mRNA_M-pyrifera_M_contig89484.20744.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89484.20744.1
Unique NamemRNA_M-pyrifera_M_contig89484.20744.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89484.20744.1 vs. uniprot
Match: A0A2D5MTY3_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5MTY3_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.940e-17
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 1
Query:    7 PVNCTVGEWGEWGKCDVACGKGHQTRTRNITREAANGGV-CPYELEEVRKCNNGPCPPNDDXXXXGVDVDCEMSPFTPTGECVPTVPGATCGPGKQTEERHVVTPASGNGTPCPTDMERQVNCSLGSCLPD 396
            PV+C + +W  WG C   CG+G + RTR +T EAA+GGV CP   EEV  C+   CP           ++CE+  +T  G+C      + CGPG ++  R V   A   GT C   +  + +C +  C  D
Sbjct:  364 PVDCVMTQWTGWGACSETCGEGTKKRTREVTTEAAHGGVECPDGREEVDSCHVVSCP-----------INCEVGQWTNWGDC-----SSECGPGSKSRTRAVSIEAQFGGTACDEALGEEADCEVAPCPVD 478          
BLAST of mRNA_M-pyrifera_M_contig89484.20744.1 vs. uniprot
Match: H2XZ13_CIOIN (Uncharacterized protein n=19 Tax=Ciona intestinalis TaxID=7719 RepID=H2XZ13_CIOIN)

HSP 1 Score: 83.2 bits (204), Expect = 1.330e-16
Identity = 44/130 (33.85%), Postives = 65/130 (50.00%), Query Frame = 1
Query:   10 VNCTVGEWGEWGKCDVACGKGHQTRTRNITREAANGGV-CPYELEEVRKCNNGPCPPNDDXXXXGVDVDCEMSPFTPTGECVPTVPGATCGPGKQTEERHVVTPASGNGTPCPTDMERQVNCSLGSCLPD 396
            ++C VG W ++G+C  +CG G +TRTR I     +GG  CP  L + + CNN  CP           +DC + P++  G C      A+CG G++T  R ++T     GT CP   + Q  C+   C  D
Sbjct:  168 IDCKVGPWSKFGRCSASCGGGRKTRTRKIITRPQHGGTRCPA-LSDTQSCNNNNCP-----------IDCRVGPWSKFGRC-----SASCGGGRKTRTRKIITRPQYGGTKCPALTDTQT-CNKNICSID 279          
BLAST of mRNA_M-pyrifera_M_contig89484.20744.1 vs. uniprot
Match: A0A2D5MTS7_9BACT (TSP1_spondin domain-containing protein (Fragment) n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D5MTS7_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 1.460e-15
Identity = 42/127 (33.07%), Postives = 60/127 (47.24%), Query Frame = 1
Query:   10 VNCTVGEWGEWGKCDVACGKGHQTRTRNITREAANGGV-CPYELEEVRKCNNGPCPPNDDXXXXGVDVDCEMSPFTPTGECVPTVPGATCGPGKQTEERHVVTPASGNGTPCPTDMERQVNCSLGSC 387
            V+C   EW  WG+C   CG G   RTR +T +AA+GGV CP  +EE + C+  PCP           +DC +  +   G+C      + CGPG +   R V T     G  C   ++   +C +  C
Sbjct:   90 VDCAFTEWSGWGECSETCGDGTSKRTREVTTDAAHGGVACPDSMEEDKACHITPCP-----------IDCVLGQWANWGDC-----SSECGPGSRERARVVDTQEQHGGAACEGALQESEDCEVKPC 200          
BLAST of mRNA_M-pyrifera_M_contig89484.20744.1 vs. uniprot
Match: A0A8J2ATN7_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2ATN7_9DINO)

