mRNA_M-pyrifera_M_contig89458.20733.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89458.20733.1
Unique NamemRNA_M-pyrifera_M_contig89458.20733.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89458.20733.1 vs. uniprot
Match: A0A151Z3Z4_9MYCE (Rab GTPase n=2 Tax=Dictyosteliales TaxID=2058949 RepID=A0A151Z3Z4_9MYCE)

HSP 1 Score: 184 bits (466), Expect = 1.020e-56
Identity = 93/116 (80.17%), Postives = 102/116 (87.93%), Query Frame = 1 
Query:    1 AYYRGAMGILLVYDVTDDKSFGNIRNWIRNIEQHATESVNKMLIGNKCDMVDKKVVDTADGQKLADEYGIKFMETSAKNSINVDKAFITLAKDIKARLID-PNGPSGGADPGVVDP 345
            AYYRGAMGILLVYDVTD+KSFGNIRNWIRNIEQHAT+SVNKMLIGNKCDM +KKVVD+A G+ LADEYGIKF+ETSAKNSINVD+AFITLAKDIK R+ID PN P    D   + P
Sbjct:   87 AYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSARGKSLADEYGIKFLETSAKNSINVDEAFITLAKDIKKRMIDTPNEPPPTRDTTSITP 202
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BLAST of mRNA_M-pyrifera_M_contig89458.20733.1 vs. uniprot
Match: F4PVW1_CAVFA (Rab GTPase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PVW1_CAVFA)

HSP 1 Score: 181 bits (458), Expect = 1.580e-55
Identity = 92/121 (76.03%), Postives = 105/121 (86.78%), Query Frame = 1 
Query:    1 AYYRGAMGILLVYDVTDDKSFGNIRNWIRNIEQHATESVNKMLIGNKCDMVDKKVVDTADGQKLADEYGIKFMETSAKNSINVDKAFITLAKDIKARLID-PNGPSGGADPGVVDPTAPPK 360
            AYYRGAMGILLVYDVTD+KSFGNIRNWIRNIEQHATESVNKMLIGNKCD+ +KKVVD++ G+ LADEYGIKF+ETSAKNSINV++AFI+LAKDIK R+ID PN P+       +  TAP K
Sbjct:   86 AYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATESVNKMLIGNKCDLPEKKVVDSSRGKALADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNEPNNQTGNAQLSDTAPAK 206
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BLAST of mRNA_M-pyrifera_M_contig89458.20733.1 vs. uniprot
Match: RAB8A_DICDI (Ras-related protein Rab-8A n=2 Tax=Dictyostelium TaxID=5782 RepID=RAB8A_DICDI)

HSP 1 Score: 178 bits (451), Expect = 1.610e-54
Identity = 89/113 (78.76%), Postives = 100/113 (88.50%), Query Frame = 1 
Query:    1 AYYRGAMGILLVYDVTDDKSFGNIRNWIRNIEQHATESVNKMLIGNKCDMVDKKVVDTADGQKLADEYGIKFMETSAKNSINVDKAFITLAKDIKARLID-PNGPSGGADPGV 336
            AYYRGAMGILLVYDVTD+KSFGNIRNWIRNIEQHAT+SVNKMLIGNKCDM +KKVVD++ G+ LADEYGIKF+ETSAKNSINV++AFI+LAKDIK R+ID PN       PG 
Sbjct:   83 AYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNEQPQVVQPGT 195
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BLAST of mRNA_M-pyrifera_M_contig89458.20733.1 vs. uniprot
Match: UPI000644CB81 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644CB81)

HSP 1 Score: 176 bits (445), Expect = 1.720e-53
Identity = 85/100 (85.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    1 AYYRGAMGILLVYDVTDDKSFGNIRNWIRNIEQHATESVNKMLIGNKCDMVDKKVVDTADGQKLADEYGIKFMETSAKNSINVDKAFITLAKDIKARLID 300
            AYYRGAMGILLVYDVTD+KSFGNIRNWIRNIEQHATESVNKMLIGNKCD+ +KKVVD++ G+ LADE+GIKF+ETSAKNSINV++AFITLAKDIK R+ID
Sbjct:   87 AYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATESVNKMLIGNKCDLPEKKVVDSSRGKALADEHGIKFLETSAKNSINVEEAFITLAKDIKKRMID 186
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BLAST of mRNA_M-pyrifera_M_contig89458.20733.1 vs. uniprot
Match: RAB8B_DICDI (Ras-related protein Rab-8B n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=RAB8B_DICDI)

