mRNA_M-pyrifera_M_contig89455.20731.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89455.20731.1
Unique NamemRNA_M-pyrifera_M_contig89455.20731.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig89455.20731.1 vs. uniprot
Match: A0A1J3CAC1_NOCCA (40S ribosomal protein S10-1 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CAC1_NOCCA)

HSP 1 Score: 130 bits (327), Expect = 2.160e-36
Identity = 65/103 (63.11%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:    1 MIITKKDRVAICKYLFEEGVMVCKKDYNVNHPKVEPTVKNLHVCKLMQSFKSKGYVNETFSWQYYYYYLTDEGIQFLRDFLHLGEEVVPNTLKKPRVASRGPG 309
            MII KKDRV I KYLF+EGV+V KKD+      +  T +NL+V KLMQS+KS+GYV ETFSWQ+YY+YLT+EGI+FLR++LHL E+VVP TL KP+  +R PG
Sbjct:    4 MIIPKKDRVLISKYLFDEGVLVAKKDFEAPKHSILAT-RNLYVIKLMQSYKSRGYVRETFSWQWYYWYLTNEGIEFLREYLHLTEDVVPATLNKPKRPTRLPG 105
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BLAST of mRNA_M-pyrifera_M_contig89455.20731.1 vs. uniprot
Match: A0A1Z5L025_ORNMO (Glycogen synthase (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5L025_ORNMO)

HSP 1 Score: 127 bits (320), Expect = 5.740e-36
Identity = 64/103 (62.14%), Postives = 82/103 (79.61%), Query Frame = 1 
Query:    1 MIITKKDRVAICKYLFEEGVMVCKKDYNV-NHPKVEPTVKNLHVCKLMQSFKSKGYVNETFSWQYYYYYLTDEGIQFLRDFLHLGEEVVPNTLKKPRVASRGP 306
            M++ KKDRVAI +YLF+EGVMV KKD++   HP++E TVKNLHV K +QS KS+GYV E F+W++YY+YLT+EGIQ+LRDFLHL  E+VP TLKK    +  P
Sbjct:    1 MLMPKKDRVAIYEYLFKEGVMVAKKDFHAPKHPELE-TVKNLHVIKALQSLKSRGYVKEQFAWRHYYWYLTNEGIQYLRDFLHLPPEIVPATLKKQSRRTEAP 102
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BLAST of mRNA_M-pyrifera_M_contig89455.20731.1 vs. uniprot
Match: K3XMF8_SETIT (S10_plectin domain-containing protein n=11 Tax=Poaceae TaxID=4479 RepID=K3XMF8_SETIT)

HSP 1 Score: 129 bits (323), Expect = 1.010e-35
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    1 MIITKKDRVAICKYLFEEGVMVCKKDYNV-NHPKVEPTVKNLHVCKLMQSFKSKGYVNETFSWQYYYYYLTDEGIQFLRDFLHLGEEVVPNTLKKP-RVASRGPGMG 315
            MII+KK+R  ICKYLF EGV+  KKDYN+  HPK++  V NL V KLMQSFKSK YV ETFSWQYYY+YLT++GI++LR FL+L  EVVPNTLKK  +  SR  G G
Sbjct:    1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKLD--VPNLEVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEYLRTFLNLPSEVVPNTLKKSSKPPSRPFGSG 105
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BLAST of mRNA_M-pyrifera_M_contig89455.20731.1 vs. uniprot
Match: C5XIN8_SORBI (S10_plectin domain-containing protein n=4 Tax=Panicoideae TaxID=147369 RepID=C5XIN8_SORBI)

HSP 1 Score: 127 bits (319), Expect = 4.070e-35
Identity = 70/107 (65.42%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    1 MIITKKDRVAICKYLFEEGVMVCKKDYNV-NHPKVEPTVKNLHVCKLMQSFKSKGYVNETFSWQYYYYYLTDEGIQFLRDFLHLGEEVVPNTLKKP-RVASRGPGMG 315
            MII+KK+R  ICKYLF EGV+  KKDYN+  HPK++  V NL V KLMQSFKSK YV ETFSWQYYY+YLT++GI+ LR FL+L  EVVPNTLKK  +  SR  G G
Sbjct:    1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKLD--VPNLEVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRTFLNLPSEVVPNTLKKSSKPPSRPFGSG 105
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BLAST of mRNA_M-pyrifera_M_contig89455.20731.1 vs. uniprot
Match: I1I9J3_BRADI (S10_plectin domain-containing protein n=6 Tax=Pooideae TaxID=147368 RepID=I1I9J3_BRADI)