HSP 1 Score: 76.3 bits (186), Expect = 1.510e-13
Identity = 45/136 (33.09%), Postives = 66/136 (48.53%), Query Frame = 1
Query:    7 PVNCTVGEWGEWGKCDVACGKGHQTRTRNITREAANGG-VCPYELEEVRKCNNGPCP-PNDDXXXXGVDVDCEMSPFTPTGECVPTVPGATCGPGKQTEERHVVTPASGNGTPCP------TDMERQVNCSLGSCL 390
            P++C +G+WG+W  C   CG G QTR+R + ++A  GG +C  +L+E+R CN   C  P  +         CE S +   G C       +CG G+   ER V+   +  G PC       T ME +  C+   CL
Sbjct:  345 PIDCKLGDWGDWATCSATCGGGEQTRSRLVVQQAKYGGAICHGDLKEIRGCNAAVCELPKKEVTRKN----CEWSNWDTWGAC-----SVSCGGGQMVRERQVMKMPNEYGEPCTHPDGHKTSMELK-ECNTQPCL 470          
BLAST of mRNA_M-pyrifera_M_contig89484.20744.1 vs. uniprot
Match: A0A7S4UB27_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UB27_9DINO)

HSP 1 Score: 73.2 bits (178), Expect = 1.850e-12
Identity = 42/127 (33.07%), Postives = 61/127 (48.03%), Query Frame = 1
Query:   10 VNCTVGEWGEWGKCDVACGKGHQTRTRNITREAANGGV-CPYELEEVRKCNNGPCPPNDDXXXXGVDVDCEMSPFTPTGECVPTVPGATCGPGKQTEERHVVTPASGNGTPCPTDMERQVNCSLGSC 387
            ++C +G WGEW +CD  CG G + R R + +EA +GG  C  EL E R C + PC    +       VDC    ++  G C      + C  G++T  RHV+  A   G PC   +  +    +G C
Sbjct: 1307 MDCLLGVWGEWSRCDATCGGGQRRREREVMQEARHGGKGCNGELSETRSCASVPCLAPQER------VDCAWGDWSSWGAC------SKCS-GQRTRFRHVLREARNGGEPCKAGVAEE----MGKC 1416          
BLAST of mRNA_M-pyrifera_M_contig89484.20744.1 vs. uniprot
Match: A0A8B6H814_MYTGA (D-amino-acid oxidase n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6H814_MYTGA)

HSP 1 Score: 70.9 bits (172), Expect = 1.170e-11
Identity = 42/113 (37.17%), Postives = 53/113 (46.90%), Query Frame = 1
Query:    7 PVNCTVGEWGEWGKCDVACGKGHQTRTRNITREAANGGVCPYELEEVRKCNNGPCPPNDDXXXXGVDVDCEMSPFTPTGECVPTVPGATCGPGKQTEERHVVTPASGNGTPCP 345
            PVNC +GEWGEW  C+  CG G Q RTR + +    G  C   LE   +     C          V+VDC +S ++    CV  +    CG G +   R V TPA   G PCP
Sbjct:  203 PVNCVLGEWGEWSLCNATCGNGLQKRTRFVQKAECGGESC---LETPDEFQYKDC-------TKFVNVDCVISQWSIWTSCV--LGNGYCGDGLKNRTRSVTTPAECQGQPCP 303          
BLAST of mRNA_M-pyrifera_M_contig89484.20744.1 vs. uniprot
Match: A0A0R3X4C2_HYDTA (SMB domain-containing protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3X4C2_HYDTA)

HSP 1 Score: 68.6 bits (166), Expect = 1.660e-11
Identity = 32/57 (56.14%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    4 EPVNCTVGEWGEWGKCDVACGKGHQTRTRNITREAANGG-VCPYELEEVRKCNNGPC 171
            +P+NC V  W  W  C+  CGKG+QTRTR+ITREAANGG  CP  L E R C+   C
Sbjct:  106 KPINCDVSAWSRWSPCNRLCGKGNQTRTRSITREAANGGDQCPL-LMESRTCSGYIC 161          
BLAST of mRNA_M-pyrifera_M_contig89484.20744.1 vs. uniprot
Match: A0A7S0ATG0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0ATG0_9DINO)