HSP 1 Score: 174 bits (441), Expect = 4.550e-53
Identity = 85/105 (80.95%), Postives = 98/105 (93.33%), Query Frame = 1 
Query:    1 AYYRGAMGILLVYDVTDDKSFGNIRNWIRNIEQHATESVNKMLIGNKCDMVDKKVVDTADGQKLADEYGIKFMETSAKNSINVDKAFITLAKDIKARLID-PNGP 312
            AYYRGAMGILLVYDVTD+KSFG+IRNWIRNIEQHA++SVNKMLIGNKCDM +KKVVD++ G+ LADEYGIKF+ETSAKNS+NV++AFI LAKDIK R+ID PN P
Sbjct:   83 AYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTPNDP 187
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BLAST of mRNA_M-pyrifera_M_contig89458.20733.1 vs. uniprot
Match: D3BL86_POLPP (Rab GTPase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BL86_POLPP)

HSP 1 Score: 174 bits (441), Expect = 6.370e-53
Identity = 84/100 (84.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    1 AYYRGAMGILLVYDVTDDKSFGNIRNWIRNIEQHATESVNKMLIGNKCDMVDKKVVDTADGQKLADEYGIKFMETSAKNSINVDKAFITLAKDIKARLID 300
            AYYRGAMGILLVYDVTD+KSFGNIRNWIRNIEQHATESVNKMLIGNKCD+ +KKVVD++ G+ LADE+GIKF+ETSAKNSINV++AFI+LAKDIK R+ID
Sbjct:   86 AYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATESVNKMLIGNKCDLPEKKVVDSSRGKALADEHGIKFLETSAKNSINVEEAFISLAKDIKKRIID 185
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BLAST of mRNA_M-pyrifera_M_contig89458.20733.1 vs. uniprot
Match: UPI000644E6FC (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E6FC)

HSP 1 Score: 174 bits (441), Expect = 6.370e-53
Identity = 85/100 (85.00%), Postives = 94/100 (94.00%), Query Frame = 1 
Query:    1 AYYRGAMGILLVYDVTDDKSFGNIRNWIRNIEQHATESVNKMLIGNKCDMVDKKVVDTADGQKLADEYGIKFMETSAKNSINVDKAFITLAKDIKARLID 300
            AYYRGAMGILLVYDVTD+KSFGNIRNWIRNIEQHATESV KMLIGNKCD+ +KKVVDTA G+ LADE+GIKF+ETSAKNSINV++AFITLAKDIK  +ID
Sbjct:   87 AYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATESVKKMLIGNKCDLPEKKVVDTARGKALADEHGIKFLETSAKNSINVEEAFITLAKDIKKNMID 186
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BLAST of mRNA_M-pyrifera_M_contig89458.20733.1 vs. uniprot
Match: A0A6U3B2I0_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A6U3B2I0_9EUKA)

HSP 1 Score: 166 bits (421), Expect = 9.810e-50
Identity = 85/112 (75.89%), Postives = 98/112 (87.50%), Query Frame = 1 
Query:    1 AYYRGAMGILLVYDVTDDKSFGNIRNWIRNIEQHATESVNKMLIGNKCDMVDKKVVDTADGQKLADEYGIKFMETSAKNSINVDKAFITLAKDIKARLIDPNGPSGGADPGV 336
            AYYRGAMGILLVYDVT+++SF NIRNWIRNIE+HAT++V+K+LIGNKCDMVDKKV+D   GQ LA EYGIKF+ETSAKN+INV++AFITLAK IK RLID  GP G   PGV
Sbjct:   85 AYYRGAMGILLVYDVTEERSFSNIRNWIRNIEKHATDNVDKILIGNKCDMVDKKVIDAERGQALAKEYGIKFVETSAKNNINVEEAFITLAKAIKERLID--GPKG---PGV 191
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BLAST of mRNA_M-pyrifera_M_contig89458.20733.1 vs. uniprot
Match: A0A1Y2HP65_9FUNG (Ras family-domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HP65_9FUNG)

HSP 1 Score: 165 bits (417), Expect = 2.460e-49
Identity = 77/109 (70.64%), Postives = 94/109 (86.24%), Query Frame = 1 
Query:    1 AYYRGAMGILLVYDVTDDKSFGNIRNWIRNIEQHATESVNKMLIGNKCDMVDKKVVDTADGQKLADEYGIKFMETSAKNSINVDKAFITLAKDIKARLIDPNGPSGGAD 327
            AYYRGAMGILL+YDVTD++SF NIRNWIRNIEQHA+  VNK+L+GNKCD+ DKKV+    GQ+LADE+GIKF+ETSAK++I V++AF +LAKDIK RLID  G +GG D
Sbjct:   79 AYYRGAMGILLIYDVTDERSFNNIRNWIRNIEQHASAGVNKILVGNKCDVADKKVISKEQGQELADEFGIKFIETSAKSNIGVEEAFFSLAKDIKKRLIDSQGAAGGDD 187
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BLAST of mRNA_M-pyrifera_M_contig89458.20733.1 vs. uniprot
Match: A0A2P6N1S6_9EUKA (Rab GTPase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N1S6_9EUKA)

