mRNA_M-pyrifera_M_contig89414.20726.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89414.20726.1
Unique NamemRNA_M-pyrifera_M_contig89414.20726.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig89414.20726.1 vs. uniprot
Match: K8ENG4_9CHLO (Uncharacterized protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8ENG4_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 4.380e-8
Identity = 35/96 (36.46%), Postives = 50/96 (52.08%), Query Frame = 1
Query:    7 IVSLCAYDGEASPVLSQASIANKAAWCRLH-GYDCRLETQ----------GAQRRQWGLKRPAAWYKVPLVAKHLARGDWVVWMDCDTLVSNPTEA 261
            IVS C      S  + QAS+ANK  +C  H   DC + T+              RQ  L   + WYK PL+ ++L   +WV+W+DCDTL+ N T++
Sbjct:   91 IVSSCVKGVGISDEMVQASVANKLMYCEDHKNVDCIINTEFRDLVGDFRFNVTYRQDQLS--SKWYKFPLILENLDSYEWVIWLDCDTLILNRTKS 184          
BLAST of mRNA_M-pyrifera_M_contig89414.20726.1 vs. uniprot
Match: A0A8J1YY48_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1YY48_9DINO)

HSP 1 Score: 56.6 bits (135), Expect = 2.280e-7
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    1 IVIVSLCAYDGEASPVLSQASIANKAAWCRLHGYDCRLETQGA--QRRQWGL------KRPAAWYKVPLVAKHLARG-DWVVWMDCDT 237
            I+IVS+C Y+ + +P+ S  S+ NK  +   HGY+ ++  +G   Q +  GL       RP AW K+  V   L  G DWV+WMDCD+
Sbjct:  411 ILIVSVCEYNNDVTPLYS-LSLWNKKRYAEKHGYEVQVHAKGPLLQDQFAGLYEEPPAHRPPAWSKIDAVLLGLREGHDWVMWMDCDS 497          
BLAST of mRNA_M-pyrifera_M_contig89414.20726.1 vs. uniprot
Match: A0A7S1AUH0_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AUH0_NOCSC)

HSP 1 Score: 52.4 bits (124), Expect = 6.760e-6
Identity = 30/85 (35.29%), Postives = 44/85 (51.76%), Query Frame = 1
Query:    1 IVIVSLCAYDGEASPVLSQASIANKAAWCRLHGYDCRLETQGAQRRQWGLKRPAAWYKVPLVAKHLARGD--WVVWMDCDTLVSN 249
            I +VS+CAY  +   VL   +  N+  +  LHGY  R+  +       GL    A  K+  V  +L  GD  WVVW+DCD+++ N
Sbjct:   15 IAVVSICAYPPDGQLVLPNVTPRNRDVYSSLHGYSSRVHLEPPVLGAQGLGVQHA--KLATVLAYLQSGDFDWVVWLDCDSIIMN 97          
BLAST of mRNA_M-pyrifera_M_contig89414.20726.1 vs. uniprot
Match: A0A7J6N0H9_PERCH (Protein O-glucosyltransferase 2 n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6N0H9_PERCH)

HSP 1 Score: 51.2 bits (121), Expect = 1.880e-5
Identity = 28/85 (32.94%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    7 IVSLCAYDGEASPVLSQASIANKAAWCRLHGYDCRLETQGAQRRQWGLKRPAAWYKVPLVAKHLARG--DWVVWMDCDTLVSNPT 255
            IVS+CAY  ++  +L + +  N+ A+   HGY   +  +    R  G +      K+ L+A+++  G  DW+VWMDCD+++ N T
Sbjct:  655 IVSICAYPEDSPMLLRRVTPRNREAYTARHGYSNLMHLE----RPMGAEVHVQHSKLWLMAEYVRSGQYDWLVWMDCDSIIMNMT 735          
BLAST of mRNA_M-pyrifera_M_contig89414.20726.1 vs. uniprot
Match: A0A7J6QGU3_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6QGU3_PEROL)

HSP 1 Score: 50.4 bits (119), Expect = 3.320e-5
Identity = 27/85 (31.76%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    7 IVSLCAYDGEASPVLSQASIANKAAWCRLHGYDCRLETQGAQRRQWGLKRPAAWYKVPLVAKHLARG--DWVVWMDCDTLVSNPT 255
            IVS+CAY  ++  +L + + AN+ A+   HGY   +  +     +  ++    W    L+A+++  G  DW+VWMDCD+++ N T
Sbjct:  121 IVSICAYPQDSPILLRRVTPANREAYTSQHGYRNLMHLEKPLGPEVHVQHSKLW----LMAQYVKSGEFDWLVWMDCDSIIMNMT 201          
BLAST of mRNA_M-pyrifera_M_contig89414.20726.1 vs. uniprot
Match: A0A8J2ACW0_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2ACW0_9DINO)