HSP 1 Score: 64.3 bits (155), Expect = 1.000e-10
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 1
Query:   10 VNCTVGEWGEWGKCDVACGKGHQTRTRNITREAANGG-VCPYELEEVRKCNNGPCPP 177
            V+C + +W +WG CDV CG G  +R+R++ REAANGG  C   L E   C   PC P
Sbjct:   23 VHCRLSDWQDWGVCDVQCGVGQMSRSRDVLREAANGGQACNDNLAETTPCELSPCHP 79          
BLAST of mRNA_M-pyrifera_M_contig89484.20744.1 vs. uniprot
Match: A0A0R3W6I4_TAEAS (SMB domain-containing protein n=1 Tax=Taenia asiatica TaxID=60517 RepID=A0A0R3W6I4_TAEAS)

HSP 1 Score: 65.9 bits (159), Expect = 4.840e-10
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   10 VNCTVGEWGEWGKCDVACGKGHQTRTRNITREAANGG-VCPYELEEVRKCNNGPC 171
            +NC V  W  W  C+  CGKG+QTRTR+ITREAANGG  CP  L E R C+   C
Sbjct:  100 INCDVSAWSRWSPCNRLCGKGNQTRTRSITREAANGGDQCPL-LMESRVCSGYTC 153          
BLAST of mRNA_M-pyrifera_M_contig89484.20744.1 vs. uniprot
Match: A0A6C0CRT9_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CRT9_9ZZZZ)

HSP 1 Score: 66.2 bits (160), Expect = 4.860e-10
Identity = 41/134 (30.60%), Postives = 70/134 (52.24%), Query Frame = 1
Query:    4 EPVNCTVGEWGEWGKCDVACGKGHQTRTRNITREAANGGV-CPY--ELEEVRKCNNGPCPPNDDXXXXGVDVDCEMSPFTPTGECVPTVPGATCGPGKQTEERHVVTPASGNGTPCPTDMERQVNCSLGSCLPD 396
            + ++C +G W   G C+V+CG G  ++TR IT++A+  G+ CP   +L +   CN  PCP           ++C +S +T   EC  +VP   CG G + + R ++   +  G PC   + + V+C++  C  D
Sbjct:   25 DSIDCQLGSWVSVGVCNVSCGGGFISQTRQITQQASENGIQCPSVDQLTQKMPCNTQPCP-----------INCSLSLWT-DDEC--SVP---CGGGTRRQTRSILIQNAFGGEPC-ASLTQNVSCNVQPCSID 140          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89484.20744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D5MTY3_9BACT1.940e-1735.11Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
H2XZ13_CIOIN1.330e-1633.85Uncharacterized protein n=19 Tax=Ciona intestinali... [more]
A0A2D5MTS7_9BACT1.460e-1533.07TSP1_spondin domain-containing protein (Fragment) ... [more]
A0A8J2ATN7_9DINO1.510e-1333.09Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A7S4UB27_9DINO1.850e-1233.07Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A8B6H814_MYTGA1.170e-1137.17D-amino-acid oxidase n=1 Tax=Mytilus galloprovinci... [more]
A0A0R3X4C2_HYDTA1.660e-1156.14SMB domain-containing protein n=1 Tax=Hydatigena t... [more]
A0A7S0ATG0_9DINO1.000e-1047.37Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A0R3W6I4_TAEAS4.840e-1056.36SMB domain-containing protein n=1 Tax=Taenia asiat... [more]
A0A6C0CRT9_9ZZZZ4.860e-1030.60Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89484contigM-pyrifera_M_contig89484:101..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score87.8
Seed ortholog evalue4.1e-15
Seed eggNOG ortholog7719.XP_009860619.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Thrombospondin type 1 repeats
EggNOG OGs39NIT@33154,KOG3538@1,KOG3538@2759
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816805.1861987-CDS-M-pyrifera_M_contig89484:100..4961622816805.1861987-CDS-M-pyrifera_M_contig89484:100..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89484 101..496 +
1692278188.8996816-CDS-M-pyrifera_M_contig89484:100..4961692278188.8996816-CDS-M-pyrifera_M_contig89484:100..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89484 101..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89484.20744.1prot_M-pyrifera_M_contig89484.20744.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89484 101..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89484.20744.1