HSP 1 Score: 127 bits (319), Expect = 4.550e-35
Identity = 68/107 (63.55%), Postives = 84/107 (78.50%), Query Frame = 1 
Query:    1 MIITKKDRVAICKYLFEEGVMVCKKDYNV-NHPKVEPTVKNLHVCKLMQSFKSKGYVNETFSWQYYYYYLTDEGIQFLRDFLHLGEEVVPNTLKKP-RVASRGPGMG 315
            MII+KK+R  ICKYLF+EGV+  KKDYN+  HP+V+ +  NL V KLMQSFKSK YV ETFSWQ+YY+YLT++GI+FLR FL+L  E+VPNTLKK  +  SR  G G
Sbjct:    1 MIISKKNRREICKYLFQEGVLYAKKDYNLAKHPQVDAS--NLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPNTLKKSAKPPSRPFGSG 105
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BLAST of mRNA_M-pyrifera_M_contig89455.20731.1 vs. uniprot
Match: A0A453BZE2_AEGTS (S10_plectin domain-containing protein n=3 Tax=BOP clade TaxID=359160 RepID=A0A453BZE2_AEGTS)

HSP 1 Score: 126 bits (316), Expect = 6.350e-35
Identity = 66/104 (63.46%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:    1 MIITKKDRVAICKYLFEEGVMVCKKDYNV-NHPKVEPTVKNLHVCKLMQSFKSKGYVNETFSWQYYYYYLTDEGIQFLRDFLHLGEEVVPNTLKKPRVASRGPG 309
            MII+KK+R  ICKYLF+EGV+  KKDYN+  HP+++  V NL V KLMQSFKSK YV ETFSWQ+YY+YLT++GI+FLR+FL+L  E+VP TLKK   ++R PG
Sbjct:    1 MIISKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID--VPNLQVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRNFLNLPSEIVPATLKK---SARPPG 99
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BLAST of mRNA_M-pyrifera_M_contig89455.20731.1 vs. uniprot
Match: A0A293LRD4_ORNER (Endonuclease-reverse transcriptase (Fragment) n=2 Tax=Ornithodoros TaxID=6937 RepID=A0A293LRD4_ORNER)

HSP 1 Score: 125 bits (314), Expect = 1.390e-34
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:    1 MIITKKDRVAICKYLFEEGVMVCKKDYNV-NHPKVEPTVKNLHVCKLMQSFKSKGYVNETFSWQYYYYYLTDEGIQFLRDFLHLGEEVVPNTLKKP---RVASRGPGM 312
            M++ KKDRVAI +YLF+EGVMV KKD++   HP++E TV NLHV K +QS KS+GYV E F+W++YY+YLT+EGIQ+LRDFLHL  E+VP TLKK       SR P M
Sbjct:    1 MLMPKKDRVAIYEYLFKEGVMVAKKDFHAPKHPELE-TVPNLHVIKALQSLKSRGYVKEQFAWRHYYWYLTNEGIQYLRDFLHLPPEIVPATLKKQSRQEAPSRRPRM 107
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BLAST of mRNA_M-pyrifera_M_contig89455.20731.1 vs. uniprot
Match: W5AUH7_WHEAT (S10_plectin domain-containing protein n=8 Tax=Triticeae TaxID=147389 RepID=W5AUH7_WHEAT)

HSP 1 Score: 126 bits (316), Expect = 1.490e-34
Identity = 66/104 (63.46%), Postives = 84/104 (80.77%), Query Frame = 1 
Query:    1 MIITKKDRVAICKYLFEEGVMVCKKDYNV-NHPKVEPTVKNLHVCKLMQSFKSKGYVNETFSWQYYYYYLTDEGIQFLRDFLHLGEEVVPNTLKKPRVASRGPG 309
            MII+KK+R  ICKYLF+EGV+  KKDYN+  HP+++  V NL V KLMQSFKSK YV ETFSWQ+YY+YLT++GI+FLR+FL+L  E+VP TLKK   ++R PG
Sbjct:    1 MIISKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID--VPNLQVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRNFLNLPSEIVPATLKK---SARPPG 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig89455.20731.1 vs. uniprot
Match: A0A453GT76_AEGTS (S10_plectin domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453GT76_AEGTS)

