mRNA_M-pyrifera_M_contig89464.20737.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89464.20737.1
Unique NamemRNA_M-pyrifera_M_contig89464.20737.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89464.20737.1 vs. uniprot
Match: A0A7Y5W6Z2_9BACT (Uncharacterized protein n=1 Tax=Pirellulales bacterium TaxID=2715253 RepID=A0A7Y5W6Z2_9BACT)

HSP 1 Score: 158 bits (399), Expect = 3.530e-43
Identity = 90/175 (51.43%), Postives = 112/175 (64.00%), Query Frame = 1
Query:    1 LNSTIAVLEREVAE-ARAAGDEESATQREVRLRMLYMLAHRNEDALRPVQGLDASQQDYWSQQLYALATYLDDQREPDAQRRAAAANEFLAEATDRLSELSELKVTGLAFCTEVVSFGVYKKFEEYKFQPGQQLLLYAEVDNFFSEPTPKGHHTALRSSYELIDSRGQIVEAHQF 522
            L  TI  LER VA   R++G+         RLRMLY++A R +DA RP+     S QD+WS++LY LA +LD +R  D  RRAA A   L EA  RL E S L V  LAF T++  FG YKKF EY+F PGQ++LLYAEV+NF SE TPKG+ T LR  Y++ DSRGQ V   +F
Sbjct:  226 LERTIRQLERTVASNPRSSGE----VAEHARLRMLYLMAGRRDDAFRPIPAASPSVQDFWSKELYGLAAWLDTERIEDPTRRAADAKLHLTEAIARLGETSPLVVRNLAFVTDIQGFGSYKKFSEYQFTPGQEVLLYAEVENFNSESTPKGYKTTLRFGYQIFDSRGQRVAEREF 396          
BLAST of mRNA_M-pyrifera_M_contig89464.20737.1 vs. uniprot
Match: A0A1G2ZCK9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium RBG_13_63_9 TaxID=1801965 RepID=A0A1G2ZCK9_9BACT)

HSP 1 Score: 155 bits (392), Expect = 5.180e-42
Identity = 84/174 (48.28%), Postives = 114/174 (65.52%), Query Frame = 1
Query:    1 LNSTIAVLEREVAEARAAGDEESATQREVRLRMLYMLAHRNEDALRPVQGLDASQQDYWSQQLYALATYLDDQREPDAQRRAAAANEFLAEATDRLSELSELKVTGLAFCTEVVSFGVYKKFEEYKFQPGQQLLLYAEVDNFFSEPTPKGHHTALRSSYELIDSRGQIVEAHQF 522
            L+S IA LE   A      DE +   +  +LRML +LA R + AL P+  +  + +++WS++LY L  +LD +R PDA RR+A A   L EA  RL E + L+V  LAFC+E+ S+G  K+FEEY F PGQ++LLYAE++NF SE T KG HT+LRSSY++ DSRGQ    H F
Sbjct:  239 LDSAIAALESGTANTPKTQDEIA---QHAQLRMLRLLAGRRDRALEPIPNVAPATEEFWSKELYGLDAWLDTKRTPDAMRRSAEAKRILGEALARLGETAPLEVRNLAFCSEIQSYGCIKEFEEYDFTPGQEVLLYAEIENFASESTAKGAHTSLRSSYQIYDSRGQRAADHDF 409          
BLAST of mRNA_M-pyrifera_M_contig89464.20737.1 vs. uniprot
Match: A0A257TFP5_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetia bacterium 21-64-5 TaxID=1970542 RepID=A0A257TFP5_9BACT)

HSP 1 Score: 151 bits (381), Expect = 7.560e-41
Identity = 77/142 (54.23%), Postives = 105/142 (73.94%), Query Frame = 1
Query:   82 EVRLRMLYMLAHRNEDALRPVQGLDASQQDYWSQQLYALATYLDDQREPDAQRRAAAANEFLAEATDRLSELSELKVTGLAFCTEVVSFGVYKKFEEYKFQPGQQLLLYAEVDNFFSEPTPKGHHTALRSSYELIDSRGQIV 507
            +V LR+L + A R +DALRP+ G+  +QQDYWS+QL+AL+ YLD QR  D  RRAA A   L+ A   L+E S L V  LAFCT+V S+GV K+FE  +F+PGQQ+LLYAEV+NF SE +P+G HT+L + Y+++DS+G+ V
Sbjct:  270 QVYLRLLDLAAGRRDDALRPIPGISPAQQDYWSKQLFALSAYLDAQRVTDPGRRAAEAGIHLSRAVASLAEQSPLVVRNLAFCTDVHSYGVLKRFEPAEFKPGQQILLYAEVENFKSEESPQGFHTSLEAHYQILDSQGRRV 411          
BLAST of mRNA_M-pyrifera_M_contig89464.20737.1 vs. uniprot
Match: A0A7C1FQ29_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C1FQ29_9BACT)