>prot_M-pyrifera_M_contig89484.20744.1 ID=prot_M-pyrifera_M_contig89484.20744.1|Name=mRNA_M-pyrifera_M_contig89484.20744.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
PEPVNCTVGEWGEWGKCDVACGKGHQTRTRNITREAANGGVCPYELEEVR
KCNNGPCPPNDDDDDDGVDVDCEMSPFTPTGECVPTVPGATCGPGKQTEE
RHVVTPASGNGTPCPTDMERQVNCSLGSCLPD
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mRNA from alignment at M-pyrifera_M_contig89484:101..496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89484.20744.1 ID=mRNA_M-pyrifera_M_contig89484.20744.1|Name=mRNA_M-pyrifera_M_contig89484.20744.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig89484:101..496+ (Macrocystis pyrifera P11B4 male)
CCAGAACCTGTAAATTGCACTGTAGGGGAATGGGGAGAATGGGGCAAGTG CGACGTGGCGTGTGGAAAAGGTCATCAAACAAGGACCAGAAATATTACGA GAGAAGCTGCAAATGGTGGCGTGTGCCCGTATGAATTGGAGGAAGTAAGA AAGTGCAACAATGGACCATGCCCACCGAATGATGATGATGATGATGATGG TGTTGATGTAGATTGTGAAATGTCACCGTTTACTCCGACTGGAGAATGTG TTCCAACAGTTCCAGGTGCAACTTGTGGACCAGGGAAGCAAACAGAAGAA CGACATGTTGTGACACCTGCAAGTGGTAATGGAACACCTTGTCCAACAGA TATGGAACGGCAAGTAAATTGCTCCCTTGGATCATGCCTACCAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89484:101..496+

>mRNA_M-pyrifera_M_contig89484.20744.1 ID=mRNA_M-pyrifera_M_contig89484.20744.1|Name=mRNA_M-pyrifera_M_contig89484.20744.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig89484:101..496+ (Macrocystis pyrifera P11B4 male)
CCAGAACCTGTAAATTGCACTGTAGGGGAATGGGGAGAATGGGGCAAGTG
CGACGTGGCGTGTGGAAAAGGTCATCAAACAAGGACCAGAAATATTACGA
GAGAAGCTGCAAATGGTGGCGTGTGCCCGTATGAATTGGAGGAAGTAAGA
AAGTGCAACAATGGACCATGCCCACCGAATGATGATGATGATGATGATGG
TGTTGATGTAGATTGTGAAATGTCACCGTTTACTCCGACTGGAGAATGTG
TTCCAACAGTTCCAGGTGCAACTTGTGGACCAGGGAAGCAAACAGAAGAA
CGACATGTTGTGACACCTGCAAGTGGTAATGGAACACCTTGTCCAACAGA
TATGGAACGGCAAGTAAATTGCTCCCTTGGATCATGCCTACCAGATCCAG
AACCTGTAAATTGCACTGTAGGGGAATGGGGAGAATGGGGCAAGTGCGAC
GTGGCGTGTGGAAAAGGTCATCAAACAAGGACCAGAAATATTACGAGAGA
AGCTGCAAATGGTGGCGTGTGCCCGTATGAATTGGAGGAAGTAAGAAAGT
GCAACAATGGACCATGCCCACCGAATGATGATGATGATGATGATGGTGTT
GATGTAGATTGTGAAATGTCACCGTTTACTCCGACTGGAGAATGTGTTCC
AACAGTTCCAGGTGCAACTTGTGGACCAGGGAAGCAAACAGAAGAACGAC
ATGTTGTGACACCTGCAAGTGGTAATGGAACACCTTGTCCAACAGATATG
GAACGGCAAGTAAATTGCTCCCTTGGATCATGCCTACCAGAT
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