HSP 1 Score: 125 bits (314), Expect = 2.020e-34
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 1 
Query:    4 IITKKDRVAICKYLFEEGVMVCKKDYNV-NHPKVEPTVKNLHVCKLMQSFKSKGYVNETFSWQYYYYYLTDEGIQFLRDFLHLGEEVVPNTLKKP-RVASRGPGMG 315
            II+KK+R  ICKYLF+EGV+  KKDYN+  HP+V+ +  NL V KLMQSFKSK YV ETFSWQ+YY+YLT++GI+FLR FL+L  E+VPNTLKK  +  SR  G G
Sbjct:    2 IISKKNRREICKYLFQEGVLYAKKDYNLAKHPQVDAS--NLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRTFLNLPSEIVPNTLKKSAKPPSRPFGSG 105
[Close]
BLAST of mRNA_M-pyrifera_M_contig89455.20731.1 vs. uniprot
Match: A0A5J9VPC8_9POAL (S10_plectin domain-containing protein n=2 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9VPC8_9POAL)

HSP 1 Score: 125 bits (315), Expect = 2.360e-34
Identity = 69/107 (64.49%), Postives = 82/107 (76.64%), Query Frame = 1 
Query:    1 MIITKKDRVAICKYLFEEGVMVCKKDYNV-NHPKVEPTVKNLHVCKLMQSFKSKGYVNETFSWQYYYYYLTDEGIQFLRDFLHLGEEVVPNTLKKP-RVASRGPGMG 315
            MII+KK+R  ICKYLF EGV+  KKDYN+  HPK++  V NL V KLMQSFKSK YV ETFSWQ+YY+YLT++GI+ LR FL+L  EVVPNTLKK  +  SR  G G
Sbjct:    1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKLD--VPNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEHLRSFLNLPSEVVPNTLKKSNKPPSRPFGSG 105
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89455.20731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J3CAC1_NOCCA2.160e-3663.1140S ribosomal protein S10-1 (Fragment) n=2 Tax=Noc... [more]
A0A1Z5L025_ORNMO5.740e-3662.14Glycogen synthase (Fragment) n=1 Tax=Ornithodoros ... [more]
K3XMF8_SETIT1.010e-3565.42S10_plectin domain-containing protein n=11 Tax=Poa... [more]
C5XIN8_SORBI4.070e-3565.42S10_plectin domain-containing protein n=4 Tax=Pani... [more]
I1I9J3_BRADI4.550e-3563.55S10_plectin domain-containing protein n=6 Tax=Pooi... [more]
A0A453BZE2_AEGTS6.350e-3563.46S10_plectin domain-containing protein n=3 Tax=BOP ... [more]
A0A293LRD4_ORNER1.390e-3461.11Endonuclease-reverse transcriptase (Fragment) n=2 ... [more]
W5AUH7_WHEAT1.490e-3463.46S10_plectin domain-containing protein n=8 Tax=Trit... [more]
A0A453GT76_AEGTS2.020e-3463.21S10_plectin domain-containing protein n=1 Tax=Aegi... [more]
A0A5J9VPC8_9POAL2.360e-3464.49S10_plectin domain-containing protein n=2 Tax=Erag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89455contigM-pyrifera_M_contig89455:9..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score130.6
Seed ortholog evalue4.4e-28
Seed eggNOG ortholog4555.Si003081m
KEGG koko:K02947,ko:K09422
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0001763,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006996,GO:0007275,GO:0008150,GO:0009507,GO:0009536,GO:0009653,GO:0009888,GO:0009933,GO:0009987,GO:0010014,GO:0010016,GO:0010223,GO:0010252,GO:0010346,GO:0015935,GO:0016020,GO:0016043,GO:0022603,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030312,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0042592,GO:0042788,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0048367,GO:0048507,GO:0048532,GO:0048646,GO:0048731,GO:0048831,GO:0048856,GO:0048878,GO:0050789,GO:0050793,GO:0051239,GO:0060688,GO:0065003,GO:0065007,GO:0065008,GO:0070925,GO:0071826,GO:0071840,GO:0071944,GO:0090506,GO:0097159,GO:1900618,GO:1901363,GO:1905393,GO:1905428,GO:1990904,GO:2000026,GO:2000032
EggNOG free text desc.Plectin/S10 domain
EggNOG OGs37IV7@33090,3GAKP@35493,3I2NS@38820,3M2C4@4447,COG5045@1,KOG3344@2759
COG Functional cat.J
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03000,ko03011
Exons2
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.5834434-CDS-M-pyrifera_M_contig89455:8..2741622816804.5834434-CDS-M-pyrifera_M_contig89455:8..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89455 9..274 -
1692278188.5795367-CDS-M-pyrifera_M_contig89455:8..2741692278188.5795367-CDS-M-pyrifera_M_contig89455:8..274Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89455 9..274 -
1622816804.5953434-CDS-M-pyrifera_M_contig89455:446..4981622816804.5953434-CDS-M-pyrifera_M_contig89455:446..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89455 447..498 -
1692278188.5925515-CDS-M-pyrifera_M_contig89455:446..4981692278188.5925515-CDS-M-pyrifera_M_contig89455:446..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89455 447..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89455.20731.1prot_M-pyrifera_M_contig89455.20731.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89455 9..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89455.20731.1