HSP 1 Score: 149 bits (377), Expect = 1.500e-39
Identity = 77/140 (55.00%), Postives = 100/140 (71.43%), Query Frame = 1
Query:   88 RLRMLYMLAHRNEDALRPVQGLDASQQDYWSQQLYALATYLDDQREPDAQRRAAAANEFLAEATDRLSELSELKVTGLAFCTEVVSFGVYKKFEEYKFQPGQQLLLYAEVDNFFSEPTPKGHHTALRSSYELIDSRGQIV 507
            RL +LY++A R EDALR + G  + + DYW +Q+YALA +LD+QREPD QRRAA     L EA  RL + + L V  LAFCTEV S+G Y++    +F P Q++LLYAEV+NF SE TP+G +T LRSSY++ DSRGQ V
Sbjct:  304 RLSLLYLVAGRREDALRMLPGGGSVEADYWRKQIYALAVWLDEQREPDGQRRAAETRLALDEAIARLGDAAPLVVRNLAFCTEVQSYGCYQRVASTEFAPEQEVLLYAEVENFTSEQTPRGFYTKLRSSYQIFDSRGQSV 443          
BLAST of mRNA_M-pyrifera_M_contig89464.20737.1 vs. uniprot
Match: A0A7C4IS44_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C4IS44_9BACT)

HSP 1 Score: 145 bits (367), Expect = 4.620e-38
Identity = 81/174 (46.55%), Postives = 112/174 (64.37%), Query Frame = 1
Query:    1 LNSTIAVLEREVAEARAAGDEESATQREVRLRMLYMLAHRNEDALRPVQGLDASQQDYWSQQLYALATYLDDQREPDAQRRAAAANEFLAEATDRLSELSELKVTGLAFCTEVVSFGVYKKFEEYKFQPGQQLLLYAEVDNFFSEPTPKGHHTALRSSYELIDSRGQIVEAHQF 522
            L + I  LER+ A A+    + +      RLR+LY+ A + + ALRP   L ASQQ++ S+ LY    +LD +R PDA  RAA A   L EA +RL++ + L V  LAFCTE++S+G +K F   +F P Q++LLY EV+NF SE T +G+HTALRSSY++ D+RGQ V  H F
Sbjct:  294 LAAAIRDLERQTASAQGTAADVAQL---ARLRLLYLAAGQRDAALRPAPNLPASQQEFLSKSLYGWDAWLDAERTPDAALRAAEAKRALEEAAERLADAAPLVVRNLAFCTEILSYGSHKPFRTNEFLPDQEVLLYVEVENFSSESTARGYHTALRSSYQIFDARGQRVAEHDF 464          
BLAST of mRNA_M-pyrifera_M_contig89464.20737.1 vs. uniprot
Match: A0A7V4HTS7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V4HTS7_9BACT)

HSP 1 Score: 143 bits (360), Expect = 1.100e-37
Identity = 78/173 (45.09%), Postives = 107/173 (61.85%), Query Frame = 1
Query:    1 LNSTIAVLEREVAEARAAGDEESATQREVRLRMLYMLAHRNEDALRPVQGLDASQQDYWSQQLYALATYLDDQREPDAQRRAAAANEFLAEATDRLSELSELKVTGLAFCTEVVSFGVYKKFEEYKFQPGQQLLLYAEVDNFFSEPTPKGHHTALRSSYELIDSRGQIVEAHQ 519
            L+  +  LE   AE R +    +   R+ RLR+LY+ + R EDA+RP+     + QD W+Q +Y LA ++D +R PDA RRAA A + L  A  RL EL+ L V   +F  EV S+G    FE+ +F PGQ++LLYAE++NF  E TPKG HT  R SYE+ D+RGQ V A +
Sbjct:  197 LDGAVKALE---AEVRQSPQTAAELARQARLRLLYLASGRREDAMRPIPAASPAMQDSWAQMIYGLAAWMDVERVPDAGRRAAEARQQLLAAAQRLGELAPLLVRNASFAKEVKSYGDITPFEKTEFSPGQEVLLYAELENFKCEETPKGFHTQFRGSYEIFDARGQRVTAQE 366          
BLAST of mRNA_M-pyrifera_M_contig89464.20737.1 vs. uniprot
Match: A0A7C7V8F8_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7V8F8_9PLAN)