HSP 1 Score: 164 bits (416), Expect = 3.290e-49
Identity = 78/104 (75.00%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:    1 AYYRGAMGILLVYDVTDDKSFGNIRNWIRNIEQHATESVNKMLIGNKCDMVDKKVVDTADGQKLADEYGIKFMETSAKNSINVDKAFITLAKDIKARLIDPNGP 312
            AYYRGAMGILLVYDVTDDKSF N+ NWIRNIEQHA+E+VNK+LIGNKCD+VDKKV+DTA G+ +ADEY I+F+ETSAKNSINV++AFI+LA++IK R++D   P
Sbjct:   83 AYYRGAMGILLVYDVTDDKSFANMGNWIRNIEQHASENVNKILIGNKCDLVDKKVIDTARGKAMADEYKIRFLETSAKNSINVEEAFISLAREIKHRVMDTEKP 186
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89458.20733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151Z3Z4_9MYCE1.020e-5680.17Rab GTPase n=2 Tax=Dictyosteliales TaxID=2058949 R... [more]
F4PVW1_CAVFA1.580e-5576.03Rab GTPase n=1 Tax=Cavenderia fasciculata (strain ... [more]
RAB8A_DICDI1.610e-5478.76Ras-related protein Rab-8A n=2 Tax=Dictyostelium T... [more]
UPI000644CB811.720e-5385.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
RAB8B_DICDI4.550e-5380.95Ras-related protein Rab-8B n=1 Tax=Dictyostelium d... [more]
D3BL86_POLPP6.370e-5384.00Rab GTPase n=1 Tax=Polysphondylium pallidum (strai... [more]
UPI000644E6FC6.370e-5385.00hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A6U3B2I0_9EUKA9.810e-5075.89Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A1Y2HP65_9FUNG2.460e-4970.64Ras family-domain-containing protein n=1 Tax=Caten... [more]
A0A2P6N1S6_9EUKA3.290e-4975.00Rab GTPase n=1 Tax=Planoprotostelium fungivorum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89458contigM-pyrifera_M_contig89458:255..698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue2.1e-39
Seed eggNOG ortholog5786.XP_003287584.1
Preferred nameypt2
KEGG koko:K07874,ko:K07901,ko:K18158
KEGG Pathwayko04144,ko04152,ko04530,ko04972,ko05134,map04144,map04152,map04530,map04972,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000331,GO:0001882,GO:0001883,GO:0002790,GO:0002791,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005815,GO:0005816,GO:0005856,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006892,GO:0006893,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007010,GO:0007033,GO:0007155,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0010646,GO:0012505,GO:0012506,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016339,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0017157,GO:0019001,GO:0022406,GO:0022610,GO:0023052,GO:0030029,GO:0030036,GO:0030100,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031156,GO:0031157,GO:0031164,GO:0031410,GO:0031503,GO:0031982,GO:0032101,GO:0032104,GO:0032107,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032794,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033298,GO:0034613,GO:0034629,GO:0035639,GO:0035974,GO:0036094,GO:0042763,GO:0042764,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043900,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045055,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0048583,GO:0050708,GO:0050789,GO:0050793,GO:0050794,GO:0051046,GO:0051049,GO:0051128,GO:0051179,GO:0051223,GO:0051234,GO:0051600,GO:0051601,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060176,GO:0060627,GO:0061024,GO:0061025,GO:0065007,GO:0065008,GO:0070177,GO:0070201,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080134,GO:0080135,GO:0090087,GO:0090174,GO:0090522,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098609,GO:0098742,GO:0098805,GO:0098876,GO:0099022,GO:0099503,GO:0140025,GO:0140029,GO:0140056,GO:1901265,GO:1901363,GO:1903530,GO:1990778
EggNOG free text desc.Rab subfamily of small GTPases
EggNOG OGs3X8GT@554915,KOG0078@1,KOG0078@2759
COG Functional cat.U
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03036,ko04031,ko04131,ko04147
Exons2
Model size360
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89458.20733.1prot_M-pyrifera_M_contig89458.20733.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89458 255..680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.6648157-CDS-M-pyrifera_M_contig89458:254..4521622816804.6648157-CDS-M-pyrifera_M_contig89458:254..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89458 255..452 -
1692278188.6132107-CDS-M-pyrifera_M_contig89458:254..4521692278188.6132107-CDS-M-pyrifera_M_contig89458:254..452Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89458 255..452 -
1622816804.6768372-CDS-M-pyrifera_M_contig89458:536..6801622816804.6768372-CDS-M-pyrifera_M_contig89458:536..680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89458 537..680 -
1692278188.6276803-CDS-M-pyrifera_M_contig89458:536..6801692278188.6276803-CDS-M-pyrifera_M_contig89458:536..680Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89458 537..680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.6896622-UTR-M-pyrifera_M_contig89458:680..6981622816804.6896622-UTR-M-pyrifera_M_contig89458:680..698Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89458 681..698 -
1692278188.6404889-UTR-M-pyrifera_M_contig89458:680..6981692278188.6404889-UTR-M-pyrifera_M_contig89458:680..698Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig89458 681..698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89458.20733.1