>prot_M-pyrifera_M_contig89455.20731.1 ID=prot_M-pyrifera_M_contig89455.20731.1|Name=mRNA_M-pyrifera_M_contig89455.20731.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MIITKKDRVAICKYLFEEGVMVCKKDYNVNHPKVEPTVKNLHVCKLMQSF
KSKGYVNETFSWQYYYYYLTDEGIQFLRDFLHLGEEVVPNTLKKPRVASR
GPGMGR
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mRNA from alignment at M-pyrifera_M_contig89455:9..498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89455.20731.1 ID=mRNA_M-pyrifera_M_contig89455.20731.1|Name=mRNA_M-pyrifera_M_contig89455.20731.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=490bp|location=Sequence derived from alignment at M-pyrifera_M_contig89455:9..498- (Macrocystis pyrifera P11B4 male)
ATGATCATCACTAAGAAGGACCGAGTTGCCATCTGCAAGTACCTCTTCGA
GGGTAGGTCCCAGGCAGGCGTAGGAGGCGATTTGGGCGCACTTGGATGGC
GATGATGCCAAGCGCTGCGAGGGGGCCTGCGGGCGGCTAGGAGAGGCGTG
CTAGGCATACAGGAGGCGCTGCTGCTGCTATGTTTCTGGAAGATAGGCTG
ACGTGGCGCCTTGTGCGCTTGCAGAGGGTGTTATGGTCTGCAAGAAGGAC
TACAACGTCAACCACCCCAAGGTCGAGCCCACCGTGAAGAACCTCCACGT
CTGCAAGCTCATGCAGTCGTTCAAGTCCAAGGGCTACGTGAACGAGACCT
TCTCGTGGCAGTACTACTACTACTACCTCACCGACGAGGGCATCCAGTTC
CTCCGCGACTTCCTTCACCTCGGTGAGGAGGTCGTGCCCAACACTCTGAA
GAAGCCGCGTGTGGCCTCCAGGGGACCCGGCATGGGCCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89455:9..498-

>mRNA_M-pyrifera_M_contig89455.20731.1 ID=mRNA_M-pyrifera_M_contig89455.20731.1|Name=mRNA_M-pyrifera_M_contig89455.20731.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig89455:9..498- (Macrocystis pyrifera P11B4 male)
ATGATCATCACTAAGAAGGACCGAGTTGCCATCTGCAAGTACCTCTTCGA
GGATGATCATCACTAAGAAGGACCGAGTTGCCATCTGCAAGTACCTCTTC
GAGGAGGGTGTTATGGTCTGCAAGAAGGACTACAACGTCAACCACCCCAA
GGTCGAGCCCACCGTGAAGAACCTCCACGTCTGCAAGCTCATGCAGTCGT
TCAAGTCCAAGGGCTACGTGAACGAGACCTTCTCGTGGCAGTACTACTAC
TACTACCTCACCGACGAGGGCATCCAGTTCCTCCGCGACTTCCTTCACCT
CGGTGAGGAGGTCGTGCCCAACACTCTGAAGAAGCCGCGTGTGGCCTCCA
GGGGACCCGGCATGGGCCGCAGGGTGTTATGGTCTGCAAGAAGGACTACA
ACGTCAACCACCCCAAGGTCGAGCCCACCGTGAAGAACCTCCACGTCTGC
AAGCTCATGCAGTCGTTCAAGTCCAAGGGCTACGTGAACGAGACCTTCTC
GTGGCAGTACTACTACTACTACCTCACCGACGAGGGCATCCAGTTCCTCC
GCGACTTCCTTCACCTCGGTGAGGAGGTCGTGCCCAACACTCTGAAGAAG
CCGCGTGTGGCCTCCAGGGGACCCGGCATGGGCCGC
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