HSP 1 Score: 142 bits (357), Expect = 1.720e-37
Identity = 72/146 (49.32%), Postives = 101/146 (69.18%), Query Frame = 1
Query:   85 VRLRMLYMLAHRNEDALRPVQGLDASQQDYWSQQLYALATYLDDQREPDAQRRAAAANEFLAEATDRLSELSELKVTGLAFCTEVVSFGVYKKFEEYKFQPGQQLLLYAEVDNFFSEPTPKGHHTALRSSYELIDSRGQIVEAHQF 522
            VRLRMLY+LA R ++AL PV G+D   Q +WS++L+ L   LD +   D   RAA A   LAEA   L E + L V  LAF T V ++G +  F++Y+F+P Q+++LYAE++NF S+ TP+G+HTAL+SSY++ DSRGQ V  H+F
Sbjct:  190 VRLRMLYLLAGRRDEALVPVPGIDQPLQAFWSRELFGLGALLDSRTIADPTVRAAEAQRHLAEALAHLGETAPLIVRNLAFVTRVDNYGTFTPFDKYEFRPEQRVILYAEIENFKSKETPQGYHTALKSSYQIFDSRGQRVADHEF 335          
BLAST of mRNA_M-pyrifera_M_contig89464.20737.1 vs. uniprot
Match: A0A7V3JJQ8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3JJQ8_9BACT)

HSP 1 Score: 141 bits (355), Expect = 4.670e-37
Identity = 79/173 (45.66%), Postives = 109/173 (63.01%), Query Frame = 1
Query:    1 LNSTIAVLEREVAEARAAGDEESATQREVRLRMLYMLAHRNEDALRPVQGLDASQQDYWSQQLYALATYLDDQREPDAQRRAAAANEFLAEATDRLSELSELKVTGLAFCTEVVSFGVYKKFEEYKFQPGQQLLLYAEVDNFFSEPTPKGHHTALRSSYELIDSRGQIVEAHQ 519
            L +  A LE E+ EA A+ D      +  RLR+L ++A + E+ALRP+ G+  + QD+W Q+LY LA +LD QR+ DA RRA  A + LA A   L  ++ L +  LAF T+V S+G YK F  Y+F P Q++LLY E++NF SE TPKG HT L +SY + D+R Q V   Q
Sbjct:  183 LAAAAASLEAELREAAASPD---LADKHARLRLLALVAGQREEALRPIPGVPPAVQDFWRQELYGLAVWLDSQRQDDATRRAGEARQQLANALVPLGWVAPLVLRNLAFITQVHSYGDYKPFARYEFTPEQEVLLYVEIENFASEETPKGFHTVLEASYRIFDNRNQQVAEKQ 352          
BLAST of mRNA_M-pyrifera_M_contig89464.20737.1 vs. uniprot
Match: A0A5C6CN04_9BACT (Uncharacterized protein n=2 Tax=Bythopirellula polymerisocia TaxID=2528003 RepID=A0A5C6CN04_9BACT)