>prot_M-pyrifera_M_contig89458.20733.1 ID=prot_M-pyrifera_M_contig89458.20733.1|Name=mRNA_M-pyrifera_M_contig89458.20733.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
MGILLVYDVTDDKSFGNIRNWIRNIEQHATESVNKMLIGNKCDMVDKKVV
DTADGQKLADEYGIKFMETSAKNSINVDKAFITLAKDIKARLIDPNGPSG
GADPGVVDPTAPPK
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mRNA from alignment at M-pyrifera_M_contig89458:255..698-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89458.20733.1 ID=mRNA_M-pyrifera_M_contig89458.20733.1|Name=mRNA_M-pyrifera_M_contig89458.20733.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig89458:255..698- (Macrocystis pyrifera P11B4 male)
GCCTACTACCGCGGCGCGATGGGCATCCTCTTGGTGTACGACGTGACTGA
CGACAAGTCCTTCGGAAACATCCGCAACTGGATCAGGAACATCGAGCAGC
ATGCAACCGAGTCTGTGAACAAGATGCTGATCGGCAACAAGTGCGACATG
GTCGACAAGAAGGTACAGCCACGCCCTCGCTTGCACATCGGCGGCTGCAT
CGGAGATCGCCGTCGCAGTGTCTTGAGCACCGTCTAACCTGGGCAGGTGG
TGGACACAGCCGATGGACAGAAGCTGGCCGACGAGTACGGCATCAAGTTC
ATGGAGACGAGCGCCAAGAACAGCATCAACGTCGACAAGGCGTTCATCAC
TCTCGCCAAGGACATCAAGGCGCGCCTGATAGACCCCAATGGCCCTTCGG
GCGGCGCTGACCCTGGTGTGGTGGACCCCACGGCGCCACCGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89458:255..698-

>mRNA_M-pyrifera_M_contig89458.20733.1 ID=mRNA_M-pyrifera_M_contig89458.20733.1|Name=mRNA_M-pyrifera_M_contig89458.20733.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig89458:255..698- (Macrocystis pyrifera P11B4 male)
ATGGGCATCCTCTTGGTGTACGACGTGACTGACGACAAGTCCTTCGGAAA
CATCCGCAACTGGATCAGGAACATCGAGCAGCATGCAACCGAGTCTGTGA
ACAAGATGCTGATCGGCAACAAGTGCGACATGGTCGACAAGAAGATGGGC
ATCCTCTTGGTGTACGACGTGACTGACGACAAGTCCTTCGGAAACATCCG
CAACTGGATCAGGAACATCGAGCAGCATGCAACCGAGTCTGTGAACAAGA
TGCTGATCGGCAACAAGTGCGACATGGTCGACAAGAAGGTGGTGGACACA
GCCGATGGACAGAAGCTGGCCGACGAGTACGGCATCAAGTTCATGGAGAC
GAGCGCCAAGAACAGCATCAACGTCGACAAGGCGTTCATCACTCTCGCCA
AGGACATCAAGGCGCGCCTGATAGACCCCAATGGCCCTTCGGGCGGCGCT
GACCCTGGTGTGGTGGACCCCACGGCGCCACCGAAGGTGGTGGACACAGC
CGATGGACAGAAGCTGGCCGACGAGTACGGCATCAAGTTCATGGAGACGA
GCGCCAAGAACAGCATCAACGTCGACAAGGCGTTCATCACTCTCGCCAAG
GACATCAAGGCGCGCCTGATAGACCCCAATGGCCCTTCGGGCGGCGCTGA
CCCTGGTGTGGTGGACCCCACGGCGCCACCGAAG
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