HSP 1 Score: 50.4 bits (119), Expect = 3.420e-5
Identity = 30/85 (35.29%), Postives = 42/85 (49.41%), Query Frame = 1
Query:    1 IVIVSLCAYDGEASPVLSQASIANKAAWCRLHGYDCRLETQGAQRRQWGLKRPAAWYKVPLVAKHLARG--DWVVWMDCDTLVSN 249
            I IVS+CAY   +   L   +  N+  + R HGY  RL T+       G        K+  V  ++  G  DWVVW+DCD+L+ N
Sbjct:  409 IAIVSICAYPPTSDIALKDVTPVNREVYARKHGYALRLHTEPPLL---GGNVQIQHAKLATVNHYIRSGEFDWVVWLDCDSLIMN 490          
BLAST of mRNA_M-pyrifera_M_contig89414.20726.1 vs. uniprot
Match: A0A7J6MVF7_PEROL (Protein O-glucosyltransferase 3 n=6 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6MVF7_PEROL)

HSP 1 Score: 50.4 bits (119), Expect = 3.440e-5
Identity = 27/85 (31.76%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    7 IVSLCAYDGEASPVLSQASIANKAAWCRLHGYDCRLETQGAQRRQWGLKRPAAWYKVPLVAKHLARG--DWVVWMDCDTLVSNPT 255
            IVS+CAY  ++  +L + + AN+ A+   HGY   +  +     +  ++    W    L+A+++  G  DW+VWMDCD+++ N T
Sbjct:  660 IVSICAYPEDSPILLRRVTPANREAYTSRHGYRDLMHLEKPLGPEVHVQHSKLW----LMAQYVKAGEFDWLVWMDCDSIIMNMT 740          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89414.20726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
K8ENG4_9CHLO4.380e-836.46Uncharacterized protein n=1 Tax=Bathycoccus prasin... [more]
A0A8J1YY48_9DINO2.280e-738.64Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7S1AUH0_NOCSC6.760e-635.29Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A7J6N0H9_PERCH1.880e-532.94Protein O-glucosyltransferase 2 n=1 Tax=Perkinsus ... [more]
A0A7J6QGU3_PEROL3.320e-531.76Uncharacterized protein n=1 Tax=Perkinsus olseni T... [more]
A0A8J2ACW0_9DINO3.420e-535.29Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7J6MVF7_PEROL3.440e-531.76Protein O-glucosyltransferase 3 n=6 Tax=Perkinsus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89414contigM-pyrifera_M_contig89414:121..381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816804.3671322-CDS-M-pyrifera_M_contig89414:120..3811622816804.3671322-CDS-M-pyrifera_M_contig89414:120..381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89414 121..381 -
1692278188.447309-CDS-M-pyrifera_M_contig89414:120..3811692278188.447309-CDS-M-pyrifera_M_contig89414:120..381Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89414 121..381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89414.20726.1prot_M-pyrifera_M_contig89414.20726.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89414 121..381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89414.20726.1

>prot_M-pyrifera_M_contig89414.20726.1 ID=prot_M-pyrifera_M_contig89414.20726.1|Name=mRNA_M-pyrifera_M_contig89414.20726.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
IVIVSLCAYDGEASPVLSQASIANKAAWCRLHGYDCRLETQGAQRRQWGL
KRPAAWYKVPLVAKHLARGDWVVWMDCDTLVSNPTEA
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mRNA from alignment at M-pyrifera_M_contig89414:121..381-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89414.20726.1 ID=mRNA_M-pyrifera_M_contig89414.20726.1|Name=mRNA_M-pyrifera_M_contig89414.20726.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig89414:121..381- (Macrocystis pyrifera P11B4 male)
ATTGTGATTGTAAGTTTGTGTGCTTATGATGGCGAGGCCAGTCCTGTTCT CTCTCAAGCAAGCATTGCAAACAAAGCTGCATGGTGTCGACTACATGGTT ATGATTGTCGATTAGAAACACAAGGGGCGCAACGACGGCAGTGGGGGCTA AAGAGACCTGCAGCTTGGTACAAGGTGCCGTTGGTTGCGAAGCACCTTGC AAGAGGAGATTGGGTTGTATGGATGGATTGTGATACGCTTGTGTCGAATC CAACGGAAGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89414:121..381-

>mRNA_M-pyrifera_M_contig89414.20726.1 ID=mRNA_M-pyrifera_M_contig89414.20726.1|Name=mRNA_M-pyrifera_M_contig89414.20726.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig89414:121..381- (Macrocystis pyrifera P11B4 male)
ATTGTGATTGTAAGTTTGTGTGCTTATGATGGCGAGGCCAGTCCTGTTCT
CTCTCAAGCAAGCATTGCAAACAAAGCTGCATGGTGTCGACTACATGGTT
ATGATTGTCGATTAGAAACACAAGGGGCGCAACGACGGCAGTGGGGGCTA
AAGAGACCTGCAGCTTGGTACAAGGTGCCGTTGGTTGCGAAGCACCTTGC
AAGAGGAGATTGGGTTGTATGGATGGATTGTGATACGCTTGTGTCGAATC
CAACGGAAGCTATTGTGATTGTAAGTTTGTGTGCTTATGATGGCGAGGCC
AGTCCTGTTCTCTCTCAAGCAAGCATTGCAAACAAAGCTGCATGGTGTCG
ACTACATGGTTATGATTGTCGATTAGAAACACAAGGGGCGCAACGACGGC
AGTGGGGGCTAAAGAGACCTGCAGCTTGGTACAAGGTGCCGTTGGTTGCG
AAGCACCTTGCAAGAGGAGATTGGGTTGTATGGATGGATTGTGATACGCT
TGTGTCGAATCCAACGGAAGCT
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