HSP 1 Score: 142 bits (357), Expect = 5.780e-37
Identity = 77/174 (44.25%), Postives = 110/174 (63.22%), Query Frame = 1
Query:    1 LNSTIAVLEREVAEARAAGDEESATQREVRLRMLYMLAHRNEDALRPVQGLDASQQDYWSQQLYALATYLDDQREPDAQRRAAAANEFLAEATDRLSELSELKVTGLAFCTEVVSFGVYKKFEEYKFQPGQQLLLYAEVDNFFSEPTPKGHHTALRSSYELIDSRGQIVEAHQF 522
            L   I  +++EV     + DE    Q  +RLRML + A R ED+L P+ G  AS+QDYWS+QL+A++  LD +R+PD ++RAA A   L +A  RL EL+ L+V  L F   V  +G+Y+   + +F+PG Q+ LY EV+NF SE T KG  T+L +SYE++D  G+ VE  QF
Sbjct:  241 LTDAITAMQQEVKPLPGSTDE---LQEHMRLRMLLLTAGREEDSLEPIPGASASEQDYWSKQLFAISALLDSERQPDMKQRAAGALVHLDQARARLGELASLQVRNLTFADSVDGYGLYEPHADTRFKPGDQVTLYTEVENFRSESTKKGFRTSLATSYEVVDPHGRHVEGAQF 411          
BLAST of mRNA_M-pyrifera_M_contig89464.20737.1 vs. uniprot
Match: A0A5B9QRG5_9BACT (Uncharacterized protein n=1 Tax=Bythopirellula goksoeyrii TaxID=1400387 RepID=A0A5B9QRG5_9BACT)

HSP 1 Score: 140 bits (353), Expect = 1.480e-36
Identity = 71/149 (47.65%), Postives = 101/149 (67.79%), Query Frame = 1
Query:   76 QREVRLRMLYMLAHRNEDALRPVQGLDASQQDYWSQQLYALATYLDDQREPDAQRRAAAANEFLAEATDRLSELSELKVTGLAFCTEVVSFGVYKKFEEYKFQPGQQLLLYAEVDNFFSEPTPKGHHTALRSSYELIDSRGQIVEAHQF 522
            Q  +RLRML + A R ED+L P+ G  AS+QDYWS+QL+A++T LD +R+PD ++RAA A   L +A  RL EL+ L+V  L F  +V  +G+Y+   + KF PG Q+ LY EV+NF SE T  G  T+L +SYE++D +G+ V+  QF
Sbjct:  237 QEHMRLRMLLLTAGREEDSLEPIPGASASEQDYWSKQLFAISTILDSERQPDMKQRAAGALVHLDQARARLGELASLQVRNLTFADKVDGYGLYEPHTDTKFHPGDQVTLYTEVENFRSESTKNGFRTSLATSYEVLDPQGRRVDGAQF 385          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89464.20737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y5W6Z2_9BACT3.530e-4351.43Uncharacterized protein n=1 Tax=Pirellulales bacte... [more]
A0A1G2ZCK9_9BACT5.180e-4248.28Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A257TFP5_9BACT7.560e-4154.23Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A7C1FQ29_9BACT1.500e-3955.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C4IS44_9BACT4.620e-3846.55Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7V4HTS7_9BACT1.100e-3745.09Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C7V8F8_9PLAN1.720e-3749.32Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A7V3JJQ8_9BACT4.670e-3745.66Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5C6CN04_9BACT5.780e-3744.25Uncharacterized protein n=2 Tax=Bythopirellula pol... [more]
A0A5B9QRG5_9BACT1.480e-3647.65Uncharacterized protein n=1 Tax=Bythopirellula gok... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89464contigM-pyrifera_M_contig89464:281..802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.2
Seed ortholog evalue3.2e-23
Seed eggNOG ortholog1123242.JH636435_gene1432
Hectar predicted targeting categoryother localisation
EggNOG OGs2CGC8@1,2J0H4@203682,32S3M@2
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.8551233-CDS-M-pyrifera_M_contig89464:280..8021622816804.8551233-CDS-M-pyrifera_M_contig89464:280..802Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89464 281..802 +
1692278188.718669-CDS-M-pyrifera_M_contig89464:280..8021692278188.718669-CDS-M-pyrifera_M_contig89464:280..802Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89464 281..802 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89464.20737.1prot_M-pyrifera_M_contig89464.20737.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89464 281..802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89464.20737.1

