCGTCGGCCTTATCCCCGTCGGTGGCG
CCTGCAGGTCCGTCAACACGGAGGGGCTCAAGTGGAACCTCGAGGGCGGT
TGCCTCGAGTTCGGCGTTCTCGTGAGCTCGTCGAAC
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