>prot_M-pyrifera_M_contig89464.20737.1 ID=prot_M-pyrifera_M_contig89464.20737.1|Name=mRNA_M-pyrifera_M_contig89464.20737.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
LNSTIAVLEREVAEARAAGDEESATQREVRLRMLYMLAHRNEDALRPVQG
LDASQQDYWSQQLYALATYLDDQREPDAQRRAAAANEFLAEATDRLSELS
ELKVTGLAFCTEVVSFGVYKKFEEYKFQPGQQLLLYAEVDNFFSEPTPKG
HHTALRSSYELIDSRGQIVEAHQF
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mRNA from alignment at M-pyrifera_M_contig89464:281..802+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89464.20737.1 ID=mRNA_M-pyrifera_M_contig89464.20737.1|Name=mRNA_M-pyrifera_M_contig89464.20737.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig89464:281..802+ (Macrocystis pyrifera P11B4 male)
TTGAACTCCACCATCGCAGTGCTTGAACGCGAAGTGGCCGAAGCACGTGC GGCTGGCGATGAAGAATCCGCCACCCAAAGGGAAGTTCGCCTGCGCATGC TATACATGCTGGCCCATCGCAATGAAGATGCCTTGCGACCGGTGCAGGGT TTGGACGCCTCGCAGCAAGACTATTGGTCGCAGCAGCTATACGCCCTGGC CACCTACCTCGATGATCAACGCGAACCCGACGCACAACGGCGTGCTGCCG CAGCCAACGAATTCCTGGCCGAGGCCACTGATCGGCTCAGCGAGCTGAGT GAATTAAAAGTCACCGGGTTGGCCTTCTGCACCGAGGTGGTCAGCTTCGG CGTCTACAAGAAGTTCGAAGAGTACAAGTTCCAGCCGGGACAGCAACTCT TGCTCTACGCCGAGGTGGACAATTTCTTCAGCGAGCCAACCCCCAAGGGG CATCACACGGCACTGCGAAGCAGCTACGAATTGATCGATAGCCGCGGTCA GATTGTCGAAGCACATCAATTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89464:281..802+

>mRNA_M-pyrifera_M_contig89464.20737.1 ID=mRNA_M-pyrifera_M_contig89464.20737.1|Name=mRNA_M-pyrifera_M_contig89464.20737.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig89464:281..802+ (Macrocystis pyrifera P11B4 male)
TTGAACTCCACCATCGCAGTGCTTGAACGCGAAGTGGCCGAAGCACGTGC
GGCTGGCGATGAAGAATCCGCCACCCAAAGGGAAGTTCGCCTGCGCATGC
TATACATGCTGGCCCATCGCAATGAAGATGCCTTGCGACCGGTGCAGGGT
TTGGACGCCTCGCAGCAAGACTATTGGTCGCAGCAGCTATACGCCCTGGC
CACCTACCTCGATGATCAACGCGAACCCGACGCACAACGGCGTGCTGCCG
CAGCCAACGAATTCCTGGCCGAGGCCACTGATCGGCTCAGCGAGCTGAGT
GAATTAAAAGTCACCGGGTTGGCCTTCTGCACCGAGGTGGTCAGCTTCGG
CGTCTACAAGAAGTTCGAAGAGTACAAGTTCCAGCCGGGACAGCAACTCT
TGCTCTACGCCGAGGTGGACAATTTCTTCAGCGAGCCAACCCCCAAGGGG
CATCACACGGCACTGCGAAGCAGCTACGAATTGATCGATAGCCGCGGTCA
GATTGTCGAAGCACATCAATTCTTGAACTCCACCATCGCAGTGCTTGAAC
GCGAAGTGGCCGAAGCACGTGCGGCTGGCGATGAAGAATCCGCCACCCAA
AGGGAAGTTCGCCTGCGCATGCTATACATGCTGGCCCATCGCAATGAAGA
TGCCTTGCGACCGGTGCAGGGTTTGGACGCCTCGCAGCAAGACTATTGGT
CGCAGCAGCTATACGCCCTGGCCACCTACCTCGATGATCAACGCGAACCC
GACGCACAACGGCGTGCTGCCGCAGCCAACGAATTCCTGGCCGAGGCCAC
TGATCGGCTCAGCGAGCTGAGTGAATTAAAAGTCACCGGGTTGGCCTTCT
GCACCGAGGTGGTCAGCTTCGGCGTCTACAAGAAGTTCGAAGAGTACAAG
TTCCAGCCGGGACAGCAACTCTTGCTCTACGCCGAGGTGGACAATTTCTT
CAGCGAGCCAACCCCCAAGGGGCATCACACGGCACTGCGAAGCAGCTACG
AATTGATCGATAGCCGCGGTCAGATTGTCGAAGCACATCAATTC
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